Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04015

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04014 and MPMX19_04015 are separated by 109 nucleotidesMPMX19_04015 and MPMX19_04016 overlap by 4 nucleotides MPMX19_04014: MPMX19_04014 - hypothetical protein, at 309,675 to 310,625 _04014 MPMX19_04015: MPMX19_04015 - Oligopeptide transport ATP-binding protein OppF, at 310,735 to 311,736 _04015 MPMX19_04016: MPMX19_04016 - Oligopeptide transport ATP-binding protein OppD, at 311,733 to 312,737 _04016 Position (kb) 310 311 312Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 309.786 kb on - strand, within MPMX19_04014at 309.786 kb on - strand, within MPMX19_04014at 309.825 kb on - strand, within MPMX19_04014at 309.825 kb on - strand, within MPMX19_04014at 309.862 kb on + strand, within MPMX19_04014at 309.863 kb on - strand, within MPMX19_04014at 309.863 kb on - strand, within MPMX19_04014at 309.896 kb on + strand, within MPMX19_04014at 309.896 kb on + strand, within MPMX19_04014at 309.896 kb on + strand, within MPMX19_04014at 309.900 kb on + strand, within MPMX19_04014at 309.900 kb on + strand, within MPMX19_04014at 309.901 kb on - strand, within MPMX19_04014at 309.903 kb on - strand, within MPMX19_04014at 309.945 kb on + strand, within MPMX19_04014at 309.945 kb on + strand, within MPMX19_04014at 309.983 kb on + strand, within MPMX19_04014at 309.985 kb on + strand, within MPMX19_04014at 309.985 kb on + strand, within MPMX19_04014at 309.986 kb on - strand, within MPMX19_04014at 309.986 kb on - strand, within MPMX19_04014at 310.077 kb on - strand, within MPMX19_04014at 310.103 kb on - strand, within MPMX19_04014at 310.103 kb on - strand, within MPMX19_04014at 310.166 kb on + strand, within MPMX19_04014at 310.167 kb on - strand, within MPMX19_04014at 310.372 kb on + strand, within MPMX19_04014at 310.407 kb on + strand, within MPMX19_04014at 310.407 kb on + strand, within MPMX19_04014at 310.407 kb on + strand, within MPMX19_04014at 310.407 kb on + strand, within MPMX19_04014at 310.408 kb on - strand, within MPMX19_04014at 310.408 kb on - strand, within MPMX19_04014at 310.408 kb on - strand, within MPMX19_04014at 310.408 kb on - strand, within MPMX19_04014at 310.411 kb on + strand, within MPMX19_04014at 310.411 kb on + strand, within MPMX19_04014at 310.411 kb on + strand, within MPMX19_04014at 310.411 kb on + strand, within MPMX19_04014at 310.411 kb on + strand, within MPMX19_04014at 310.411 kb on + strand, within MPMX19_04014at 310.411 kb on + strand, within MPMX19_04014at 310.411 kb on + strand, within MPMX19_04014at 310.411 kb on + strand, within MPMX19_04014at 310.411 kb on + strand, within MPMX19_04014at 310.411 kb on + strand, within MPMX19_04014at 310.412 kb on - strand, within MPMX19_04014at 310.412 kb on - strand, within MPMX19_04014at 310.412 kb on - strand, within MPMX19_04014at 310.412 kb on - strand, within MPMX19_04014at 310.412 kb on - strand, within MPMX19_04014at 310.412 kb on - strand, within MPMX19_04014at 310.412 kb on - strand, within MPMX19_04014at 310.412 kb on - strand, within MPMX19_04014at 310.412 kb on - strand, within MPMX19_04014at 310.412 kb on - strand, within MPMX19_04014at 310.412 kb on - strand, within MPMX19_04014at 310.416 kb on + strand, within MPMX19_04014at 310.416 kb on + strand, within MPMX19_04014at 310.416 kb on + strand, within MPMX19_04014at 310.416 kb on + strand, within MPMX19_04014at 310.417 kb on - strand, within MPMX19_04014at 310.417 kb on - strand, within MPMX19_04014at 310.445 kb on + strand, within MPMX19_04014at 310.498 kb on + strand, within MPMX19_04014at 310.499 kb on - strand, within MPMX19_04014at 310.561 kb on + strandat 310.574 kb on + strandat 310.639 kb on + strandat 310.714 kb on + strandat 310.717 kb on + strandat 310.718 kb on - strandat 310.718 kb on - strandat 310.786 kb on + strandat 310.787 kb on - strandat 310.967 kb on + strand, within MPMX19_04015at 310.967 kb on + strand, within MPMX19_04015at 310.967 kb on + strand, within MPMX19_04015at 310.967 kb on + strand, within MPMX19_04015at 310.968 kb on - strand, within MPMX19_04015at 310.968 kb on - strand, within MPMX19_04015at 310.968 kb on - strand, within MPMX19_04015at 310.968 kb on - strand, within MPMX19_04015at 310.968 kb on - strand, within MPMX19_04015at 310.968 kb on - strand, within MPMX19_04015at 310.968 kb on - strand, within MPMX19_04015at 310.968 kb on - strand, within MPMX19_04015at 310.989 kb on - strand, within MPMX19_04015at 310.989 kb on - strand, within MPMX19_04015at 310.989 kb on - strand, within MPMX19_04015at 310.989 kb on - strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.031 kb on - strand, within MPMX19_04015at 311.031 kb on - strand, within MPMX19_04015at 311.031 kb on - strand, within MPMX19_04015at 311.031 kb on - strand, within MPMX19_04015at 311.031 kb on - strand, within MPMX19_04015at 311.031 kb on - strand, within MPMX19_04015at 311.031 kb on - strand, within MPMX19_04015at 311.031 kb on - strand, within MPMX19_04015at 311.031 kb on - strand, within MPMX19_04015at 311.031 kb on - strand, within MPMX19_04015at 311.031 kb on - strand, within MPMX19_04015at 311.031 kb on - strand, within MPMX19_04015at 311.031 kb on - strand, within MPMX19_04015at 311.031 kb on - strand, within MPMX19_04015at 311.057 kb on + strand, within MPMX19_04015at 311.057 kb on + strand, within MPMX19_04015at 311.057 kb on + strand, within MPMX19_04015at 311.057 kb on + strand, within MPMX19_04015at 311.058 kb on - strand, within MPMX19_04015at 311.058 kb on - strand, within MPMX19_04015at 311.058 kb on - strand, within MPMX19_04015at 311.058 kb on - strand, within MPMX19_04015at 311.058 kb on - strand, within MPMX19_04015at 311.058 kb on - strand, within MPMX19_04015at 311.411 kb on + strand, within MPMX19_04015at 311.411 kb on + strand, within MPMX19_04015at 311.411 kb on + strand, within MPMX19_04015at 311.411 kb on + strand, within MPMX19_04015at 311.411 kb on + strand, within MPMX19_04015at 311.412 kb on - strand, within MPMX19_04015at 311.412 kb on - strand, within MPMX19_04015at 311.412 kb on - strand, within MPMX19_04015at 311.724 kb on + strandat 311.724 kb on + strandat 311.725 kb on - strandat 311.725 kb on - strandat 311.899 kb on + strand, within MPMX19_04016at 311.899 kb on + strand, within MPMX19_04016at 311.899 kb on + strand, within MPMX19_04016at 311.899 kb on + strand, within MPMX19_04016at 311.899 kb on + strand, within MPMX19_04016at 311.899 kb on + strand, within MPMX19_04016at 311.899 kb on + strand, within MPMX19_04016at 311.900 kb on - strand, within MPMX19_04016at 311.900 kb on - strand, within MPMX19_04016at 311.900 kb on - strand, within MPMX19_04016at 311.900 kb on - strand, within MPMX19_04016at 311.900 kb on - strand, within MPMX19_04016at 311.900 kb on - strand, within MPMX19_04016at 311.965 kb on + strand, within MPMX19_04016at 311.965 kb on + strand, within MPMX19_04016at 311.965 kb on + strand, within MPMX19_04016at 311.965 kb on + strand, within MPMX19_04016at 311.965 kb on + strand, within MPMX19_04016at 311.965 kb on + strand, within MPMX19_04016at 311.965 kb on + strand, within MPMX19_04016at 311.965 kb on + strand, within MPMX19_04016at 311.965 kb on + strand, within MPMX19_04016at 311.965 kb on + strand, within MPMX19_04016at 311.965 kb on + strand, within MPMX19_04016at 311.966 kb on - strand, within MPMX19_04016at 311.966 kb on - strand, within MPMX19_04016at 312.028 kb on + strand, within MPMX19_04016at 312.028 kb on + strand, within MPMX19_04016at 312.028 kb on + strand, within MPMX19_04016at 312.029 kb on - strand, within MPMX19_04016at 312.029 kb on - strand, within MPMX19_04016at 312.029 kb on - strand, within MPMX19_04016at 312.029 kb on - strand, within MPMX19_04016at 312.029 kb on - strand, within MPMX19_04016at 312.029 kb on - strand, within MPMX19_04016at 312.029 kb on - strand, within MPMX19_04016at 312.029 kb on - strand, within MPMX19_04016at 312.029 kb on - strand, within MPMX19_04016at 312.029 kb on - strand, within MPMX19_04016at 312.029 kb on - strand, within MPMX19_04016at 312.029 kb on - strand, within MPMX19_04016at 312.029 kb on - strand, within MPMX19_04016at 312.262 kb on + strand, within MPMX19_04016at 312.358 kb on + strand, within MPMX19_04016at 312.359 kb on - strand, within MPMX19_04016at 312.359 kb on - strand, within MPMX19_04016at 312.394 kb on + strand, within MPMX19_04016at 312.394 kb on + strand, within MPMX19_04016at 312.394 kb on + strand, within MPMX19_04016at 312.394 kb on + strand, within MPMX19_04016at 312.394 kb on + strand, within MPMX19_04016at 312.394 kb on + strand, within MPMX19_04016at 312.394 kb on + strand, within MPMX19_04016at 312.394 kb on + strand, within MPMX19_04016at 312.394 kb on + strand, within MPMX19_04016at 312.395 kb on - strand, within MPMX19_04016at 312.395 kb on - strand, within MPMX19_04016at 312.395 kb on - strand, within MPMX19_04016at 312.395 kb on - strand, within MPMX19_04016

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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309,786 - MPMX19_04014 0.12 -1.0
309,786 - MPMX19_04014 0.12 +0.3
309,825 - MPMX19_04014 0.16 -0.8
309,825 - MPMX19_04014 0.16 +0.0
309,862 + MPMX19_04014 0.20 -0.4
309,863 - MPMX19_04014 0.20 +0.1
309,863 - MPMX19_04014 0.20 -0.3
309,896 + MPMX19_04014 0.23 +0.0
309,896 + MPMX19_04014 0.23 +0.0
309,896 + MPMX19_04014 0.23 +0.3
309,900 + MPMX19_04014 0.24 +0.0
309,900 + MPMX19_04014 0.24 -0.3
309,901 - MPMX19_04014 0.24 -0.5
309,903 - MPMX19_04014 0.24 +0.6
309,945 + MPMX19_04014 0.28 -1.7
309,945 + MPMX19_04014 0.28 +0.3
309,983 + MPMX19_04014 0.32 -1.5
309,985 + MPMX19_04014 0.33 -1.4
309,985 + MPMX19_04014 0.33 -0.5
309,986 - MPMX19_04014 0.33 +0.2
309,986 - MPMX19_04014 0.33 +0.0
310,077 - MPMX19_04014 0.42 -1.2
310,103 - MPMX19_04014 0.45 +0.6
310,103 - MPMX19_04014 0.45 +0.5
310,166 + MPMX19_04014 0.52 -0.9
310,167 - MPMX19_04014 0.52 +0.9
310,372 + MPMX19_04014 0.73 +1.0
310,407 + MPMX19_04014 0.77 -0.7
310,407 + MPMX19_04014 0.77 +0.5
310,407 + MPMX19_04014 0.77 -1.1
310,407 + MPMX19_04014 0.77 -1.0
310,408 - MPMX19_04014 0.77 -0.4
310,408 - MPMX19_04014 0.77 +0.6
310,408 - MPMX19_04014 0.77 +0.4
310,408 - MPMX19_04014 0.77 +0.0
310,411 + MPMX19_04014 0.77 -0.5
310,411 + MPMX19_04014 0.77 -0.3
310,411 + MPMX19_04014 0.77 -1.0
310,411 + MPMX19_04014 0.77 +1.0
310,411 + MPMX19_04014 0.77 +0.0
310,411 + MPMX19_04014 0.77 -2.1
310,411 + MPMX19_04014 0.77 -1.0
310,411 + MPMX19_04014 0.77 +1.0
310,411 + MPMX19_04014 0.77 +1.4
310,411 + MPMX19_04014 0.77 -1.4
310,411 + MPMX19_04014 0.77 -0.4
310,412 - MPMX19_04014 0.77 +1.0
310,412 - MPMX19_04014 0.77 -0.7
310,412 - MPMX19_04014 0.77 -1.8
310,412 - MPMX19_04014 0.77 +0.0
310,412 - MPMX19_04014 0.77 +1.2
310,412 - MPMX19_04014 0.77 -0.1
310,412 - MPMX19_04014 0.77 -0.5
310,412 - MPMX19_04014 0.77 +0.6
310,412 - MPMX19_04014 0.77 -1.8
310,412 - MPMX19_04014 0.77 -1.4
310,412 - MPMX19_04014 0.77 +0.8
310,416 + MPMX19_04014 0.78 +0.2
310,416 + MPMX19_04014 0.78 -0.8
310,416 + MPMX19_04014 0.78 +0.6
310,416 + MPMX19_04014 0.78 +0.0
310,417 - MPMX19_04014 0.78 +0.2
310,417 - MPMX19_04014 0.78 -0.4
310,445 + MPMX19_04014 0.81 -0.1
310,498 + MPMX19_04014 0.87 -1.5
310,499 - MPMX19_04014 0.87 -0.2
310,561 + -1.9
310,574 + -3.0
310,639 + -0.4
310,714 + -0.4
310,717 + -0.0
310,718 - +0.4
310,718 - -0.6
310,786 + -0.8
310,787 - -1.8
310,967 + MPMX19_04015 0.23 -0.0
310,967 + MPMX19_04015 0.23 +0.7
310,967 + MPMX19_04015 0.23 -1.2
310,967 + MPMX19_04015 0.23 +0.0
310,968 - MPMX19_04015 0.23 +0.6
310,968 - MPMX19_04015 0.23 +1.6
310,968 - MPMX19_04015 0.23 +0.0
310,968 - MPMX19_04015 0.23 -2.0
310,968 - MPMX19_04015 0.23 -0.2
310,968 - MPMX19_04015 0.23 +0.8
310,968 - MPMX19_04015 0.23 +0.2
310,968 - MPMX19_04015 0.23 -1.3
310,989 - MPMX19_04015 0.25 +1.3
310,989 - MPMX19_04015 0.25 -0.2
310,989 - MPMX19_04015 0.25 -1.2
310,989 - MPMX19_04015 0.25 -0.7
311,030 + MPMX19_04015 0.29 -0.2
311,030 + MPMX19_04015 0.29 -1.4
311,030 + MPMX19_04015 0.29 +0.2
311,030 + MPMX19_04015 0.29 -1.0
311,030 + MPMX19_04015 0.29 +0.4
311,030 + MPMX19_04015 0.29 -0.3
311,030 + MPMX19_04015 0.29 +0.3
311,030 + MPMX19_04015 0.29 -0.4
311,030 + MPMX19_04015 0.29 -0.1
311,030 + MPMX19_04015 0.29 -0.5
311,030 + MPMX19_04015 0.29 +0.8
311,030 + MPMX19_04015 0.29 +1.0
311,030 + MPMX19_04015 0.29 -0.2
311,030 + MPMX19_04015 0.29 +0.3
311,030 + MPMX19_04015 0.29 +3.0
311,030 + MPMX19_04015 0.29 +0.7
311,030 + MPMX19_04015 0.29 +0.1
311,030 + MPMX19_04015 0.29 -1.0
311,030 + MPMX19_04015 0.29 -0.8
311,030 + MPMX19_04015 0.29 -1.6
311,030 + MPMX19_04015 0.29 -1.5
311,031 - MPMX19_04015 0.30 +0.6
311,031 - MPMX19_04015 0.30 -1.7
311,031 - MPMX19_04015 0.30 +0.4
311,031 - MPMX19_04015 0.30 +0.5
311,031 - MPMX19_04015 0.30 +0.3
311,031 - MPMX19_04015 0.30 +0.2
311,031 - MPMX19_04015 0.30 +0.1
311,031 - MPMX19_04015 0.30 -1.2
311,031 - MPMX19_04015 0.30 -1.5
311,031 - MPMX19_04015 0.30 +1.6
311,031 - MPMX19_04015 0.30 -0.7
311,031 - MPMX19_04015 0.30 +0.0
311,031 - MPMX19_04015 0.30 -0.4
311,031 - MPMX19_04015 0.30 -1.1
311,057 + MPMX19_04015 0.32 +0.0
311,057 + MPMX19_04015 0.32 -0.4
311,057 + MPMX19_04015 0.32 -0.4
311,057 + MPMX19_04015 0.32 -1.7
311,058 - MPMX19_04015 0.32 +0.4
311,058 - MPMX19_04015 0.32 -0.1
311,058 - MPMX19_04015 0.32 +0.2
311,058 - MPMX19_04015 0.32 +1.0
311,058 - MPMX19_04015 0.32 +0.6
311,058 - MPMX19_04015 0.32 -2.5
311,411 + MPMX19_04015 0.67 +0.0
311,411 + MPMX19_04015 0.67 -0.2
311,411 + MPMX19_04015 0.67 -1.0
311,411 + MPMX19_04015 0.67 -1.1
311,411 + MPMX19_04015 0.67 -0.4
311,412 - MPMX19_04015 0.68 -2.5
311,412 - MPMX19_04015 0.68 -0.2
311,412 - MPMX19_04015 0.68 -0.9
311,724 + -0.6
311,724 + -1.5
311,725 - -1.3
311,725 - -1.5
311,899 + MPMX19_04016 0.17 -0.6
311,899 + MPMX19_04016 0.17 -1.0
311,899 + MPMX19_04016 0.17 -1.0
311,899 + MPMX19_04016 0.17 +0.0
311,899 + MPMX19_04016 0.17 -1.8
311,899 + MPMX19_04016 0.17 -0.4
311,899 + MPMX19_04016 0.17 -0.3
311,900 - MPMX19_04016 0.17 +1.3
311,900 - MPMX19_04016 0.17 -1.7
311,900 - MPMX19_04016 0.17 -0.4
311,900 - MPMX19_04016 0.17 +0.2
311,900 - MPMX19_04016 0.17 +0.0
311,900 - MPMX19_04016 0.17 -0.6
311,965 + MPMX19_04016 0.23 -0.4
311,965 + MPMX19_04016 0.23 +0.3
311,965 + MPMX19_04016 0.23 -0.4
311,965 + MPMX19_04016 0.23 -0.3
311,965 + MPMX19_04016 0.23 +0.4
311,965 + MPMX19_04016 0.23 +1.2
311,965 + MPMX19_04016 0.23 -1.0
311,965 + MPMX19_04016 0.23 +0.4
311,965 + MPMX19_04016 0.23 -1.5
311,965 + MPMX19_04016 0.23 +1.0
311,965 + MPMX19_04016 0.23 -1.0
311,966 - MPMX19_04016 0.23 -1.4
311,966 - MPMX19_04016 0.23 -0.7
312,028 + MPMX19_04016 0.29 -0.2
312,028 + MPMX19_04016 0.29 -0.1
312,028 + MPMX19_04016 0.29 -1.4
312,029 - MPMX19_04016 0.29 -0.2
312,029 - MPMX19_04016 0.29 +1.0
312,029 - MPMX19_04016 0.29 -1.4
312,029 - MPMX19_04016 0.29 +1.0
312,029 - MPMX19_04016 0.29 -0.7
312,029 - MPMX19_04016 0.29 -1.9
312,029 - MPMX19_04016 0.29 +0.3
312,029 - MPMX19_04016 0.29 -0.3
312,029 - MPMX19_04016 0.29 -0.6
312,029 - MPMX19_04016 0.29 -0.9
312,029 - MPMX19_04016 0.29 -0.3
312,029 - MPMX19_04016 0.29 -0.9
312,029 - MPMX19_04016 0.29 +0.2
312,262 + MPMX19_04016 0.53 -0.5
312,358 + MPMX19_04016 0.62 -2.2
312,359 - MPMX19_04016 0.62 -2.1
312,359 - MPMX19_04016 0.62 +0.0
312,394 + MPMX19_04016 0.66 -1.2
312,394 + MPMX19_04016 0.66 -0.8
312,394 + MPMX19_04016 0.66 +0.5
312,394 + MPMX19_04016 0.66 +0.5
312,394 + MPMX19_04016 0.66 +1.1
312,394 + MPMX19_04016 0.66 +0.0
312,394 + MPMX19_04016 0.66 -2.6
312,394 + MPMX19_04016 0.66 -1.3
312,394 + MPMX19_04016 0.66 -0.3
312,395 - MPMX19_04016 0.66 -1.3
312,395 - MPMX19_04016 0.66 +0.1
312,395 - MPMX19_04016 0.66 -1.0
312,395 - MPMX19_04016 0.66 -2.5

Or see this region's nucleotide sequence