Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS15325 and HMPREF1078_RS15330 are separated by 181 nucleotides HMPREF1078_RS15330 and HMPREF1078_RS15335 are separated by 77 nucleotides HMPREF1078_RS15335 and HMPREF1078_RS15340 are separated by 262 nucleotides
HMPREF1078_RS15325: HMPREF1078_RS15325 - bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase, at 151,698 to 153,209
_RS15325
HMPREF1078_RS15330: HMPREF1078_RS15330 - tRNA-Gly, at 153,391 to 153,463
_RS15330
HMPREF1078_RS15335: HMPREF1078_RS15335 - acetylglutamate kinase, at 153,541 to 154,308
_RS15335
HMPREF1078_RS15340: HMPREF1078_RS15340 - ATP-binding cassette domain-containing protein, at 154,571 to 156,040
_RS15340
Position (kb) 153
154
155 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 152.560 kb on - strand, within HMPREF1078_RS15325 at 152.587 kb on - strand, within HMPREF1078_RS15325 at 152.765 kb on + strand, within HMPREF1078_RS15325 at 152.765 kb on + strand, within HMPREF1078_RS15325 at 152.767 kb on + strand, within HMPREF1078_RS15325 at 152.767 kb on + strand, within HMPREF1078_RS15325 at 152.768 kb on - strand, within HMPREF1078_RS15325 at 152.768 kb on - strand, within HMPREF1078_RS15325 at 152.768 kb on - strand, within HMPREF1078_RS15325 at 152.773 kb on - strand, within HMPREF1078_RS15325 at 153.054 kb on + strand, within HMPREF1078_RS15325 at 153.054 kb on + strand, within HMPREF1078_RS15325 at 153.063 kb on - strand at 153.102 kb on - strand at 153.106 kb on - strand at 153.124 kb on - strand at 153.161 kb on + strand at 153.163 kb on + strand at 153.164 kb on - strand at 153.164 kb on - strand at 153.168 kb on - strand at 153.185 kb on + strand at 153.186 kb on - strand at 153.199 kb on - strand at 153.199 kb on - strand at 153.204 kb on + strand at 153.209 kb on + strand at 153.210 kb on - strand at 153.210 kb on - strand at 153.214 kb on - strand at 153.214 kb on - strand at 153.241 kb on - strand at 153.248 kb on + strand at 153.249 kb on - strand at 153.257 kb on + strand at 153.287 kb on - strand at 153.320 kb on - strand at 153.443 kb on + strand, within HMPREF1078_RS15330 at 153.458 kb on + strand at 153.534 kb on + strand at 153.536 kb on + strand at 153.537 kb on - strand at 153.537 kb on - strand at 153.552 kb on - strand at 153.630 kb on - strand, within HMPREF1078_RS15335 at 153.630 kb on - strand, within HMPREF1078_RS15335 at 153.639 kb on + strand, within HMPREF1078_RS15335 at 153.640 kb on - strand, within HMPREF1078_RS15335 at 153.757 kb on - strand, within HMPREF1078_RS15335 at 153.757 kb on - strand, within HMPREF1078_RS15335 at 153.812 kb on + strand, within HMPREF1078_RS15335 at 153.817 kb on - strand, within HMPREF1078_RS15335 at 153.893 kb on - strand, within HMPREF1078_RS15335 at 153.893 kb on - strand, within HMPREF1078_RS15335 at 153.957 kb on + strand, within HMPREF1078_RS15335 at 154.002 kb on + strand, within HMPREF1078_RS15335 at 154.002 kb on + strand, within HMPREF1078_RS15335 at 154.003 kb on - strand, within HMPREF1078_RS15335 at 154.003 kb on - strand, within HMPREF1078_RS15335 at 154.003 kb on - strand, within HMPREF1078_RS15335 at 154.011 kb on + strand, within HMPREF1078_RS15335 at 154.145 kb on + strand, within HMPREF1078_RS15335 at 154.153 kb on - strand, within HMPREF1078_RS15335 at 154.169 kb on - strand, within HMPREF1078_RS15335 at 154.207 kb on - strand, within HMPREF1078_RS15335 at 154.371 kb on + strand at 154.376 kb on - strand at 154.390 kb on + strand at 154.390 kb on + strand at 154.391 kb on - strand at 154.391 kb on - strand at 154.401 kb on + strand at 154.401 kb on + strand at 154.410 kb on + strand at 154.410 kb on + strand at 154.446 kb on - strand at 154.446 kb on - strand at 154.446 kb on - strand at 154.464 kb on - strand at 154.482 kb on + strand at 154.482 kb on + strand at 154.482 kb on + strand at 154.482 kb on + strand at 154.483 kb on - strand at 154.483 kb on - strand at 154.483 kb on - strand at 154.484 kb on + strand at 154.484 kb on + strand at 154.485 kb on - strand at 154.493 kb on + strand at 154.493 kb on + strand at 154.493 kb on + strand at 154.494 kb on - strand at 154.499 kb on + strand at 154.499 kb on + strand at 154.506 kb on + strand at 154.507 kb on - strand at 154.558 kb on + strand at 154.659 kb on + strand at 154.659 kb on + strand at 154.659 kb on + strand at 154.790 kb on - strand, within HMPREF1078_RS15340 at 154.804 kb on + strand, within HMPREF1078_RS15340 at 154.814 kb on - strand, within HMPREF1078_RS15340 at 154.823 kb on + strand, within HMPREF1078_RS15340 at 154.823 kb on + strand, within HMPREF1078_RS15340 at 154.823 kb on + strand, within HMPREF1078_RS15340 at 154.824 kb on - strand, within HMPREF1078_RS15340 at 154.824 kb on - strand, within HMPREF1078_RS15340 at 154.824 kb on - strand, within HMPREF1078_RS15340 at 154.844 kb on - strand, within HMPREF1078_RS15340 at 154.851 kb on - strand, within HMPREF1078_RS15340 at 154.900 kb on - strand, within HMPREF1078_RS15340 at 154.906 kb on + strand, within HMPREF1078_RS15340 at 154.916 kb on - strand, within HMPREF1078_RS15340 at 154.950 kb on + strand, within HMPREF1078_RS15340 at 154.950 kb on + strand, within HMPREF1078_RS15340 at 154.965 kb on + strand, within HMPREF1078_RS15340 at 154.966 kb on - strand, within HMPREF1078_RS15340 at 155.035 kb on + strand, within HMPREF1078_RS15340 at 155.035 kb on + strand, within HMPREF1078_RS15340 at 155.036 kb on - strand, within HMPREF1078_RS15340 at 155.065 kb on - strand, within HMPREF1078_RS15340 at 155.185 kb on + strand, within HMPREF1078_RS15340 at 155.188 kb on - strand, within HMPREF1078_RS15340 at 155.201 kb on - strand, within HMPREF1078_RS15340 at 155.280 kb on + strand, within HMPREF1078_RS15340 at 155.290 kb on - strand, within HMPREF1078_RS15340
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 152,560 - HMPREF1078_RS15325 0.57 -0.7 152,587 - HMPREF1078_RS15325 0.59 -0.5 152,765 + HMPREF1078_RS15325 0.71 -0.4 152,765 + HMPREF1078_RS15325 0.71 -2.0 152,767 + HMPREF1078_RS15325 0.71 -3.0 152,767 + HMPREF1078_RS15325 0.71 +1.2 152,768 - HMPREF1078_RS15325 0.71 -2.4 152,768 - HMPREF1078_RS15325 0.71 -0.0 152,768 - HMPREF1078_RS15325 0.71 +0.2 152,773 - HMPREF1078_RS15325 0.71 -2.5 153,054 + HMPREF1078_RS15325 0.90 +1.2 153,054 + HMPREF1078_RS15325 0.90 -1.0 153,063 - -0.4 153,102 - -1.5 153,106 - -0.4 153,124 - -1.3 153,161 + -2.4 153,163 + -1.7 153,164 - -0.9 153,164 - -2.8 153,168 - +0.8 153,185 + +0.8 153,186 - -2.2 153,199 - -2.4 153,199 - +0.5 153,204 + -1.2 153,209 + -0.2 153,210 - -2.0 153,210 - -0.7 153,214 - -1.2 153,214 - -1.8 153,241 - +0.9 153,248 + -0.7 153,249 - +0.1 153,257 + +0.9 153,287 - +0.6 153,320 - -0.2 153,443 + HMPREF1078_RS15330 0.71 +0.2 153,458 + -0.8 153,534 + -0.0 153,536 + -2.0 153,537 - -3.4 153,537 - -1.4 153,552 - -2.5 153,630 - HMPREF1078_RS15335 0.12 -1.4 153,630 - HMPREF1078_RS15335 0.12 -3.0 153,639 + HMPREF1078_RS15335 0.13 -3.2 153,640 - HMPREF1078_RS15335 0.13 -1.2 153,757 - HMPREF1078_RS15335 0.28 -0.2 153,757 - HMPREF1078_RS15335 0.28 -3.6 153,812 + HMPREF1078_RS15335 0.35 -1.3 153,817 - HMPREF1078_RS15335 0.36 -2.2 153,893 - HMPREF1078_RS15335 0.46 -2.0 153,893 - HMPREF1078_RS15335 0.46 -3.2 153,957 + HMPREF1078_RS15335 0.54 -1.6 154,002 + HMPREF1078_RS15335 0.60 +0.1 154,002 + HMPREF1078_RS15335 0.60 -4.3 154,003 - HMPREF1078_RS15335 0.60 -1.5 154,003 - HMPREF1078_RS15335 0.60 -3.4 154,003 - HMPREF1078_RS15335 0.60 -4.3 154,011 + HMPREF1078_RS15335 0.61 -2.4 154,145 + HMPREF1078_RS15335 0.79 -0.7 154,153 - HMPREF1078_RS15335 0.80 -2.6 154,169 - HMPREF1078_RS15335 0.82 -2.0 154,207 - HMPREF1078_RS15335 0.87 -2.6 154,371 + -2.3 154,376 - -0.5 154,390 + -0.5 154,390 + +0.8 154,391 - +1.0 154,391 - -0.2 154,401 + +0.2 154,401 + +0.4 154,410 + -0.4 154,410 + +0.8 154,446 - +0.4 154,446 - -0.4 154,446 - -1.5 154,464 - +0.0 154,482 + +1.0 154,482 + -0.3 154,482 + +0.4 154,482 + -0.7 154,483 - +0.8 154,483 - +0.0 154,483 - -1.0 154,484 + +0.6 154,484 + +1.3 154,485 - -1.4 154,493 + -0.4 154,493 + +0.5 154,493 + +1.2 154,494 - -0.3 154,499 + -1.2 154,499 + +1.0 154,506 + +1.2 154,507 - +0.3 154,558 + -0.6 154,659 + -2.6 154,659 + -0.5 154,659 + -0.7 154,790 - HMPREF1078_RS15340 0.15 +0.3 154,804 + HMPREF1078_RS15340 0.16 +0.5 154,814 - HMPREF1078_RS15340 0.17 +1.1 154,823 + HMPREF1078_RS15340 0.17 -0.1 154,823 + HMPREF1078_RS15340 0.17 +0.4 154,823 + HMPREF1078_RS15340 0.17 -0.1 154,824 - HMPREF1078_RS15340 0.17 -0.2 154,824 - HMPREF1078_RS15340 0.17 +0.7 154,824 - HMPREF1078_RS15340 0.17 +0.4 154,844 - HMPREF1078_RS15340 0.19 -1.4 154,851 - HMPREF1078_RS15340 0.19 -0.9 154,900 - HMPREF1078_RS15340 0.22 -2.7 154,906 + HMPREF1078_RS15340 0.23 +0.1 154,916 - HMPREF1078_RS15340 0.23 +1.2 154,950 + HMPREF1078_RS15340 0.26 +1.1 154,950 + HMPREF1078_RS15340 0.26 -1.4 154,965 + HMPREF1078_RS15340 0.27 +0.5 154,966 - HMPREF1078_RS15340 0.27 +0.6 155,035 + HMPREF1078_RS15340 0.32 -0.2 155,035 + HMPREF1078_RS15340 0.32 -0.9 155,036 - HMPREF1078_RS15340 0.32 -0.3 155,065 - HMPREF1078_RS15340 0.34 +0.6 155,185 + HMPREF1078_RS15340 0.42 +0.7 155,188 - HMPREF1078_RS15340 0.42 -2.3 155,201 - HMPREF1078_RS15340 0.43 -0.4 155,280 + HMPREF1078_RS15340 0.48 -0.2 155,290 - HMPREF1078_RS15340 0.49 -0.8
Or see this region's nucleotide sequence