Strain Fitness in Variovorax sp. SCN45 around GFF3645

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
151,946	+				-0.0
151,946	+				+0.1
151,946	+				+1.1
151,946	+				+0.6
151,946	+				+0.4
151,946	+				+0.2
151,946	+				-0.6
151,947	-				-0.1
151,947	-				+0.3
151,947	-				-0.9
151,947	-				-0.6
151,947	-				+1.0
151,956	+		GFF3645	0.11	+0.3
152,087	+		GFF3645	0.37	+0.7
152,087	+		GFF3645	0.37	+0.1
152,087	+		GFF3645	0.37	+0.7
152,087	+		GFF3645	0.37	+0.3
152,087	+		GFF3645	0.37	-0.8
152,087	+		GFF3645	0.37	-0.7
152,087	+		GFF3645	0.37	+0.0
152,087	+		GFF3645	0.37	+0.6
152,088	-		GFF3645	0.37	-1.3
152,088	-		GFF3645	0.37	+0.2
152,088	-		GFF3645	0.37	-0.6
152,088	-		GFF3645	0.37	+0.3
152,300	+		GFF3645	0.79	+0.5
152,300	+		GFF3645	0.79	-0.7
152,301	-		GFF3645	0.79	-0.8
152,432	+				+0.8
152,432	+				-0.1
152,432	+				+0.5
152,433	-				+0.4
152,433	-				-0.3
152,433	-				+0.7
152,433	-				-0.4
152,433	-				-0.3
152,433	-				-0.2
152,433	-				-0.5
152,433	-				-0.9
152,433	-				-0.7
152,459	+				+1.5
152,459	+				-0.0
152,459	+				-0.4
152,459	+				-1.6
152,459	+				-0.9
152,459	+				+0.7
152,459	+				+2.5
152,459	+				-0.7
152,459	+				-0.9
152,459	+				+0.3
152,459	+				-0.0
152,459	+				-1.3
152,459	+				-0.1
152,459	+				-0.7
152,460	-				-0.6
152,460	-				-0.8
152,460	-				-0.7
152,460	-				+0.7
152,460	-				-0.4
152,460	-				+0.6
152,460	-				+0.2
152,460	-				-0.7
152,460	-				+0.3
152,460	-				-0.7
152,460	-				+0.5
152,460	-				-0.7
152,460	-				-0.3
152,460	-				+0.1
152,460	-				-1.5
152,460	-				+0.1
152,460	-				-0.6
152,462	+				+0.3
152,462	+				-0.4
152,462	+				+0.6
152,462	+				-0.6
152,462	+				-1.2
152,462	+				-0.9
152,462	+				-0.0
152,462	+				-0.9
152,462	+				+1.1
152,462	+				-0.3
152,462	+				+1.5
152,462	+				-0.9
152,462	+				-0.3
152,463	-				-0.9
152,463	-				-1.4
152,463	-				-0.5
152,463	-				-1.3
152,463	-				-0.7
152,463	-				-0.2
152,463	-				-2.0
152,495	+		GFF3646	0.14	-1.4
152,495	+		GFF3646	0.14	-1.7
152,496	-		GFF3646	0.14	+0.5
152,496	-		GFF3646	0.14	-0.3
152,496	-		GFF3646	0.14	-0.1
152,549	+		GFF3646	0.23	-1.1
152,549	+		GFF3646	0.23	+0.0
152,630	+		GFF3646	0.37	-0.2
152,630	+		GFF3646	0.37	+0.8
152,630	+		GFF3646	0.37	-0.9
152,630	+		GFF3646	0.37	-0.9
152,630	+		GFF3646	0.37	-0.4
152,630	+		GFF3646	0.37	+2.1
152,630	+		GFF3646	0.37	-0.6
152,630	+		GFF3646	0.37	+0.1
152,630	+		GFF3646	0.37	-1.1
152,630	+		GFF3646	0.37	-1.6
152,630	+		GFF3646	0.37	-0.1
152,630	+		GFF3646	0.37	+0.9
152,631	-		GFF3646	0.37	-1.3
152,631	-		GFF3646	0.37	-0.6
152,631	-		GFF3646	0.37	-1.4
152,631	-		GFF3646	0.37	+0.8
152,660	+		GFF3646	0.42	-0.3
152,660	+		GFF3646	0.42	-0.9
152,660	+		GFF3646	0.42	-0.9
152,660	+		GFF3646	0.42	-0.6
152,660	+		GFF3646	0.42	-0.3
152,661	-		GFF3646	0.42	-0.5
152,661	-		GFF3646	0.42	-0.4
152,661	-		GFF3646	0.42	+0.4
152,661	-		GFF3646	0.42	-0.7
152,816	+		GFF3646	0.69	-0.3
152,817	-		GFF3646	0.69	-0.0
152,817	-		GFF3646	0.69	+0.0
152,817	-		GFF3646	0.69	-0.1
152,817	-		GFF3646	0.69	+0.6
152,889	-		GFF3646	0.81	+0.3
152,889	-		GFF3646	0.81	+1.0
152,889	-		GFF3646	0.81	-0.2
152,889	-		GFF3646	0.81	+0.0
153,000	+				+0.6
153,000	+				-0.1
153,000	+				-1.7
153,000	+				+0.5
153,000	+				-2.2
153,000	+				+0.3
153,000	+				+0.3
153,001	-				+0.5
153,001	-				+0.5
153,001	-				+0.1
153,001	-				-0.1
153,001	-				-1.5
153,001	-				-0.6
153,001	-				+0.3
153,001	-				-1.5
153,001	-				+0.5
153,001	-				-0.6
153,001	-				-0.3
153,001	-				+0.1
153,001	-				+0.4
153,022	+				-0.3
153,022	+				-1.9
153,023	-				-0.1
153,023	-				+0.5
153,120	+		GFF3647	0.17	-1.0
153,120	+		GFF3647	0.17	+0.7
153,120	+		GFF3647	0.17	+0.1
153,120	+		GFF3647	0.17	-1.4
153,120	+		GFF3647	0.17	-1.9
153,120	+		GFF3647	0.17	-0.3
153,120	+		GFF3647	0.17	+0.1
153,121	-		GFF3647	0.17	-0.4
153,121	-		GFF3647	0.17	-0.5
153,121	-		GFF3647	0.17	-0.4
153,121	-		GFF3647	0.17	-1.7
153,121	-		GFF3647	0.17	-0.9
153,121	-		GFF3647	0.17	+0.5
153,121	-		GFF3647	0.17	+1.3
153,178	+		GFF3647	0.25	+0.1
153,178	+		GFF3647	0.25	+0.9
153,178	+		GFF3647	0.25	-0.3
153,179	-		GFF3647	0.25	-0.9
153,179	-		GFF3647	0.25	+0.5
153,179	-		GFF3647	0.25	-0.5
153,179	-		GFF3647	0.25	+0.8
153,179	-		GFF3647	0.25	+0.5
153,207	+		GFF3647	0.29	+0.7
153,207	+		GFF3647	0.29	-0.3
153,208	-		GFF3647	0.30	-0.4
153,208	-		GFF3647	0.30	-0.7
153,208	-		GFF3647	0.30	-0.0
153,208	-		GFF3647	0.30	-1.1
153,208	-		GFF3647	0.30	+0.1
153,208	-		GFF3647	0.30	+0.7