Strain Fitness in Escherichia coli ECOR38 around HEPCGN_16025

Experiment: RB23

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RB23
1,976,324	+	nirC	HEPCGN_16015	0.43	+1.1
1,976,325	-	nirC	HEPCGN_16015	0.44	+0.6
1,976,377	+	nirC	HEPCGN_16015	0.50	-0.8
1,976,378	-	nirC	HEPCGN_16015	0.50	-0.1
1,976,382	-	nirC	HEPCGN_16015	0.51	-0.4
1,976,410	+	nirC	HEPCGN_16015	0.54	+0.0
1,976,411	-	nirC	HEPCGN_16015	0.54	+0.1
1,976,411	-	nirC	HEPCGN_16015	0.54	+1.0
1,976,411	-	nirC	HEPCGN_16015	0.54	-0.3
1,976,412	+	nirC	HEPCGN_16015	0.54	-0.3
1,976,413	-	nirC	HEPCGN_16015	0.55	-0.1
1,976,413	-	nirC	HEPCGN_16015	0.55	+1.2
1,976,613	-	nirC	HEPCGN_16015	0.79	+1.4
1,976,670	+	nirC	HEPCGN_16015	0.86	-0.1
1,976,671	-	nirC	HEPCGN_16015	0.86	-0.1
1,976,671	-	nirC	HEPCGN_16015	0.86	-0.5
1,976,764	+				+0.1
1,976,765	-				-0.0
1,976,799	+				-1.3
1,976,846	-				-0.8
1,977,149	-	nirD	HEPCGN_16020	0.75	-0.1
1,977,163	+	nirD	HEPCGN_16020	0.79	+1.7
1,977,374	+				+0.3
1,977,374	+				+0.6
1,977,525	-	nirB	HEPCGN_16025	0.12	-0.4
1,977,553	+	nirB	HEPCGN_16025	0.13	+0.3
1,977,553	+	nirB	HEPCGN_16025	0.13	-1.4
1,977,554	-	nirB	HEPCGN_16025	0.13	-0.4
1,977,554	-	nirB	HEPCGN_16025	0.13	+0.3
1,977,578	-	nirB	HEPCGN_16025	0.14	+0.9
1,977,578	-	nirB	HEPCGN_16025	0.14	-0.9
1,977,659	-	nirB	HEPCGN_16025	0.17	-0.3
1,977,659	-	nirB	HEPCGN_16025	0.17	-0.2
1,977,778	+	nirB	HEPCGN_16025	0.22	-0.3
1,977,864	-	nirB	HEPCGN_16025	0.25	+0.1
1,977,991	+	nirB	HEPCGN_16025	0.30	-0.4
1,978,013	+	nirB	HEPCGN_16025	0.31	+0.2
1,978,079	-	nirB	HEPCGN_16025	0.33	-0.8
1,978,257	-	nirB	HEPCGN_16025	0.40	+1.5
1,978,300	+	nirB	HEPCGN_16025	0.42	+0.6
1,978,301	-	nirB	HEPCGN_16025	0.42	-0.4
1,978,328	+	nirB	HEPCGN_16025	0.43	+0.8
1,978,328	+	nirB	HEPCGN_16025	0.43	-0.1
1,978,523	+	nirB	HEPCGN_16025	0.51	+0.4
1,978,535	+	nirB	HEPCGN_16025	0.51	-0.2
1,978,705	+	nirB	HEPCGN_16025	0.58	+0.3
1,978,705	+	nirB	HEPCGN_16025	0.58	-0.6
1,978,735	+	nirB	HEPCGN_16025	0.59	-0.7
1,978,735	+	nirB	HEPCGN_16025	0.59	+0.1
1,978,735	+	nirB	HEPCGN_16025	0.59	-0.1
1,978,736	-	nirB	HEPCGN_16025	0.59	-1.0
1,978,736	-	nirB	HEPCGN_16025	0.59	-0.1
1,978,739	+	nirB	HEPCGN_16025	0.59	-1.5
1,978,739	+	nirB	HEPCGN_16025	0.59	-0.3
1,978,739	+	nirB	HEPCGN_16025	0.59	-0.5
1,978,739	+	nirB	HEPCGN_16025	0.59	-0.3
1,978,740	-	nirB	HEPCGN_16025	0.59	-0.1
1,978,775	+	nirB	HEPCGN_16025	0.61	-0.7
1,978,776	-	nirB	HEPCGN_16025	0.61	-0.3
1,978,776	-	nirB	HEPCGN_16025	0.61	-0.3
1,978,776	-	nirB	HEPCGN_16025	0.61	+0.1
1,978,776	-	nirB	HEPCGN_16025	0.61	+0.5
1,978,782	+	nirB	HEPCGN_16025	0.61	+1.3
1,978,789	-	nirB	HEPCGN_16025	0.61	+0.5
1,978,789	-	nirB	HEPCGN_16025	0.61	-0.3
1,978,853	+	nirB	HEPCGN_16025	0.64	+0.3
1,978,853	+	nirB	HEPCGN_16025	0.64	-0.5
1,978,882	+	nirB	HEPCGN_16025	0.65	-0.4
1,978,894	-	nirB	HEPCGN_16025	0.65	-1.3
1,978,906	-	nirB	HEPCGN_16025	0.66	-1.5
1,978,942	+	nirB	HEPCGN_16025	0.67	-0.7
1,978,942	+	nirB	HEPCGN_16025	0.67	-0.3
1,978,946	+	nirB	HEPCGN_16025	0.68	-0.4
1,979,063	+	nirB	HEPCGN_16025	0.72	+1.3
1,979,063	+	nirB	HEPCGN_16025	0.72	-1.0
1,979,268	-	nirB	HEPCGN_16025	0.80	-0.0
1,979,268	-	nirB	HEPCGN_16025	0.80	-1.4
1,979,271	+	nirB	HEPCGN_16025	0.80	+0.2
1,979,304	+	nirB	HEPCGN_16025	0.82	-0.4
1,979,478	-	nirB	HEPCGN_16025	0.88	-0.5
1,979,566	+				-0.1
1,979,618	-				-1.5
1,979,632	-				+0.6
1,979,641	+				-1.1
1,979,641	+				-0.9
1,979,641	+				-0.4
1,979,675	+				-0.2
1,979,699	+				-1.1
1,979,717	+				-0.9
1,979,718	-				-0.6
1,979,792	+				-0.6
1,979,795	+				-1.1
1,979,836	+				-0.3
1,979,836	+				-0.9
1,979,973	+				+0.9
1,979,973	+				-0.1
1,979,974	-				+0.3
1,979,974	-				+1.1
1,979,974	-				-0.0
1,979,974	-				+1.1
1,979,974	-				+0.2
1,979,974	-				+0.4
1,979,977	+				-2.1
1,980,053	+				+0.3
1,980,053	+				-0.6
1,980,054	-				-0.5
1,980,113	-				+0.5
1,980,152	+	tsgA	HEPCGN_16030	0.10	+0.3
1,980,191	+	tsgA	HEPCGN_16030	0.13	-1.1
1,980,191	+	tsgA	HEPCGN_16030	0.13	-0.3
1,980,191	+	tsgA	HEPCGN_16030	0.13	+0.2
1,980,191	+	tsgA	HEPCGN_16030	0.13	-1.5
1,980,191	+	tsgA	HEPCGN_16030	0.13	+0.1
1,980,192	-	tsgA	HEPCGN_16030	0.13	-0.5
1,980,192	-	tsgA	HEPCGN_16030	0.13	-1.4
1,980,244	-	tsgA	HEPCGN_16030	0.18	+0.2
1,980,281	+	tsgA	HEPCGN_16030	0.21	-0.2
1,980,283	+	tsgA	HEPCGN_16030	0.21	-2.5
1,980,284	-	tsgA	HEPCGN_16030	0.21	-1.3
1,980,284	-	tsgA	HEPCGN_16030	0.21	-0.5
1,980,284	-	tsgA	HEPCGN_16030	0.21	+2.3
1,980,284	-	tsgA	HEPCGN_16030	0.21	-0.0
1,980,329	+	tsgA	HEPCGN_16030	0.25	-0.6
1,980,329	+	tsgA	HEPCGN_16030	0.25	+0.3
1,980,329	+	tsgA	HEPCGN_16030	0.25	-0.6
1,980,329	+	tsgA	HEPCGN_16030	0.25	-0.3
1,980,329	+	tsgA	HEPCGN_16030	0.25	-0.0
1,980,329	+	tsgA	HEPCGN_16030	0.25	+2.3
1,980,329	+	tsgA	HEPCGN_16030	0.25	-0.3
1,980,330	-	tsgA	HEPCGN_16030	0.25	-0.4
1,980,330	-	tsgA	HEPCGN_16030	0.25	-0.1
1,980,358	+	tsgA	HEPCGN_16030	0.27	+1.2
1,980,398	+	tsgA	HEPCGN_16030	0.31	-1.2
1,980,426	-	tsgA	HEPCGN_16030	0.33	-0.1
1,980,454	+	tsgA	HEPCGN_16030	0.36	-1.5
1,980,454	+	tsgA	HEPCGN_16030	0.36	+0.2
1,980,455	-	tsgA	HEPCGN_16030	0.36	-0.9
1,980,455	-	tsgA	HEPCGN_16030	0.36	-0.6
1,980,455	-	tsgA	HEPCGN_16030	0.36	-0.6
1,980,455	-	tsgA	HEPCGN_16030	0.36	+0.3
1,980,470	+	tsgA	HEPCGN_16030	0.37	+1.3
1,980,471	-	tsgA	HEPCGN_16030	0.37	+0.3
1,980,562	+	tsgA	HEPCGN_16030	0.45	+0.5
1,980,562	+	tsgA	HEPCGN_16030	0.45	-1.1
1,980,563	-	tsgA	HEPCGN_16030	0.45	+0.1
1,980,563	-	tsgA	HEPCGN_16030	0.45	+1.0
1,980,563	-	tsgA	HEPCGN_16030	0.45	-0.3
1,980,683	+	tsgA	HEPCGN_16030	0.55	-0.6
1,980,697	+	tsgA	HEPCGN_16030	0.56	+0.4
1,980,698	-	tsgA	HEPCGN_16030	0.56	-0.1
1,980,698	-	tsgA	HEPCGN_16030	0.56	-0.9
1,980,719	-	tsgA	HEPCGN_16030	0.58	-0.1