Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02890 and MPMX19_02891 are separated by 33 nucleotides MPMX19_02891 and MPMX19_02892 are separated by 316 nucleotides
MPMX19_02890: MPMX19_02890 - Glucarate dehydratase, at 142,256 to 143,593
_02890
MPMX19_02891: MPMX19_02891 - Mannonate dehydratase, at 143,627 to 144,715
_02891
MPMX19_02892: MPMX19_02892 - IS1380 family transposase ISAzs25, at 145,032 to 146,372
_02892
Position (kb) 143
144
145 Strain fitness (log2 ratio) -2
-1
0
1
2 at 142.821 kb on + strand, within MPMX19_02890 at 142.821 kb on + strand, within MPMX19_02890 at 142.821 kb on + strand, within MPMX19_02890 at 142.822 kb on - strand, within MPMX19_02890 at 143.136 kb on + strand, within MPMX19_02890 at 143.136 kb on + strand, within MPMX19_02890 at 143.136 kb on + strand, within MPMX19_02890 at 143.136 kb on + strand, within MPMX19_02890 at 143.136 kb on + strand, within MPMX19_02890 at 143.136 kb on + strand, within MPMX19_02890 at 143.136 kb on + strand, within MPMX19_02890 at 143.136 kb on + strand, within MPMX19_02890 at 143.137 kb on - strand, within MPMX19_02890 at 143.137 kb on - strand, within MPMX19_02890 at 143.137 kb on - strand, within MPMX19_02890 at 143.137 kb on - strand, within MPMX19_02890 at 143.137 kb on - strand, within MPMX19_02890 at 143.137 kb on - strand, within MPMX19_02890 at 143.137 kb on - strand, within MPMX19_02890 at 143.137 kb on - strand, within MPMX19_02890 at 143.137 kb on - strand, within MPMX19_02890 at 143.145 kb on + strand, within MPMX19_02890 at 143.145 kb on + strand, within MPMX19_02890 at 143.145 kb on + strand, within MPMX19_02890 at 143.145 kb on + strand, within MPMX19_02890 at 143.146 kb on - strand, within MPMX19_02890 at 143.490 kb on + strand at 143.490 kb on + strand at 143.490 kb on + strand at 143.490 kb on + strand at 143.491 kb on - strand at 143.491 kb on - strand at 143.653 kb on + strand at 143.654 kb on - strand at 143.655 kb on + strand at 143.656 kb on - strand at 143.739 kb on + strand, within MPMX19_02891 at 143.740 kb on - strand, within MPMX19_02891 at 143.820 kb on + strand, within MPMX19_02891 at 143.821 kb on - strand, within MPMX19_02891 at 143.821 kb on - strand, within MPMX19_02891 at 143.821 kb on - strand, within MPMX19_02891 at 143.857 kb on + strand, within MPMX19_02891 at 143.857 kb on + strand, within MPMX19_02891 at 143.858 kb on - strand, within MPMX19_02891 at 143.858 kb on - strand, within MPMX19_02891 at 144.123 kb on + strand, within MPMX19_02891 at 144.123 kb on + strand, within MPMX19_02891 at 144.123 kb on + strand, within MPMX19_02891 at 144.123 kb on + strand, within MPMX19_02891 at 144.124 kb on - strand, within MPMX19_02891 at 144.124 kb on - strand, within MPMX19_02891 at 144.124 kb on - strand, within MPMX19_02891 at 144.268 kb on - strand, within MPMX19_02891 at 144.268 kb on - strand, within MPMX19_02891 at 144.297 kb on + strand, within MPMX19_02891 at 144.297 kb on + strand, within MPMX19_02891 at 144.297 kb on + strand, within MPMX19_02891 at 144.297 kb on + strand, within MPMX19_02891 at 144.298 kb on - strand, within MPMX19_02891 at 144.298 kb on - strand, within MPMX19_02891 at 144.298 kb on - strand, within MPMX19_02891 at 144.298 kb on - strand, within MPMX19_02891 at 144.384 kb on + strand, within MPMX19_02891 at 144.385 kb on - strand, within MPMX19_02891 at 144.385 kb on - strand, within MPMX19_02891 at 144.385 kb on - strand, within MPMX19_02891 at 144.709 kb on + strand at 144.710 kb on - strand at 144.710 kb on - strand at 144.711 kb on + strand at 144.711 kb on + strand at 144.711 kb on + strand at 144.711 kb on + strand at 144.711 kb on + strand at 144.711 kb on + strand at 144.711 kb on + strand at 144.711 kb on + strand at 144.711 kb on + strand at 144.711 kb on + strand at 144.711 kb on + strand at 144.711 kb on + strand at 144.711 kb on + strand at 144.711 kb on + strand at 144.711 kb on + strand at 144.711 kb on + strand at 144.711 kb on + strand at 144.711 kb on + strand at 144.711 kb on + strand at 144.711 kb on + strand at 144.711 kb on + strand at 144.711 kb on + strand at 144.711 kb on + strand at 144.711 kb on + strand at 144.711 kb on + strand at 144.711 kb on + strand at 144.711 kb on + strand at 144.711 kb on + strand at 144.711 kb on + strand at 144.711 kb on + strand at 144.711 kb on + strand at 144.711 kb on + strand at 144.712 kb on - strand at 144.712 kb on - strand at 144.712 kb on - strand at 144.712 kb on - strand at 144.712 kb on - strand at 144.712 kb on - strand at 144.712 kb on - strand at 144.712 kb on - strand at 144.712 kb on - strand at 144.712 kb on - strand at 144.712 kb on - strand at 144.712 kb on - strand at 144.712 kb on - strand at 144.712 kb on - strand at 144.712 kb on - strand at 144.712 kb on - strand at 144.712 kb on - strand at 144.712 kb on - strand at 144.712 kb on - strand at 144.712 kb on - strand at 144.712 kb on - strand at 144.712 kb on - strand at 144.712 kb on - strand at 144.712 kb on - strand at 144.712 kb on - strand at 144.712 kb on - strand at 144.712 kb on - strand at 144.712 kb on - strand at 144.712 kb on - strand at 144.712 kb on - strand at 144.815 kb on + strand at 144.815 kb on + strand at 144.815 kb on + strand at 144.815 kb on + strand at 144.871 kb on - strand at 144.871 kb on - strand at 144.871 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 142,821 + MPMX19_02890 0.42 -0.7 142,821 + MPMX19_02890 0.42 +0.7 142,821 + MPMX19_02890 0.42 -0.2 142,822 - MPMX19_02890 0.42 +0.3 143,136 + MPMX19_02890 0.66 -1.2 143,136 + MPMX19_02890 0.66 -0.3 143,136 + MPMX19_02890 0.66 -1.1 143,136 + MPMX19_02890 0.66 -2.0 143,136 + MPMX19_02890 0.66 +0.7 143,136 + MPMX19_02890 0.66 -1.2 143,136 + MPMX19_02890 0.66 -0.7 143,136 + MPMX19_02890 0.66 +0.1 143,137 - MPMX19_02890 0.66 -0.4 143,137 - MPMX19_02890 0.66 -0.6 143,137 - MPMX19_02890 0.66 +0.8 143,137 - MPMX19_02890 0.66 -0.8 143,137 - MPMX19_02890 0.66 +0.0 143,137 - MPMX19_02890 0.66 +0.0 143,137 - MPMX19_02890 0.66 -0.3 143,137 - MPMX19_02890 0.66 -1.1 143,137 - MPMX19_02890 0.66 +1.0 143,145 + MPMX19_02890 0.66 -1.0 143,145 + MPMX19_02890 0.66 -2.1 143,145 + MPMX19_02890 0.66 -0.7 143,145 + MPMX19_02890 0.66 -1.1 143,146 - MPMX19_02890 0.67 -0.3 143,490 + +0.8 143,490 + +1.0 143,490 + +1.2 143,490 + -0.5 143,491 - +0.0 143,491 - -0.5 143,653 + -0.1 143,654 - +0.1 143,655 + +0.6 143,656 - +0.5 143,739 + MPMX19_02891 0.10 +0.2 143,740 - MPMX19_02891 0.10 +0.5 143,820 + MPMX19_02891 0.18 +0.2 143,821 - MPMX19_02891 0.18 +0.7 143,821 - MPMX19_02891 0.18 -1.4 143,821 - MPMX19_02891 0.18 +0.9 143,857 + MPMX19_02891 0.21 -0.2 143,857 + MPMX19_02891 0.21 +0.2 143,858 - MPMX19_02891 0.21 -1.2 143,858 - MPMX19_02891 0.21 -0.4 144,123 + MPMX19_02891 0.46 -1.0 144,123 + MPMX19_02891 0.46 -1.8 144,123 + MPMX19_02891 0.46 -0.6 144,123 + MPMX19_02891 0.46 -0.4 144,124 - MPMX19_02891 0.46 +0.6 144,124 - MPMX19_02891 0.46 +0.1 144,124 - MPMX19_02891 0.46 -0.8 144,268 - MPMX19_02891 0.59 -0.9 144,268 - MPMX19_02891 0.59 +0.6 144,297 + MPMX19_02891 0.62 -1.3 144,297 + MPMX19_02891 0.62 -0.4 144,297 + MPMX19_02891 0.62 +1.2 144,297 + MPMX19_02891 0.62 +1.6 144,298 - MPMX19_02891 0.62 +0.4 144,298 - MPMX19_02891 0.62 +0.9 144,298 - MPMX19_02891 0.62 -0.8 144,298 - MPMX19_02891 0.62 +0.1 144,384 + MPMX19_02891 0.70 -1.1 144,385 - MPMX19_02891 0.70 +0.1 144,385 - MPMX19_02891 0.70 -0.7 144,385 - MPMX19_02891 0.70 +0.1 144,709 + +0.0 144,710 - +1.3 144,710 - -0.4 144,711 + -1.4 144,711 + +0.2 144,711 + -0.2 144,711 + +0.1 144,711 + -0.5 144,711 + -0.4 144,711 + +0.6 144,711 + -0.7 144,711 + +0.2 144,711 + -0.1 144,711 + +0.5 144,711 + -1.2 144,711 + +1.4 144,711 + +0.7 144,711 + -0.7 144,711 + -1.7 144,711 + -2.4 144,711 + +1.6 144,711 + -0.3 144,711 + -1.1 144,711 + -0.7 144,711 + -1.7 144,711 + -0.7 144,711 + +0.4 144,711 + +0.2 144,711 + -0.1 144,711 + -0.1 144,711 + -0.3 144,711 + -0.6 144,711 + -0.7 144,711 + -1.6 144,711 + +0.8 144,712 - -0.4 144,712 - -1.1 144,712 - -1.4 144,712 - -0.2 144,712 - -1.6 144,712 - +1.3 144,712 - -2.2 144,712 - -1.2 144,712 - -2.0 144,712 - +1.9 144,712 - +0.2 144,712 - -0.7 144,712 - -0.7 144,712 - -0.8 144,712 - +0.6 144,712 - -0.5 144,712 - +0.6 144,712 - -1.0 144,712 - -2.0 144,712 - +0.6 144,712 - +0.5 144,712 - +0.6 144,712 - +1.1 144,712 - +0.3 144,712 - +0.5 144,712 - -1.0 144,712 - +1.3 144,712 - -1.7 144,712 - +0.1 144,712 - -0.5 144,815 + +1.0 144,815 + +0.7 144,815 + +0.5 144,815 + -0.6 144,871 - -2.0 144,871 - +0.6 144,871 - -2.2
Or see this region's nucleotide sequence