Experiment: Experiment:TE, Melon 5 Main Stem (TE-S-M5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ilvI and ilvN are separated by 2 nucleotides ilvN and tnpA are separated by 173 nucleotides tnpA and cra are separated by 219 nucleotides
LU632_RS02885: ilvI - acetolactate synthase 3 large subunit, at 588,114 to 589,838
ilvI
LU632_RS02890: ilvN - acetolactate synthase small subunit, at 589,841 to 590,332
ilvN
LU632_RS02895: tnpA - IS200/IS605 family transposase, at 590,506 to 590,943
tnpA
LU632_RS02900: cra - catabolite repressor/activator, at 591,163 to 592,173
cra
Position (kb) 589
590
591 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 588.914 kb on + strand, within ilvI at 588.914 kb on + strand, within ilvI at 588.914 kb on + strand, within ilvI at 588.915 kb on - strand, within ilvI at 588.981 kb on - strand, within ilvI at 588.993 kb on + strand, within ilvI at 589.019 kb on + strand, within ilvI at 589.026 kb on - strand, within ilvI at 589.070 kb on + strand, within ilvI at 589.217 kb on + strand, within ilvI at 589.327 kb on - strand, within ilvI at 589.476 kb on - strand, within ilvI at 589.476 kb on - strand, within ilvI at 589.503 kb on + strand, within ilvI at 589.504 kb on - strand, within ilvI at 589.523 kb on - strand, within ilvI at 589.525 kb on + strand, within ilvI at 589.571 kb on + strand, within ilvI at 589.578 kb on + strand, within ilvI at 589.579 kb on - strand, within ilvI at 589.579 kb on - strand, within ilvI at 589.602 kb on + strand, within ilvI at 589.602 kb on + strand, within ilvI at 589.603 kb on - strand, within ilvI at 589.603 kb on - strand, within ilvI at 589.603 kb on - strand, within ilvI at 589.603 kb on - strand, within ilvI at 589.603 kb on - strand, within ilvI at 589.664 kb on + strand, within ilvI at 589.665 kb on - strand, within ilvI at 589.758 kb on - strand at 589.771 kb on + strand at 589.771 kb on + strand at 589.771 kb on + strand at 589.836 kb on + strand at 589.836 kb on + strand at 589.837 kb on - strand at 589.887 kb on + strand at 589.888 kb on - strand at 589.888 kb on - strand at 589.888 kb on - strand at 589.923 kb on - strand, within ilvN at 589.928 kb on - strand, within ilvN at 589.928 kb on - strand, within ilvN at 590.098 kb on + strand, within ilvN at 590.099 kb on - strand, within ilvN at 590.142 kb on + strand, within ilvN at 590.143 kb on - strand, within ilvN at 591.006 kb on + strand at 591.070 kb on + strand at 591.071 kb on - strand at 591.074 kb on + strand at 591.074 kb on + strand at 591.075 kb on - strand at 591.079 kb on + strand at 591.197 kb on + strand at 591.217 kb on + strand at 591.217 kb on + strand at 591.217 kb on + strand at 591.218 kb on - strand at 591.218 kb on - strand at 591.218 kb on - strand at 591.295 kb on + strand, within cra at 591.296 kb on - strand, within cra at 591.301 kb on + strand, within cra at 591.301 kb on + strand, within cra at 591.302 kb on - strand, within cra at 591.302 kb on - strand, within cra at 591.302 kb on - strand, within cra at 591.302 kb on - strand, within cra
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 5 Main Stem (TE-S-M5-MS) remove 588,914 + ilvI LU632_RS02885 0.46 -0.6 588,914 + ilvI LU632_RS02885 0.46 -1.6 588,914 + ilvI LU632_RS02885 0.46 +1.6 588,915 - ilvI LU632_RS02885 0.46 +2.7 588,981 - ilvI LU632_RS02885 0.50 +0.8 588,993 + ilvI LU632_RS02885 0.51 +1.9 589,019 + ilvI LU632_RS02885 0.52 -3.7 589,026 - ilvI LU632_RS02885 0.53 +1.0 589,070 + ilvI LU632_RS02885 0.55 -2.1 589,217 + ilvI LU632_RS02885 0.64 +0.1 589,327 - ilvI LU632_RS02885 0.70 +3.2 589,476 - ilvI LU632_RS02885 0.79 +0.6 589,476 - ilvI LU632_RS02885 0.79 -0.4 589,503 + ilvI LU632_RS02885 0.81 -1.5 589,504 - ilvI LU632_RS02885 0.81 +0.4 589,523 - ilvI LU632_RS02885 0.82 -0.8 589,525 + ilvI LU632_RS02885 0.82 -0.4 589,571 + ilvI LU632_RS02885 0.84 +0.6 589,578 + ilvI LU632_RS02885 0.85 +1.5 589,579 - ilvI LU632_RS02885 0.85 -0.2 589,579 - ilvI LU632_RS02885 0.85 +0.9 589,602 + ilvI LU632_RS02885 0.86 -0.6 589,602 + ilvI LU632_RS02885 0.86 +1.2 589,603 - ilvI LU632_RS02885 0.86 -0.9 589,603 - ilvI LU632_RS02885 0.86 +0.1 589,603 - ilvI LU632_RS02885 0.86 -1.1 589,603 - ilvI LU632_RS02885 0.86 -0.7 589,603 - ilvI LU632_RS02885 0.86 +0.6 589,664 + ilvI LU632_RS02885 0.90 +0.5 589,665 - ilvI LU632_RS02885 0.90 -0.3 589,758 - -2.7 589,771 + -0.0 589,771 + -0.4 589,771 + -0.8 589,836 + -1.9 589,836 + -0.5 589,837 - -0.4 589,887 + -2.2 589,888 - +0.5 589,888 - +0.2 589,888 - -2.6 589,923 - ilvN LU632_RS02890 0.17 -2.4 589,928 - ilvN LU632_RS02890 0.18 +0.8 589,928 - ilvN LU632_RS02890 0.18 +2.4 590,098 + ilvN LU632_RS02890 0.52 -0.9 590,099 - ilvN LU632_RS02890 0.52 +3.8 590,142 + ilvN LU632_RS02890 0.61 -1.3 590,143 - ilvN LU632_RS02890 0.61 +2.6 591,006 + -1.3 591,070 + +0.7 591,071 - -1.2 591,074 + +0.2 591,074 + +2.1 591,075 - -3.5 591,079 + +1.7 591,197 + +0.7 591,217 + -0.6 591,217 + +1.0 591,217 + -0.2 591,218 - -3.1 591,218 - +0.6 591,218 - +0.0 591,295 + cra LU632_RS02900 0.13 +1.3 591,296 - cra LU632_RS02900 0.13 -0.0 591,301 + cra LU632_RS02900 0.14 -0.3 591,301 + cra LU632_RS02900 0.14 -1.1 591,302 - cra LU632_RS02900 0.14 +0.3 591,302 - cra LU632_RS02900 0.14 +0.4 591,302 - cra LU632_RS02900 0.14 +1.0 591,302 - cra LU632_RS02900 0.14 +0.4
Or see this region's nucleotide sequence