Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05930

Experiment: Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLU632_RS05920 and LU632_RS05925 are separated by 133 nucleotidesLU632_RS05925 and LU632_RS05930 are separated by 273 nucleotidesLU632_RS05930 and LU632_RS05935 are separated by 193 nucleotidesLU632_RS05935 and LU632_RS05940 are separated by 14 nucleotides LU632_RS05920: LU632_RS05920 - hypothetical protein, at 1,124,778 to 1,125,068 _RS05920 LU632_RS05925: LU632_RS05925 - transcriptional regulator, at 1,125,202 to 1,125,312 _RS05925 LU632_RS05930: LU632_RS05930 - 6-phospho-beta-glucosidase, at 1,125,586 to 1,127,025 _RS05930 LU632_RS05935: LU632_RS05935 - PTS transporter subunit EIIB, at 1,127,219 to 1,127,689 _RS05935 LU632_RS05940: LU632_RS05940 - hemolysin III family protein, at 1,127,704 to 1,128,094 _RS05940 Position (kb) 1125 1126 1127 1128Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1124.635 kb on - strandat 1124.717 kb on + strandat 1124.717 kb on + strandat 1124.717 kb on + strandat 1124.717 kb on + strandat 1124.718 kb on - strandat 1124.813 kb on + strand, within LU632_RS05920at 1124.813 kb on + strand, within LU632_RS05920at 1124.852 kb on - strand, within LU632_RS05920at 1124.852 kb on - strand, within LU632_RS05920at 1124.967 kb on - strand, within LU632_RS05920at 1125.030 kb on - strand, within LU632_RS05920at 1125.030 kb on - strand, within LU632_RS05920at 1125.042 kb on - strandat 1125.122 kb on + strandat 1125.122 kb on + strandat 1125.123 kb on - strandat 1125.123 kb on - strandat 1125.182 kb on - strandat 1125.204 kb on - strandat 1125.279 kb on - strand, within LU632_RS05925at 1125.295 kb on - strand, within LU632_RS05925at 1125.328 kb on - strandat 1125.335 kb on + strandat 1125.357 kb on - strandat 1125.357 kb on - strandat 1125.370 kb on + strandat 1125.370 kb on + strandat 1125.370 kb on + strandat 1125.370 kb on + strandat 1125.371 kb on - strandat 1125.371 kb on - strandat 1125.371 kb on - strandat 1125.371 kb on - strandat 1125.395 kb on - strandat 1125.490 kb on - strandat 1125.534 kb on + strandat 1125.534 kb on + strandat 1125.535 kb on - strandat 1125.621 kb on + strandat 1125.623 kb on + strandat 1125.786 kb on - strand, within LU632_RS05930at 1125.947 kb on + strand, within LU632_RS05930at 1125.948 kb on - strand, within LU632_RS05930at 1126.079 kb on + strand, within LU632_RS05930at 1126.079 kb on + strand, within LU632_RS05930at 1126.080 kb on - strand, within LU632_RS05930at 1126.082 kb on + strand, within LU632_RS05930at 1126.082 kb on + strand, within LU632_RS05930at 1126.087 kb on + strand, within LU632_RS05930at 1126.088 kb on - strand, within LU632_RS05930at 1126.095 kb on + strand, within LU632_RS05930at 1126.096 kb on - strand, within LU632_RS05930at 1126.096 kb on - strand, within LU632_RS05930at 1126.097 kb on + strand, within LU632_RS05930at 1126.098 kb on - strand, within LU632_RS05930at 1126.185 kb on - strand, within LU632_RS05930at 1126.185 kb on - strand, within LU632_RS05930at 1126.193 kb on + strand, within LU632_RS05930at 1126.194 kb on - strand, within LU632_RS05930at 1126.194 kb on - strand, within LU632_RS05930at 1126.194 kb on - strand, within LU632_RS05930at 1126.194 kb on - strand, within LU632_RS05930at 1126.227 kb on - strand, within LU632_RS05930at 1126.394 kb on + strand, within LU632_RS05930at 1126.395 kb on - strand, within LU632_RS05930at 1126.395 kb on - strand, within LU632_RS05930at 1126.395 kb on - strand, within LU632_RS05930at 1126.395 kb on - strand, within LU632_RS05930at 1126.463 kb on + strand, within LU632_RS05930at 1126.473 kb on + strand, within LU632_RS05930at 1126.508 kb on + strand, within LU632_RS05930at 1126.509 kb on - strand, within LU632_RS05930at 1126.509 kb on - strand, within LU632_RS05930at 1126.525 kb on - strand, within LU632_RS05930at 1126.527 kb on - strand, within LU632_RS05930at 1126.638 kb on + strand, within LU632_RS05930at 1126.638 kb on + strand, within LU632_RS05930at 1126.654 kb on - strand, within LU632_RS05930at 1126.658 kb on + strand, within LU632_RS05930at 1126.658 kb on + strand, within LU632_RS05930at 1126.658 kb on + strand, within LU632_RS05930at 1126.659 kb on - strand, within LU632_RS05930at 1126.663 kb on - strand, within LU632_RS05930at 1126.740 kb on + strand, within LU632_RS05930at 1126.741 kb on - strand, within LU632_RS05930at 1126.773 kb on + strand, within LU632_RS05930at 1126.809 kb on + strand, within LU632_RS05930at 1126.821 kb on - strand, within LU632_RS05930at 1126.880 kb on - strand, within LU632_RS05930at 1126.927 kb on - strandat 1126.927 kb on - strandat 1127.015 kb on + strandat 1127.016 kb on - strandat 1127.040 kb on - strandat 1127.043 kb on + strandat 1127.050 kb on + strandat 1127.058 kb on - strandat 1127.180 kb on + strandat 1127.180 kb on + strandat 1127.208 kb on - strandat 1127.231 kb on - strandat 1127.377 kb on + strand, within LU632_RS05935at 1127.398 kb on + strand, within LU632_RS05935at 1127.496 kb on - strand, within LU632_RS05935at 1127.496 kb on - strand, within LU632_RS05935at 1127.496 kb on - strand, within LU632_RS05935at 1127.530 kb on + strand, within LU632_RS05935at 1127.582 kb on + strand, within LU632_RS05935at 1127.707 kb on + strandat 1127.708 kb on - strandat 1127.759 kb on - strand, within LU632_RS05940at 1127.759 kb on - strand, within LU632_RS05940at 1127.819 kb on + strand, within LU632_RS05940at 1127.820 kb on - strand, within LU632_RS05940at 1127.826 kb on + strand, within LU632_RS05940at 1127.837 kb on - strand, within LU632_RS05940at 1127.841 kb on - strand, within LU632_RS05940at 1127.978 kb on + strand, within LU632_RS05940at 1127.978 kb on + strand, within LU632_RS05940at 1127.979 kb on - strand, within LU632_RS05940at 1127.986 kb on - strand, within LU632_RS05940at 1128.010 kb on + strand, within LU632_RS05940at 1128.023 kb on - strand, within LU632_RS05940

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)
remove
1,124,635 - -0.1
1,124,717 + +2.6
1,124,717 + -2.3
1,124,717 + +0.3
1,124,717 + +0.2
1,124,718 - -0.4
1,124,813 + LU632_RS05920 0.12 -0.6
1,124,813 + LU632_RS05920 0.12 +0.1
1,124,852 - LU632_RS05920 0.25 +0.5
1,124,852 - LU632_RS05920 0.25 +0.8
1,124,967 - LU632_RS05920 0.65 +0.5
1,125,030 - LU632_RS05920 0.87 -1.4
1,125,030 - LU632_RS05920 0.87 -1.7
1,125,042 - +0.6
1,125,122 + +0.5
1,125,122 + -1.2
1,125,123 - -0.1
1,125,123 - +0.1
1,125,182 - -1.2
1,125,204 - -1.9
1,125,279 - LU632_RS05925 0.69 -0.9
1,125,295 - LU632_RS05925 0.84 -0.4
1,125,328 - +1.1
1,125,335 + +2.0
1,125,357 - +0.3
1,125,357 - +0.3
1,125,370 + +1.4
1,125,370 + +0.6
1,125,370 + -0.0
1,125,370 + -0.1
1,125,371 - -0.4
1,125,371 - +1.6
1,125,371 - -0.2
1,125,371 - +0.5
1,125,395 - +2.6
1,125,490 - -0.4
1,125,534 + -0.0
1,125,534 + +0.0
1,125,535 - +1.2
1,125,621 + -1.7
1,125,623 + -1.4
1,125,786 - LU632_RS05930 0.14 +0.5
1,125,947 + LU632_RS05930 0.25 -1.4
1,125,948 - LU632_RS05930 0.25 -0.3
1,126,079 + LU632_RS05930 0.34 +0.2
1,126,079 + LU632_RS05930 0.34 +0.2
1,126,080 - LU632_RS05930 0.34 -0.2
1,126,082 + LU632_RS05930 0.34 +1.0
1,126,082 + LU632_RS05930 0.34 +1.1
1,126,087 + LU632_RS05930 0.35 +1.2
1,126,088 - LU632_RS05930 0.35 +1.0
1,126,095 + LU632_RS05930 0.35 -1.0
1,126,096 - LU632_RS05930 0.35 -2.9
1,126,096 - LU632_RS05930 0.35 -1.6
1,126,097 + LU632_RS05930 0.35 +0.1
1,126,098 - LU632_RS05930 0.36 -0.2
1,126,185 - LU632_RS05930 0.42 +0.7
1,126,185 - LU632_RS05930 0.42 -2.2
1,126,193 + LU632_RS05930 0.42 +0.3
1,126,194 - LU632_RS05930 0.42 +0.4
1,126,194 - LU632_RS05930 0.42 +0.4
1,126,194 - LU632_RS05930 0.42 +2.9
1,126,194 - LU632_RS05930 0.42 +1.9
1,126,227 - LU632_RS05930 0.45 -0.3
1,126,394 + LU632_RS05930 0.56 -0.6
1,126,395 - LU632_RS05930 0.56 +0.8
1,126,395 - LU632_RS05930 0.56 +0.8
1,126,395 - LU632_RS05930 0.56 +0.2
1,126,395 - LU632_RS05930 0.56 -1.7
1,126,463 + LU632_RS05930 0.61 +1.2
1,126,473 + LU632_RS05930 0.62 -0.5
1,126,508 + LU632_RS05930 0.64 +0.8
1,126,509 - LU632_RS05930 0.64 -0.9
1,126,509 - LU632_RS05930 0.64 +0.0
1,126,525 - LU632_RS05930 0.65 -1.8
1,126,527 - LU632_RS05930 0.65 +0.5
1,126,638 + LU632_RS05930 0.73 +0.5
1,126,638 + LU632_RS05930 0.73 -0.7
1,126,654 - LU632_RS05930 0.74 +3.0
1,126,658 + LU632_RS05930 0.74 -0.9
1,126,658 + LU632_RS05930 0.74 +1.2
1,126,658 + LU632_RS05930 0.74 +0.6
1,126,659 - LU632_RS05930 0.75 +0.1
1,126,663 - LU632_RS05930 0.75 +1.4
1,126,740 + LU632_RS05930 0.80 +0.3
1,126,741 - LU632_RS05930 0.80 -0.9
1,126,773 + LU632_RS05930 0.82 -0.2
1,126,809 + LU632_RS05930 0.85 -0.8
1,126,821 - LU632_RS05930 0.86 +0.6
1,126,880 - LU632_RS05930 0.90 -0.9
1,126,927 - -0.4
1,126,927 - +1.3
1,127,015 + +0.7
1,127,016 - +0.6
1,127,040 - +0.5
1,127,043 + -0.0
1,127,050 + -0.8
1,127,058 - -1.7
1,127,180 + -0.7
1,127,180 + +0.5
1,127,208 - +0.6
1,127,231 - -1.3
1,127,377 + LU632_RS05935 0.34 -0.9
1,127,398 + LU632_RS05935 0.38 -0.6
1,127,496 - LU632_RS05935 0.59 -1.0
1,127,496 - LU632_RS05935 0.59 +0.6
1,127,496 - LU632_RS05935 0.59 -1.8
1,127,530 + LU632_RS05935 0.66 -3.1
1,127,582 + LU632_RS05935 0.77 -0.9
1,127,707 + +0.2
1,127,708 - -1.8
1,127,759 - LU632_RS05940 0.14 -0.6
1,127,759 - LU632_RS05940 0.14 +2.1
1,127,819 + LU632_RS05940 0.29 -0.7
1,127,820 - LU632_RS05940 0.30 -1.9
1,127,826 + LU632_RS05940 0.31 -1.2
1,127,837 - LU632_RS05940 0.34 -1.2
1,127,841 - LU632_RS05940 0.35 -1.9
1,127,978 + LU632_RS05940 0.70 -1.6
1,127,978 + LU632_RS05940 0.70 +1.2
1,127,979 - LU632_RS05940 0.70 +0.3
1,127,986 - LU632_RS05940 0.72 +0.3
1,128,010 + LU632_RS05940 0.78 -0.7
1,128,023 - LU632_RS05940 0.82 +2.8

Or see this region's nucleotide sequence