Strain Fitness in Variovorax sp. SCN45 around GFF6338

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
2,005	+				+0.6
2,005	+				+0.1
2,006	-				-0.0
2,015	+				+0.2
2,015	+				-0.0
2,015	+				-0.0
2,046	+				+0.3
2,046	+				-1.5
2,060	+				-0.3
2,061	-				-1.2
2,061	-				-0.3
2,061	-				-0.5
2,061	-				+1.2
2,115	+				-0.8
2,116	-				+0.4
2,176	+		GFF6337	0.15	-1.3
2,176	+		GFF6337	0.15	+0.5
2,177	-		GFF6337	0.15	+0.8
2,177	-		GFF6337	0.15	+0.6
2,177	-		GFF6337	0.15	+1.5
2,177	-		GFF6337	0.15	-1.2
2,341	+		GFF6337	0.35	+0.8
2,341	+		GFF6337	0.35	-0.2
2,342	-		GFF6337	0.35	-0.6
2,342	-		GFF6337	0.35	+0.4
2,374	+		GFF6337	0.39	+1.0
2,375	-		GFF6337	0.39	+0.2
2,375	-		GFF6337	0.39	-1.3
2,389	+		GFF6337	0.41	-0.3
2,389	+		GFF6337	0.41	-1.6
2,389	+		GFF6337	0.41	+0.8
2,389	+		GFF6337	0.41	+0.6
2,389	+		GFF6337	0.41	+0.2
2,390	-		GFF6337	0.41	+0.8
2,390	-		GFF6337	0.41	-0.4
2,390	-		GFF6337	0.41	-0.3
2,390	-		GFF6337	0.41	+0.0
2,390	-		GFF6337	0.41	-0.3
2,390	-		GFF6337	0.41	+0.3
2,409	-		GFF6337	0.43	-0.6
2,409	-		GFF6337	0.43	+2.4
2,467	-		GFF6337	0.50	+0.8
2,688	+		GFF6337	0.76	-0.7
2,689	-		GFF6337	0.76	+0.1
2,689	-		GFF6337	0.76	-0.4
2,814	+				+0.7
2,814	+				+0.6
2,983	+		GFF6338	0.77	+0.6
2,983	+		GFF6338	0.77	+2.3
2,983	+		GFF6338	0.77	-0.4
2,983	+		GFF6338	0.77	-0.4
2,984	-		GFF6338	0.78	+0.1
2,984	-		GFF6338	0.78	-0.3
2,984	-		GFF6338	0.78	-0.1
3,006	+				+0.9
3,162	-				-1.3
3,162	-				-1.3
3,162	-				-0.2
3,359	+				+0.2
3,360	-				+0.4
3,385	+				+0.1
3,396	+				-0.6
3,397	-				-1.1
3,399	+				+1.6
3,399	+				-0.6
3,568	+				-2.1
3,568	+				+0.4
3,568	+				+0.2
3,569	-				+0.1
3,569	-				-0.0
3,569	-				-1.0
3,569	-				-0.2
3,569	-				+0.1
3,569	-				-0.0
3,635	-				-0.9
3,635	-				-0.5
3,635	-				-1.0
3,635	-				+0.1
3,635	-				-0.5
3,635	-				+0.1
3,639	+				-0.2
3,639	+				+0.8
3,640	-				-0.3
3,686	-				-0.3
3,737	+				-0.1
3,737	+				+1.8
3,738	-				-0.3
3,774	-				+0.5
3,780	-				-0.6
3,797	+				+0.1
3,797	+				+0.3
3,798	-				-0.2
3,896	-		GFF6340	0.58	-0.4
3,896	-		GFF6340	0.58	+0.1