Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS10645

Experiment: D-Mannose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Mannose 10 mg/mL (C)
30,836	+		HMPREF1078_RS10635	0.19	+0.4
30,837	-		HMPREF1078_RS10635	0.19	+1.3
30,934	+		HMPREF1078_RS10635	0.70	+0.9
30,939	-		HMPREF1078_RS10635	0.73	+0.4
30,988	-				-1.1
31,001	-				+0.7
31,002	+				-0.1
31,003	-				+0.5
31,081	+				-0.8
31,081	+				-0.4
31,101	+				+0.3
31,102	-				+0.7
31,103	+				-0.9
31,103	+				-0.1
31,103	+				-1.2
31,167	+				-0.9
31,178	-				-2.3
31,209	+				-2.1
31,237	+				-0.6
31,266	-				-4.2
31,341	+		HMPREF1078_RS10640	0.16	+1.5
31,360	+		HMPREF1078_RS10640	0.19	-2.4
31,361	-		HMPREF1078_RS10640	0.20	-1.8
31,362	+		HMPREF1078_RS10640	0.20	-0.5
31,362	+		HMPREF1078_RS10640	0.20	+0.5
31,363	-		HMPREF1078_RS10640	0.20	-4.1
31,363	-		HMPREF1078_RS10640	0.20	-1.4
31,363	-		HMPREF1078_RS10640	0.20	-3.0
31,403	+		HMPREF1078_RS10640	0.27	-1.9
31,404	-		HMPREF1078_RS10640	0.27	-3.9
31,404	-		HMPREF1078_RS10640	0.27	-4.0
31,404	-		HMPREF1078_RS10640	0.27	-3.5
31,406	+		HMPREF1078_RS10640	0.28	-0.6
31,407	-		HMPREF1078_RS10640	0.28	-3.4
31,427	-		HMPREF1078_RS10640	0.32	-4.0
31,449	+		HMPREF1078_RS10640	0.35	-0.3
31,450	-		HMPREF1078_RS10640	0.36	-3.4
31,507	-		HMPREF1078_RS10640	0.46	-2.4
31,524	+		HMPREF1078_RS10640	0.49	-1.7
31,531	+		HMPREF1078_RS10640	0.50	+0.2
31,537	+		HMPREF1078_RS10640	0.51	-0.9
31,624	+		HMPREF1078_RS10640	0.67	-0.6
31,651	+		HMPREF1078_RS10640	0.72	-1.7
31,651	+		HMPREF1078_RS10640	0.72	-1.4
31,652	-		HMPREF1078_RS10640	0.72	-1.7
31,653	+		HMPREF1078_RS10640	0.72	+0.9
31,653	+		HMPREF1078_RS10640	0.72	-0.0
31,653	+		HMPREF1078_RS10640	0.72	-1.7
31,653	+		HMPREF1078_RS10640	0.72	-1.5
31,653	+		HMPREF1078_RS10640	0.72	-0.0
31,656	+		HMPREF1078_RS10640	0.73	+0.4
31,656	+		HMPREF1078_RS10640	0.73	+1.3
31,657	-		HMPREF1078_RS10640	0.73	-2.9
31,657	-		HMPREF1078_RS10640	0.73	-2.4
31,657	-		HMPREF1078_RS10640	0.73	-2.4
31,657	-		HMPREF1078_RS10640	0.73	-4.1
31,657	-		HMPREF1078_RS10640	0.73	-4.1
31,657	-		HMPREF1078_RS10640	0.73	-1.0
31,662	-		HMPREF1078_RS10640	0.74	-3.3
31,725	+		HMPREF1078_RS10640	0.85	-1.5
31,725	+		HMPREF1078_RS10640	0.85	-0.7
31,726	-		HMPREF1078_RS10640	0.85	-3.4
31,729	+		HMPREF1078_RS10640	0.86	-1.4
31,730	-		HMPREF1078_RS10640	0.86	-1.5
31,730	-		HMPREF1078_RS10640	0.86	-3.5
31,818	-				-1.3
31,841	+				-5.4
31,931	+				-0.9
31,932	-				-3.4
31,932	-				-5.5
32,000	+		HMPREF1078_RS10645	0.10	-4.9
32,082	+		HMPREF1078_RS10645	0.15	-4.3
32,083	-		HMPREF1078_RS10645	0.15	-4.9
32,083	-		HMPREF1078_RS10645	0.15	-3.3
32,142	+		HMPREF1078_RS10645	0.19	-5.4
32,143	-		HMPREF1078_RS10645	0.19	-4.4
32,194	-		HMPREF1078_RS10645	0.22	-1.9
32,266	-		HMPREF1078_RS10645	0.26	-2.9
32,266	-		HMPREF1078_RS10645	0.26	-1.8
32,266	-		HMPREF1078_RS10645	0.26	-3.7
32,298	-		HMPREF1078_RS10645	0.28	-3.4
32,381	+		HMPREF1078_RS10645	0.33	-4.1
32,381	+		HMPREF1078_RS10645	0.33	-4.7
32,493	+		HMPREF1078_RS10645	0.40	-2.8
32,527	-		HMPREF1078_RS10645	0.42	-5.2
32,590	+		HMPREF1078_RS10645	0.46	-3.9
32,591	-		HMPREF1078_RS10645	0.46	-4.4
32,626	+		HMPREF1078_RS10645	0.48	-3.4
32,655	+		HMPREF1078_RS10645	0.50	-0.9
32,670	-		HMPREF1078_RS10645	0.51	-4.4
32,706	+		HMPREF1078_RS10645	0.53	-1.9
32,727	-		HMPREF1078_RS10645	0.54	-1.9
32,767	+		HMPREF1078_RS10645	0.56	-2.6
32,773	-		HMPREF1078_RS10645	0.57	-3.7
32,818	+		HMPREF1078_RS10645	0.59	-2.9
32,938	+		HMPREF1078_RS10645	0.67	-2.0
33,013	-		HMPREF1078_RS10645	0.71	-3.4
33,050	-		HMPREF1078_RS10645	0.73	-5.3
33,203	+		HMPREF1078_RS10645	0.82	-1.0
33,314	-		HMPREF1078_RS10645	0.89	-0.3
33,410	+				-0.2
33,444	-				-1.6
33,546	+				-4.6
33,628	-		HMPREF1078_RS10650	0.14	-1.0
33,628	-		HMPREF1078_RS10650	0.14	-4.2
33,694	-		HMPREF1078_RS10650	0.20	-4.9
33,737	+		HMPREF1078_RS10650	0.23	-0.5
33,737	+		HMPREF1078_RS10650	0.23	-3.4
33,855	-		HMPREF1078_RS10650	0.34	-3.2
33,875	-		HMPREF1078_RS10650	0.36	-3.1
33,882	+		HMPREF1078_RS10650	0.36	-2.1
33,882	+		HMPREF1078_RS10650	0.36	-3.0
33,883	-		HMPREF1078_RS10650	0.36	-4.3
33,883	-		HMPREF1078_RS10650	0.36	-4.6
33,895	+		HMPREF1078_RS10650	0.38	-4.4
34,035	+		HMPREF1078_RS10650	0.50	-3.1
34,039	+		HMPREF1078_RS10650	0.50	-4.5
34,112	+		HMPREF1078_RS10650	0.57	-3.9
34,113	-		HMPREF1078_RS10650	0.57	-2.7
34,113	-		HMPREF1078_RS10650	0.57	-2.0
34,113	-		HMPREF1078_RS10650	0.57	-1.2
34,156	+		HMPREF1078_RS10650	0.61	-3.8
34,356	+		HMPREF1078_RS10650	0.78	-2.0
34,357	-		HMPREF1078_RS10650	0.79	-2.6
34,357	-		HMPREF1078_RS10650	0.79	-1.7
34,389	+		HMPREF1078_RS10650	0.81	-3.9
34,390	-		HMPREF1078_RS10650	0.82	-3.9