Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15615

Experiment: Experiment:TE, Melon 5 Main Stem (TE-S-M5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 5 Main Stem (TE-S-M5-MS)
2,959,355	+				+1.3
2,959,610	+		LU632_RS15610	0.25	+1.2
2,959,664	+		LU632_RS15610	0.31	-2.8
2,959,665	-		LU632_RS15610	0.31	-0.0
2,959,665	-		LU632_RS15610	0.31	+0.1
2,959,818	+		LU632_RS15610	0.47	-3.7
2,959,818	+		LU632_RS15610	0.47	-1.9
2,959,819	-		LU632_RS15610	0.47	+0.6
2,959,819	-		LU632_RS15610	0.47	-0.0
2,959,819	-		LU632_RS15610	0.47	-2.2
2,959,819	-		LU632_RS15610	0.47	-0.5
2,959,840	-		LU632_RS15610	0.49	-0.9
2,959,907	+		LU632_RS15610	0.56	-0.9
2,959,944	-		LU632_RS15610	0.60	-0.0
2,959,944	-		LU632_RS15610	0.60	+0.8
2,959,961	+		LU632_RS15610	0.62	+0.1
2,960,069	+		LU632_RS15610	0.73	-0.2
2,960,069	+		LU632_RS15610	0.73	+1.2
2,960,069	+		LU632_RS15610	0.73	-1.5
2,960,070	-		LU632_RS15610	0.73	-0.9
2,960,070	-		LU632_RS15610	0.73	+0.6
2,960,187	+		LU632_RS15610	0.85	+4.3
2,960,189	+		LU632_RS15610	0.85	-1.5
2,960,209	-		LU632_RS15610	0.87	-1.8
2,960,285	-				-1.6
2,960,439	+		LU632_RS15615	0.15	+0.2
2,960,566	-		LU632_RS15615	0.33	+0.5
2,960,789	+		LU632_RS15615	0.63	-1.6
2,960,789	+		LU632_RS15615	0.63	-0.7
2,960,813	+		LU632_RS15615	0.67	-0.4
2,960,842	+		LU632_RS15615	0.71	-0.8
2,960,860	-		LU632_RS15615	0.73	-3.8
2,960,896	+		LU632_RS15615	0.78	-2.4
2,960,950	+		LU632_RS15615	0.85	+1.7
2,960,960	+		LU632_RS15615	0.87	+0.5
2,961,369	+		LU632_RS15620	0.81	-2.1
2,961,452	+				-1.2
2,961,646	+				+0.6
2,961,647	-				+3.1
2,961,650	+				-0.9
2,961,651	-				+0.8
2,961,656	-				-1.6
2,961,666	-				+0.5
2,961,727	+				+0.0
2,961,727	+				-1.8
2,961,728	-				-2.7
2,961,728	-				-1.5
2,961,728	-				+0.5
2,961,748	+				+1.0
2,961,748	+				-0.9
2,961,752	+				-0.7
2,961,753	-				+0.2
2,961,760	+				+1.3
2,961,920	+		LU632_RS15630	0.30	-2.0
2,961,944	+		LU632_RS15630	0.42	-0.9
2,961,980	-		LU632_RS15630	0.60	-1.5
2,962,038	-		LU632_RS15630	0.88	-0.3