Experiment: R2A_PIPES pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_02515 and OKGIIK_02520 are separated by 670 nucleotides OKGIIK_02520 and OKGIIK_02525 are separated by 635 nucleotides
OKGIIK_02515: OKGIIK_02515 - hypothetical protein, at 593,142 to 593,801
_02515
OKGIIK_02520: OKGIIK_02520 - hypothetical protein, at 594,472 to 594,669
_02520
OKGIIK_02525: OKGIIK_02525 - Putative transposase, at 595,305 to 596,099
_02525
Position (kb) 594
595 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 593.472 kb on + strand, within OKGIIK_02515 at 593.472 kb on + strand, within OKGIIK_02515 at 593.472 kb on + strand, within OKGIIK_02515 at 593.472 kb on + strand, within OKGIIK_02515 at 593.472 kb on + strand, within OKGIIK_02515 at 593.472 kb on + strand, within OKGIIK_02515 at 593.472 kb on + strand, within OKGIIK_02515 at 593.473 kb on - strand, within OKGIIK_02515 at 593.473 kb on - strand, within OKGIIK_02515 at 593.473 kb on - strand, within OKGIIK_02515 at 593.473 kb on - strand, within OKGIIK_02515 at 593.473 kb on - strand, within OKGIIK_02515 at 593.473 kb on - strand, within OKGIIK_02515 at 593.473 kb on - strand, within OKGIIK_02515 at 593.473 kb on - strand, within OKGIIK_02515 at 593.473 kb on - strand, within OKGIIK_02515 at 593.473 kb on - strand, within OKGIIK_02515 at 593.473 kb on - strand, within OKGIIK_02515 at 593.473 kb on - strand, within OKGIIK_02515 at 593.473 kb on - strand, within OKGIIK_02515 at 593.485 kb on + strand, within OKGIIK_02515 at 593.485 kb on + strand, within OKGIIK_02515 at 593.485 kb on + strand, within OKGIIK_02515 at 593.485 kb on + strand, within OKGIIK_02515 at 593.485 kb on + strand, within OKGIIK_02515 at 593.485 kb on + strand, within OKGIIK_02515 at 593.485 kb on + strand, within OKGIIK_02515 at 593.486 kb on - strand, within OKGIIK_02515 at 593.486 kb on - strand, within OKGIIK_02515 at 593.486 kb on - strand, within OKGIIK_02515 at 593.486 kb on - strand, within OKGIIK_02515 at 593.486 kb on - strand, within OKGIIK_02515 at 593.486 kb on - strand, within OKGIIK_02515 at 593.486 kb on - strand, within OKGIIK_02515 at 593.489 kb on - strand, within OKGIIK_02515 at 593.535 kb on - strand, within OKGIIK_02515 at 593.535 kb on - strand, within OKGIIK_02515 at 593.577 kb on + strand, within OKGIIK_02515 at 593.577 kb on + strand, within OKGIIK_02515 at 593.578 kb on - strand, within OKGIIK_02515 at 593.578 kb on - strand, within OKGIIK_02515 at 593.578 kb on - strand, within OKGIIK_02515 at 593.578 kb on - strand, within OKGIIK_02515 at 593.639 kb on + strand, within OKGIIK_02515 at 593.639 kb on + strand, within OKGIIK_02515 at 593.639 kb on + strand, within OKGIIK_02515 at 593.639 kb on + strand, within OKGIIK_02515 at 593.639 kb on + strand, within OKGIIK_02515 at 593.640 kb on - strand, within OKGIIK_02515 at 593.640 kb on - strand, within OKGIIK_02515 at 593.640 kb on - strand, within OKGIIK_02515 at 593.674 kb on + strand, within OKGIIK_02515 at 593.674 kb on + strand, within OKGIIK_02515 at 593.674 kb on + strand, within OKGIIK_02515 at 593.674 kb on + strand, within OKGIIK_02515 at 593.675 kb on - strand, within OKGIIK_02515 at 593.687 kb on + strand, within OKGIIK_02515 at 593.687 kb on + strand, within OKGIIK_02515 at 593.688 kb on - strand, within OKGIIK_02515 at 593.688 kb on - strand, within OKGIIK_02515 at 593.688 kb on - strand, within OKGIIK_02515 at 593.688 kb on - strand, within OKGIIK_02515 at 593.695 kb on + strand, within OKGIIK_02515 at 593.695 kb on + strand, within OKGIIK_02515 at 593.696 kb on - strand, within OKGIIK_02515 at 593.696 kb on - strand, within OKGIIK_02515 at 593.696 kb on - strand, within OKGIIK_02515 at 593.696 kb on - strand, within OKGIIK_02515 at 593.696 kb on - strand, within OKGIIK_02515 at 593.740 kb on + strand at 593.740 kb on + strand at 593.740 kb on + strand at 593.740 kb on + strand at 593.740 kb on + strand at 593.740 kb on + strand at 593.740 kb on + strand at 593.740 kb on + strand at 593.741 kb on - strand at 593.741 kb on - strand at 593.741 kb on - strand at 593.771 kb on + strand at 593.771 kb on + strand at 593.771 kb on + strand at 593.772 kb on - strand at 593.772 kb on - strand at 593.772 kb on - strand at 593.772 kb on - strand at 593.823 kb on - strand at 593.867 kb on + strand at 593.869 kb on + strand at 593.869 kb on + strand at 593.869 kb on + strand at 593.869 kb on + strand at 593.869 kb on + strand at 593.869 kb on + strand at 593.869 kb on + strand at 593.870 kb on - strand at 593.870 kb on - strand at 593.870 kb on - strand at 593.870 kb on - strand at 593.870 kb on - strand at 593.904 kb on + strand at 593.904 kb on + strand at 593.904 kb on + strand at 593.904 kb on + strand at 593.904 kb on + strand at 593.904 kb on + strand at 593.904 kb on + strand at 593.904 kb on + strand at 593.904 kb on + strand at 593.904 kb on + strand at 593.904 kb on + strand at 593.904 kb on + strand at 593.904 kb on + strand at 593.905 kb on - strand at 593.905 kb on - strand at 593.905 kb on - strand at 593.905 kb on - strand at 593.905 kb on - strand at 593.905 kb on - strand at 593.905 kb on - strand at 593.905 kb on - strand at 593.905 kb on - strand at 593.905 kb on - strand at 593.917 kb on - strand at 593.917 kb on - strand at 593.979 kb on + strand at 593.979 kb on + strand at 593.980 kb on - strand at 593.980 kb on - strand at 594.015 kb on + strand at 594.015 kb on + strand at 594.015 kb on + strand at 594.015 kb on + strand at 594.015 kb on + strand at 594.015 kb on + strand at 594.015 kb on + strand at 594.015 kb on + strand at 594.016 kb on - strand at 594.016 kb on - strand at 594.016 kb on - strand at 594.016 kb on - strand at 594.016 kb on - strand at 594.016 kb on - strand at 594.070 kb on + strand at 594.071 kb on - strand at 594.071 kb on - strand at 594.071 kb on - strand at 594.119 kb on + strand at 594.119 kb on + strand at 594.119 kb on + strand at 594.119 kb on + strand at 594.119 kb on + strand at 594.119 kb on + strand at 594.119 kb on + strand at 594.119 kb on + strand at 594.119 kb on + strand at 594.120 kb on - strand at 594.120 kb on - strand at 594.120 kb on - strand at 594.120 kb on - strand at 594.131 kb on + strand at 594.131 kb on + strand at 594.131 kb on + strand at 594.131 kb on + strand at 594.131 kb on + strand at 594.131 kb on + strand at 594.132 kb on - strand at 594.132 kb on - strand at 594.132 kb on - strand at 594.132 kb on - strand at 594.132 kb on - strand at 594.183 kb on + strand at 594.183 kb on + strand at 594.183 kb on + strand at 594.183 kb on + strand at 594.183 kb on + strand at 594.183 kb on + strand at 594.183 kb on + strand at 594.183 kb on + strand at 594.183 kb on + strand at 594.183 kb on + strand at 594.183 kb on + strand at 594.184 kb on - strand at 594.184 kb on - strand at 594.184 kb on - strand at 594.184 kb on - strand at 594.261 kb on + strand at 594.261 kb on + strand at 594.261 kb on + strand at 594.261 kb on + strand at 594.262 kb on - strand at 594.262 kb on - strand at 594.262 kb on - strand at 594.262 kb on - strand at 594.262 kb on - strand at 594.271 kb on + strand at 594.271 kb on + strand at 594.272 kb on - strand at 594.349 kb on + strand at 594.349 kb on + strand at 594.350 kb on - strand at 594.414 kb on + strand at 594.414 kb on + strand at 594.414 kb on + strand at 594.415 kb on - strand at 594.416 kb on - strand at 594.420 kb on + strand at 594.420 kb on + strand at 594.420 kb on + strand at 594.420 kb on + strand at 594.420 kb on + strand at 594.421 kb on - strand at 594.421 kb on - strand at 594.422 kb on + strand at 594.422 kb on + strand at 594.422 kb on + strand at 594.422 kb on + strand at 594.422 kb on + strand at 594.422 kb on + strand at 594.423 kb on - strand at 594.429 kb on + strand at 594.447 kb on + strand at 594.448 kb on - strand at 594.572 kb on - strand, within OKGIIK_02520 at 594.572 kb on - strand, within OKGIIK_02520 at 594.572 kb on - strand, within OKGIIK_02520 at 594.572 kb on - strand, within OKGIIK_02520 at 594.572 kb on - strand, within OKGIIK_02520 at 594.572 kb on - strand, within OKGIIK_02520 at 594.667 kb on + strand at 594.667 kb on + strand at 594.667 kb on + strand at 594.667 kb on + strand at 594.667 kb on + strand at 594.667 kb on + strand at 594.667 kb on + strand at 594.668 kb on - strand at 594.668 kb on - strand at 594.668 kb on - strand at 594.668 kb on - strand at 594.668 kb on - strand at 594.747 kb on + strand at 594.747 kb on + strand at 594.747 kb on + strand at 594.756 kb on + strand at 594.757 kb on - strand at 594.757 kb on - strand at 594.796 kb on - strand at 594.885 kb on + strand at 594.885 kb on + strand at 594.885 kb on + strand at 594.886 kb on - strand at 594.887 kb on + strand at 594.888 kb on - strand at 594.898 kb on + strand at 594.955 kb on + strand at 594.956 kb on - strand at 594.956 kb on - strand at 594.956 kb on - strand at 595.015 kb on + strand at 595.015 kb on + strand at 595.015 kb on + strand at 595.016 kb on - strand at 595.076 kb on - strand at 595.106 kb on + strand at 595.106 kb on + strand at 595.106 kb on + strand at 595.151 kb on + strand at 595.151 kb on + strand at 595.152 kb on - strand at 595.152 kb on - strand at 595.152 kb on - strand at 595.166 kb on + strand at 595.178 kb on + strand at 595.184 kb on - strand at 595.198 kb on + strand at 595.198 kb on + strand at 595.199 kb on - strand at 595.203 kb on - strand at 595.203 kb on - strand at 595.220 kb on + strand at 595.221 kb on - strand at 595.256 kb on - strand at 595.256 kb on - strand at 595.256 kb on - strand at 595.318 kb on + strand at 595.318 kb on + strand at 595.318 kb on + strand at 595.318 kb on + strand at 595.319 kb on - strand at 595.319 kb on - strand at 595.359 kb on + strand at 595.360 kb on - strand at 595.462 kb on + strand, within OKGIIK_02525 at 595.463 kb on - strand, within OKGIIK_02525 at 595.463 kb on - strand, within OKGIIK_02525 at 595.463 kb on - strand, within OKGIIK_02525 at 595.535 kb on - strand, within OKGIIK_02525 at 595.554 kb on - strand, within OKGIIK_02525
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4 remove 593,472 + OKGIIK_02515 0.50 -0.3 593,472 + OKGIIK_02515 0.50 +0.6 593,472 + OKGIIK_02515 0.50 -1.0 593,472 + OKGIIK_02515 0.50 -0.4 593,472 + OKGIIK_02515 0.50 -0.4 593,472 + OKGIIK_02515 0.50 -1.7 593,472 + OKGIIK_02515 0.50 -2.4 593,473 - OKGIIK_02515 0.50 -0.4 593,473 - OKGIIK_02515 0.50 -2.0 593,473 - OKGIIK_02515 0.50 -0.5 593,473 - OKGIIK_02515 0.50 -0.7 593,473 - OKGIIK_02515 0.50 -0.5 593,473 - OKGIIK_02515 0.50 -1.2 593,473 - OKGIIK_02515 0.50 -3.6 593,473 - OKGIIK_02515 0.50 -0.6 593,473 - OKGIIK_02515 0.50 +0.6 593,473 - OKGIIK_02515 0.50 +0.7 593,473 - OKGIIK_02515 0.50 -1.1 593,473 - OKGIIK_02515 0.50 -1.2 593,473 - OKGIIK_02515 0.50 -1.4 593,485 + OKGIIK_02515 0.52 -0.5 593,485 + OKGIIK_02515 0.52 -1.6 593,485 + OKGIIK_02515 0.52 -0.7 593,485 + OKGIIK_02515 0.52 -1.0 593,485 + OKGIIK_02515 0.52 -0.7 593,485 + OKGIIK_02515 0.52 -1.0 593,485 + OKGIIK_02515 0.52 -0.7 593,486 - OKGIIK_02515 0.52 -1.6 593,486 - OKGIIK_02515 0.52 +0.9 593,486 - OKGIIK_02515 0.52 -0.7 593,486 - OKGIIK_02515 0.52 -1.7 593,486 - OKGIIK_02515 0.52 -0.7 593,486 - OKGIIK_02515 0.52 -0.4 593,486 - OKGIIK_02515 0.52 -0.7 593,489 - OKGIIK_02515 0.53 -1.0 593,535 - OKGIIK_02515 0.60 -1.6 593,535 - OKGIIK_02515 0.60 +0.3 593,577 + OKGIIK_02515 0.66 -0.4 593,577 + OKGIIK_02515 0.66 -1.6 593,578 - OKGIIK_02515 0.66 -1.0 593,578 - OKGIIK_02515 0.66 -1.4 593,578 - OKGIIK_02515 0.66 -1.9 593,578 - OKGIIK_02515 0.66 -1.6 593,639 + OKGIIK_02515 0.75 -1.7 593,639 + OKGIIK_02515 0.75 -1.6 593,639 + OKGIIK_02515 0.75 -0.7 593,639 + OKGIIK_02515 0.75 -2.9 593,639 + OKGIIK_02515 0.75 -0.2 593,640 - OKGIIK_02515 0.75 -1.7 593,640 - OKGIIK_02515 0.75 -0.4 593,640 - OKGIIK_02515 0.75 +0.9 593,674 + OKGIIK_02515 0.81 -0.4 593,674 + OKGIIK_02515 0.81 +0.0 593,674 + OKGIIK_02515 0.81 -0.7 593,674 + OKGIIK_02515 0.81 -0.7 593,675 - OKGIIK_02515 0.81 -1.2 593,687 + OKGIIK_02515 0.83 -1.6 593,687 + OKGIIK_02515 0.83 -2.2 593,688 - OKGIIK_02515 0.83 -1.4 593,688 - OKGIIK_02515 0.83 -1.0 593,688 - OKGIIK_02515 0.83 -0.9 593,688 - OKGIIK_02515 0.83 -2.3 593,695 + OKGIIK_02515 0.84 -0.7 593,695 + OKGIIK_02515 0.84 -1.9 593,696 - OKGIIK_02515 0.84 -1.1 593,696 - OKGIIK_02515 0.84 -1.2 593,696 - OKGIIK_02515 0.84 -2.7 593,696 - OKGIIK_02515 0.84 +0.6 593,696 - OKGIIK_02515 0.84 -1.4 593,740 + -2.3 593,740 + -1.9 593,740 + -0.7 593,740 + -0.4 593,740 + -0.4 593,740 + -0.7 593,740 + -1.0 593,740 + -0.7 593,741 - +0.0 593,741 - -0.7 593,741 - -1.2 593,771 + -0.7 593,771 + -1.9 593,771 + -0.4 593,772 - -1.2 593,772 - -0.2 593,772 - -0.2 593,772 - -0.7 593,823 - -0.9 593,867 + -0.2 593,869 + -1.1 593,869 + -0.7 593,869 + -0.7 593,869 + -1.7 593,869 + -0.7 593,869 + -1.5 593,869 + -0.4 593,870 - -1.1 593,870 - -3.2 593,870 - -1.0 593,870 - -0.7 593,870 - -2.1 593,904 + -1.5 593,904 + +1.6 593,904 + +0.4 593,904 + -1.7 593,904 + -1.6 593,904 + -2.4 593,904 + -0.3 593,904 + -0.7 593,904 + -0.2 593,904 + -0.7 593,904 + -0.4 593,904 + -1.4 593,904 + -1.0 593,905 - +0.4 593,905 - -2.1 593,905 - -1.9 593,905 - -0.2 593,905 - +0.2 593,905 - -1.0 593,905 - -0.4 593,905 - -1.2 593,905 - -0.3 593,905 - -0.4 593,917 - +1.0 593,917 - -1.2 593,979 + -1.2 593,979 + -2.2 593,980 - +0.2 593,980 - -0.3 594,015 + -0.7 594,015 + -1.2 594,015 + -0.4 594,015 + -1.0 594,015 + +1.6 594,015 + +1.0 594,015 + -1.0 594,015 + -1.4 594,016 - +1.0 594,016 - -0.6 594,016 - -1.4 594,016 - -0.4 594,016 - +0.3 594,016 - -1.7 594,070 + -1.0 594,071 - -0.4 594,071 - -1.2 594,071 - -2.0 594,119 + -1.4 594,119 + -0.4 594,119 + -0.4 594,119 + -0.0 594,119 + -0.2 594,119 + -1.5 594,119 + -1.0 594,119 + -0.5 594,119 + -1.0 594,120 - -2.2 594,120 - -1.2 594,120 - -1.2 594,120 - +0.0 594,131 + -1.4 594,131 + -1.8 594,131 + -1.4 594,131 + +0.9 594,131 + -0.7 594,131 + -1.0 594,132 - -1.0 594,132 - -0.7 594,132 - -0.6 594,132 - -1.1 594,132 - -0.6 594,183 + -1.4 594,183 + -1.0 594,183 + -1.1 594,183 + +0.0 594,183 + -2.3 594,183 + -0.7 594,183 + -1.7 594,183 + +1.4 594,183 + +0.6 594,183 + -0.7 594,183 + -0.1 594,184 - -0.7 594,184 - -0.4 594,184 - -1.2 594,184 - -1.6 594,261 + -0.4 594,261 + -1.0 594,261 + -1.2 594,261 + -1.6 594,262 - -1.6 594,262 - +0.2 594,262 - -0.4 594,262 - -0.7 594,262 - -0.5 594,271 + -1.4 594,271 + -1.6 594,272 - -0.7 594,349 + -0.7 594,349 + -1.0 594,350 - -1.7 594,414 + -1.4 594,414 + -1.0 594,414 + -1.1 594,415 - -0.7 594,416 - -0.6 594,420 + -1.4 594,420 + +0.0 594,420 + -0.7 594,420 + -0.4 594,420 + +0.9 594,421 - -1.3 594,421 - -1.6 594,422 + -0.2 594,422 + -1.4 594,422 + -0.4 594,422 + -0.4 594,422 + -0.9 594,422 + -1.2 594,423 - -1.2 594,429 + +0.9 594,447 + -1.0 594,448 - -0.7 594,572 - OKGIIK_02520 0.51 -2.4 594,572 - OKGIIK_02520 0.51 -0.2 594,572 - OKGIIK_02520 0.51 -2.0 594,572 - OKGIIK_02520 0.51 -0.7 594,572 - OKGIIK_02520 0.51 -1.2 594,572 - OKGIIK_02520 0.51 -1.7 594,667 + -0.7 594,667 + -0.7 594,667 + -1.2 594,667 + +0.0 594,667 + -2.9 594,667 + -1.1 594,667 + -1.2 594,668 - -1.4 594,668 - -2.3 594,668 - -1.0 594,668 - -1.7 594,668 - -1.9 594,747 + +1.3 594,747 + -1.0 594,747 + +0.0 594,756 + -0.4 594,757 - -1.2 594,757 - -0.4 594,796 - +0.3 594,885 + -0.4 594,885 + -1.7 594,885 + +0.3 594,886 - -1.2 594,887 + +1.3 594,888 - +0.3 594,898 + -1.9 594,955 + +1.9 594,956 - -2.4 594,956 - -1.7 594,956 - -0.7 595,015 + -1.4 595,015 + -1.1 595,015 + +0.1 595,016 - -1.0 595,076 - -2.3 595,106 + +0.0 595,106 + -2.0 595,106 + -2.3 595,151 + -1.4 595,151 + +0.6 595,152 - -0.4 595,152 - -0.9 595,152 - -2.1 595,166 + -1.0 595,178 + +1.1 595,184 - -0.4 595,198 + -0.7 595,198 + +0.0 595,199 - -1.0 595,203 - +0.3 595,203 - +0.0 595,220 + -1.4 595,221 - -0.7 595,256 - -0.9 595,256 - -0.3 595,256 - +1.1 595,318 + -0.7 595,318 + +0.9 595,318 + -1.6 595,318 + -0.4 595,319 - -2.3 595,319 - -1.2 595,359 + -1.2 595,360 - -0.3 595,462 + OKGIIK_02525 0.20 -0.4 595,463 - OKGIIK_02525 0.20 +0.3 595,463 - OKGIIK_02525 0.20 -1.2 595,463 - OKGIIK_02525 0.20 -1.1 595,535 - OKGIIK_02525 0.29 -1.9 595,554 - OKGIIK_02525 0.31 -1.0
Or see this region's nucleotide sequence