Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS14080

Experiment: Pectin from citrus peel; autoclaved 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS14075 and HMPREF1078_RS14080 are separated by 127 nucleotidesHMPREF1078_RS14080 and HMPREF1078_RS14085 are separated by 10 nucleotidesHMPREF1078_RS14085 and HMPREF1078_RS14090 are separated by 4 nucleotides HMPREF1078_RS14075: HMPREF1078_RS14075 - glycosyltransferase, at 277,879 to 279,537 _RS14075 HMPREF1078_RS14080: HMPREF1078_RS14080 - hypothetical protein, at 279,665 to 279,949 _RS14080 HMPREF1078_RS14085: HMPREF1078_RS14085 - lysophospholipid acyltransferase family protein, at 279,960 to 280,505 _RS14085 HMPREF1078_RS14090: HMPREF1078_RS14090 - amidohydrolase, at 280,510 to 281,292 _RS14090 Position (kb) 279 280Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 278.700 kb on + strand, within HMPREF1078_RS14075at 278.715 kb on - strand, within HMPREF1078_RS14075at 278.826 kb on + strand, within HMPREF1078_RS14075at 278.859 kb on - strand, within HMPREF1078_RS14075at 278.881 kb on - strand, within HMPREF1078_RS14075at 278.913 kb on - strand, within HMPREF1078_RS14075at 278.922 kb on + strand, within HMPREF1078_RS14075at 278.922 kb on + strand, within HMPREF1078_RS14075at 278.922 kb on + strand, within HMPREF1078_RS14075at 278.923 kb on - strand, within HMPREF1078_RS14075at 278.923 kb on - strand, within HMPREF1078_RS14075at 278.923 kb on - strand, within HMPREF1078_RS14075at 278.923 kb on - strand, within HMPREF1078_RS14075at 278.924 kb on + strand, within HMPREF1078_RS14075at 278.924 kb on + strand, within HMPREF1078_RS14075at 278.924 kb on + strand, within HMPREF1078_RS14075at 278.924 kb on + strand, within HMPREF1078_RS14075at 278.924 kb on + strand, within HMPREF1078_RS14075at 278.924 kb on + strand, within HMPREF1078_RS14075at 278.924 kb on + strand, within HMPREF1078_RS14075at 278.925 kb on - strand, within HMPREF1078_RS14075at 278.925 kb on - strand, within HMPREF1078_RS14075at 278.925 kb on - strand, within HMPREF1078_RS14075at 278.925 kb on - strand, within HMPREF1078_RS14075at 278.925 kb on - strand, within HMPREF1078_RS14075at 278.925 kb on - strand, within HMPREF1078_RS14075at 278.925 kb on - strand, within HMPREF1078_RS14075at 278.930 kb on + strand, within HMPREF1078_RS14075at 278.931 kb on - strand, within HMPREF1078_RS14075at 279.024 kb on - strand, within HMPREF1078_RS14075at 279.117 kb on + strand, within HMPREF1078_RS14075at 279.117 kb on + strand, within HMPREF1078_RS14075at 279.117 kb on + strand, within HMPREF1078_RS14075at 279.118 kb on - strand, within HMPREF1078_RS14075at 279.118 kb on - strand, within HMPREF1078_RS14075at 279.118 kb on - strand, within HMPREF1078_RS14075at 279.118 kb on - strand, within HMPREF1078_RS14075at 279.118 kb on - strand, within HMPREF1078_RS14075at 279.122 kb on - strand, within HMPREF1078_RS14075at 279.138 kb on + strand, within HMPREF1078_RS14075at 279.138 kb on + strand, within HMPREF1078_RS14075at 279.161 kb on + strand, within HMPREF1078_RS14075at 279.162 kb on - strand, within HMPREF1078_RS14075at 279.247 kb on + strand, within HMPREF1078_RS14075at 279.318 kb on + strand, within HMPREF1078_RS14075at 279.400 kb on - strandat 279.411 kb on + strandat 279.418 kb on - strandat 279.435 kb on + strandat 279.461 kb on + strandat 279.462 kb on - strandat 279.466 kb on - strandat 279.477 kb on + strandat 279.480 kb on + strandat 279.484 kb on + strandat 279.484 kb on + strandat 279.485 kb on - strandat 279.485 kb on - strandat 279.510 kb on - strandat 279.528 kb on + strandat 279.528 kb on + strandat 279.551 kb on + strandat 279.630 kb on + strandat 279.646 kb on + strandat 279.664 kb on + strandat 279.665 kb on - strandat 279.739 kb on + strand, within HMPREF1078_RS14080at 279.747 kb on - strand, within HMPREF1078_RS14080at 279.795 kb on + strand, within HMPREF1078_RS14080at 279.796 kb on - strand, within HMPREF1078_RS14080at 279.802 kb on + strand, within HMPREF1078_RS14080at 279.872 kb on + strand, within HMPREF1078_RS14080at 279.876 kb on - strand, within HMPREF1078_RS14080at 279.910 kb on - strand, within HMPREF1078_RS14080at 279.919 kb on - strand, within HMPREF1078_RS14080at 279.955 kb on - strandat 279.973 kb on + strandat 279.977 kb on + strandat 279.977 kb on + strandat 279.978 kb on - strandat 280.045 kb on + strand, within HMPREF1078_RS14085at 280.046 kb on - strand, within HMPREF1078_RS14085at 280.046 kb on - strand, within HMPREF1078_RS14085at 280.046 kb on - strand, within HMPREF1078_RS14085at 280.098 kb on + strand, within HMPREF1078_RS14085at 280.098 kb on + strand, within HMPREF1078_RS14085at 280.098 kb on + strand, within HMPREF1078_RS14085at 280.365 kb on + strand, within HMPREF1078_RS14085at 280.374 kb on + strand, within HMPREF1078_RS14085at 280.405 kb on + strand, within HMPREF1078_RS14085at 280.415 kb on + strand, within HMPREF1078_RS14085at 280.437 kb on - strand, within HMPREF1078_RS14085at 280.507 kb on - strandat 280.533 kb on + strandat 280.533 kb on + strandat 280.548 kb on + strandat 280.625 kb on + strand, within HMPREF1078_RS14090at 280.625 kb on + strand, within HMPREF1078_RS14090at 280.626 kb on - strand, within HMPREF1078_RS14090at 280.626 kb on - strand, within HMPREF1078_RS14090at 280.647 kb on + strand, within HMPREF1078_RS14090at 280.663 kb on - strand, within HMPREF1078_RS14090at 280.702 kb on - strand, within HMPREF1078_RS14090at 280.702 kb on - strand, within HMPREF1078_RS14090at 280.704 kb on + strand, within HMPREF1078_RS14090at 280.704 kb on + strand, within HMPREF1078_RS14090at 280.704 kb on + strand, within HMPREF1078_RS14090at 280.704 kb on + strand, within HMPREF1078_RS14090at 280.704 kb on + strand, within HMPREF1078_RS14090at 280.705 kb on - strand, within HMPREF1078_RS14090at 280.705 kb on - strand, within HMPREF1078_RS14090at 280.711 kb on - strand, within HMPREF1078_RS14090at 280.713 kb on + strand, within HMPREF1078_RS14090at 280.713 kb on + strand, within HMPREF1078_RS14090at 280.713 kb on + strand, within HMPREF1078_RS14090at 280.714 kb on - strand, within HMPREF1078_RS14090at 280.714 kb on - strand, within HMPREF1078_RS14090at 280.715 kb on + strand, within HMPREF1078_RS14090at 280.716 kb on - strand, within HMPREF1078_RS14090at 280.735 kb on + strand, within HMPREF1078_RS14090at 280.735 kb on + strand, within HMPREF1078_RS14090at 280.737 kb on + strand, within HMPREF1078_RS14090at 280.737 kb on + strand, within HMPREF1078_RS14090at 280.738 kb on - strand, within HMPREF1078_RS14090at 280.826 kb on - strand, within HMPREF1078_RS14090at 280.826 kb on - strand, within HMPREF1078_RS14090at 280.826 kb on - strand, within HMPREF1078_RS14090at 280.831 kb on + strand, within HMPREF1078_RS14090at 280.904 kb on + strand, within HMPREF1078_RS14090at 280.909 kb on + strand, within HMPREF1078_RS14090at 280.910 kb on - strand, within HMPREF1078_RS14090at 280.910 kb on - strand, within HMPREF1078_RS14090at 280.911 kb on + strand, within HMPREF1078_RS14090at 280.911 kb on + strand, within HMPREF1078_RS14090at 280.911 kb on + strand, within HMPREF1078_RS14090at 280.912 kb on - strand, within HMPREF1078_RS14090at 280.912 kb on - strand, within HMPREF1078_RS14090at 280.924 kb on - strand, within HMPREF1078_RS14090at 280.943 kb on - strand, within HMPREF1078_RS14090

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from citrus peel; autoclaved 2.5 mg/mL (C)
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278,700 + HMPREF1078_RS14075 0.49 +1.2
278,715 - HMPREF1078_RS14075 0.50 -1.7
278,826 + HMPREF1078_RS14075 0.57 +0.1
278,859 - HMPREF1078_RS14075 0.59 +0.7
278,881 - HMPREF1078_RS14075 0.60 -0.5
278,913 - HMPREF1078_RS14075 0.62 +0.3
278,922 + HMPREF1078_RS14075 0.63 -0.2
278,922 + HMPREF1078_RS14075 0.63 +1.7
278,922 + HMPREF1078_RS14075 0.63 +0.8
278,923 - HMPREF1078_RS14075 0.63 -0.0
278,923 - HMPREF1078_RS14075 0.63 -0.5
278,923 - HMPREF1078_RS14075 0.63 +0.8
278,923 - HMPREF1078_RS14075 0.63 +0.4
278,924 + HMPREF1078_RS14075 0.63 +0.8
278,924 + HMPREF1078_RS14075 0.63 +0.7
278,924 + HMPREF1078_RS14075 0.63 -0.4
278,924 + HMPREF1078_RS14075 0.63 -0.4
278,924 + HMPREF1078_RS14075 0.63 -1.7
278,924 + HMPREF1078_RS14075 0.63 +0.9
278,924 + HMPREF1078_RS14075 0.63 -2.0
278,925 - HMPREF1078_RS14075 0.63 -1.1
278,925 - HMPREF1078_RS14075 0.63 +0.6
278,925 - HMPREF1078_RS14075 0.63 -0.8
278,925 - HMPREF1078_RS14075 0.63 -0.9
278,925 - HMPREF1078_RS14075 0.63 +0.5
278,925 - HMPREF1078_RS14075 0.63 -0.1
278,925 - HMPREF1078_RS14075 0.63 -0.1
278,930 + HMPREF1078_RS14075 0.63 -0.1
278,931 - HMPREF1078_RS14075 0.63 -0.9
279,024 - HMPREF1078_RS14075 0.69 +0.8
279,117 + HMPREF1078_RS14075 0.75 +0.8
279,117 + HMPREF1078_RS14075 0.75 +0.9
279,117 + HMPREF1078_RS14075 0.75 -1.3
279,118 - HMPREF1078_RS14075 0.75 -0.9
279,118 - HMPREF1078_RS14075 0.75 +0.4
279,118 - HMPREF1078_RS14075 0.75 +0.1
279,118 - HMPREF1078_RS14075 0.75 +1.5
279,118 - HMPREF1078_RS14075 0.75 -1.7
279,122 - HMPREF1078_RS14075 0.75 -0.7
279,138 + HMPREF1078_RS14075 0.76 -0.2
279,138 + HMPREF1078_RS14075 0.76 +1.6
279,161 + HMPREF1078_RS14075 0.77 +0.9
279,162 - HMPREF1078_RS14075 0.77 +0.9
279,247 + HMPREF1078_RS14075 0.82 +0.1
279,318 + HMPREF1078_RS14075 0.87 -1.9
279,400 - -0.3
279,411 + +0.3
279,418 - -0.4
279,435 + -0.3
279,461 + -1.2
279,462 - +0.5
279,466 - -0.6
279,477 + +0.0
279,480 + -0.7
279,484 + +0.9
279,484 + -1.3
279,485 - -0.3
279,485 - -0.0
279,510 - -0.6
279,528 + +0.8
279,528 + +0.1
279,551 + +1.0
279,630 + +0.8
279,646 + +1.1
279,664 + -2.7
279,665 - -1.3
279,739 + HMPREF1078_RS14080 0.26 -0.0
279,747 - HMPREF1078_RS14080 0.29 -0.4
279,795 + HMPREF1078_RS14080 0.46 -0.5
279,796 - HMPREF1078_RS14080 0.46 -2.1
279,802 + HMPREF1078_RS14080 0.48 -0.8
279,872 + HMPREF1078_RS14080 0.73 +0.5
279,876 - HMPREF1078_RS14080 0.74 -2.4
279,910 - HMPREF1078_RS14080 0.86 -1.9
279,919 - HMPREF1078_RS14080 0.89 -1.1
279,955 - -1.4
279,973 + +0.1
279,977 + -1.2
279,977 + -2.1
279,978 - +1.3
280,045 + HMPREF1078_RS14085 0.16 +0.3
280,046 - HMPREF1078_RS14085 0.16 -1.4
280,046 - HMPREF1078_RS14085 0.16 -0.4
280,046 - HMPREF1078_RS14085 0.16 +1.1
280,098 + HMPREF1078_RS14085 0.25 -0.9
280,098 + HMPREF1078_RS14085 0.25 +1.9
280,098 + HMPREF1078_RS14085 0.25 +0.1
280,365 + HMPREF1078_RS14085 0.74 +1.6
280,374 + HMPREF1078_RS14085 0.76 -0.2
280,405 + HMPREF1078_RS14085 0.82 -0.3
280,415 + HMPREF1078_RS14085 0.83 +0.2
280,437 - HMPREF1078_RS14085 0.87 +0.0
280,507 - -0.9
280,533 + +1.2
280,533 + -1.0
280,548 + -0.7
280,625 + HMPREF1078_RS14090 0.15 -0.0
280,625 + HMPREF1078_RS14090 0.15 -0.4
280,626 - HMPREF1078_RS14090 0.15 -0.4
280,626 - HMPREF1078_RS14090 0.15 -2.0
280,647 + HMPREF1078_RS14090 0.17 +0.6
280,663 - HMPREF1078_RS14090 0.20 -1.2
280,702 - HMPREF1078_RS14090 0.25 +0.1
280,702 - HMPREF1078_RS14090 0.25 -2.0
280,704 + HMPREF1078_RS14090 0.25 -2.3
280,704 + HMPREF1078_RS14090 0.25 +1.2
280,704 + HMPREF1078_RS14090 0.25 +1.0
280,704 + HMPREF1078_RS14090 0.25 -1.5
280,704 + HMPREF1078_RS14090 0.25 -1.0
280,705 - HMPREF1078_RS14090 0.25 -1.2
280,705 - HMPREF1078_RS14090 0.25 +0.5
280,711 - HMPREF1078_RS14090 0.26 +0.3
280,713 + HMPREF1078_RS14090 0.26 +0.4
280,713 + HMPREF1078_RS14090 0.26 -0.4
280,713 + HMPREF1078_RS14090 0.26 +2.3
280,714 - HMPREF1078_RS14090 0.26 -1.2
280,714 - HMPREF1078_RS14090 0.26 -0.6
280,715 + HMPREF1078_RS14090 0.26 -0.9
280,716 - HMPREF1078_RS14090 0.26 +0.2
280,735 + HMPREF1078_RS14090 0.29 -0.3
280,735 + HMPREF1078_RS14090 0.29 -0.3
280,737 + HMPREF1078_RS14090 0.29 -0.3
280,737 + HMPREF1078_RS14090 0.29 -2.1
280,738 - HMPREF1078_RS14090 0.29 -0.1
280,826 - HMPREF1078_RS14090 0.40 -0.1
280,826 - HMPREF1078_RS14090 0.40 +0.7
280,826 - HMPREF1078_RS14090 0.40 -1.6
280,831 + HMPREF1078_RS14090 0.41 -3.0
280,904 + HMPREF1078_RS14090 0.50 -0.9
280,909 + HMPREF1078_RS14090 0.51 -0.2
280,910 - HMPREF1078_RS14090 0.51 +0.1
280,910 - HMPREF1078_RS14090 0.51 -2.5
280,911 + HMPREF1078_RS14090 0.51 -1.7
280,911 + HMPREF1078_RS14090 0.51 -0.1
280,911 + HMPREF1078_RS14090 0.51 -0.7
280,912 - HMPREF1078_RS14090 0.51 -0.6
280,912 - HMPREF1078_RS14090 0.51 -0.6
280,924 - HMPREF1078_RS14090 0.53 -1.0
280,943 - HMPREF1078_RS14090 0.55 -0.2

Or see this region's nucleotide sequence