Experiment: D-Mannose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS10615 and HMPREF1078_RS10620 are separated by 134 nucleotides HMPREF1078_RS10620 and HMPREF1078_RS10625 are separated by 552 nucleotides
HMPREF1078_RS10615: HMPREF1078_RS10615 - C1 family peptidase, at 24,939 to 26,156
_RS10615
HMPREF1078_RS10620: HMPREF1078_RS10620 - pyrroline-5-carboxylate reductase, at 26,291 to 27,097
_RS10620
HMPREF1078_RS10625: HMPREF1078_RS10625 - proline dehydrogenase family protein, at 27,650 to 28,828
_RS10625
Position (kb) 26
27
28 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 25.311 kb on + strand, within HMPREF1078_RS10615 at 25.365 kb on - strand, within HMPREF1078_RS10615 at 25.379 kb on + strand, within HMPREF1078_RS10615 at 25.379 kb on + strand, within HMPREF1078_RS10615 at 25.380 kb on - strand, within HMPREF1078_RS10615 at 25.380 kb on - strand, within HMPREF1078_RS10615 at 25.474 kb on + strand, within HMPREF1078_RS10615 at 25.475 kb on - strand, within HMPREF1078_RS10615 at 25.490 kb on + strand, within HMPREF1078_RS10615 at 25.490 kb on + strand, within HMPREF1078_RS10615 at 25.490 kb on + strand, within HMPREF1078_RS10615 at 25.490 kb on + strand, within HMPREF1078_RS10615 at 25.490 kb on + strand, within HMPREF1078_RS10615 at 25.490 kb on + strand, within HMPREF1078_RS10615 at 25.491 kb on - strand, within HMPREF1078_RS10615 at 25.491 kb on - strand, within HMPREF1078_RS10615 at 25.491 kb on - strand, within HMPREF1078_RS10615 at 25.492 kb on + strand, within HMPREF1078_RS10615 at 25.492 kb on + strand, within HMPREF1078_RS10615 at 25.493 kb on - strand, within HMPREF1078_RS10615 at 25.493 kb on - strand, within HMPREF1078_RS10615 at 25.510 kb on + strand, within HMPREF1078_RS10615 at 25.510 kb on + strand, within HMPREF1078_RS10615 at 25.511 kb on - strand, within HMPREF1078_RS10615 at 25.511 kb on - strand, within HMPREF1078_RS10615 at 25.539 kb on - strand, within HMPREF1078_RS10615 at 25.539 kb on - strand, within HMPREF1078_RS10615 at 25.539 kb on - strand, within HMPREF1078_RS10615 at 25.539 kb on - strand, within HMPREF1078_RS10615 at 25.541 kb on - strand, within HMPREF1078_RS10615 at 25.541 kb on - strand, within HMPREF1078_RS10615 at 25.559 kb on - strand, within HMPREF1078_RS10615 at 25.566 kb on - strand, within HMPREF1078_RS10615 at 25.571 kb on + strand, within HMPREF1078_RS10615 at 25.577 kb on + strand, within HMPREF1078_RS10615 at 25.670 kb on + strand, within HMPREF1078_RS10615 at 25.731 kb on - strand, within HMPREF1078_RS10615 at 25.745 kb on + strand, within HMPREF1078_RS10615 at 25.746 kb on - strand, within HMPREF1078_RS10615 at 25.753 kb on + strand, within HMPREF1078_RS10615 at 25.753 kb on + strand, within HMPREF1078_RS10615 at 25.754 kb on - strand, within HMPREF1078_RS10615 at 25.754 kb on - strand, within HMPREF1078_RS10615 at 25.754 kb on - strand, within HMPREF1078_RS10615 at 25.810 kb on + strand, within HMPREF1078_RS10615 at 25.811 kb on - strand, within HMPREF1078_RS10615 at 25.822 kb on + strand, within HMPREF1078_RS10615 at 25.822 kb on + strand, within HMPREF1078_RS10615 at 25.822 kb on + strand, within HMPREF1078_RS10615 at 25.862 kb on + strand, within HMPREF1078_RS10615 at 25.863 kb on - strand, within HMPREF1078_RS10615 at 25.891 kb on + strand, within HMPREF1078_RS10615 at 25.891 kb on + strand, within HMPREF1078_RS10615 at 25.892 kb on - strand, within HMPREF1078_RS10615 at 25.895 kb on + strand, within HMPREF1078_RS10615 at 25.895 kb on + strand, within HMPREF1078_RS10615 at 25.895 kb on + strand, within HMPREF1078_RS10615 at 25.895 kb on + strand, within HMPREF1078_RS10615 at 25.896 kb on - strand, within HMPREF1078_RS10615 at 25.896 kb on - strand, within HMPREF1078_RS10615 at 25.896 kb on - strand, within HMPREF1078_RS10615 at 25.981 kb on + strand, within HMPREF1078_RS10615 at 26.129 kb on + strand at 26.129 kb on + strand at 26.130 kb on - strand at 26.130 kb on - strand at 26.141 kb on + strand at 26.158 kb on + strand at 26.158 kb on + strand at 26.159 kb on - strand at 26.165 kb on - strand at 26.168 kb on + strand at 26.168 kb on + strand at 26.168 kb on + strand at 26.168 kb on + strand at 26.168 kb on + strand at 26.169 kb on - strand at 26.170 kb on + strand at 26.173 kb on + strand at 26.174 kb on - strand at 26.178 kb on + strand at 26.179 kb on - strand at 26.181 kb on + strand at 26.181 kb on + strand at 26.182 kb on - strand at 26.182 kb on - strand at 26.211 kb on + strand at 26.252 kb on + strand at 26.267 kb on + strand at 26.267 kb on + strand at 26.267 kb on + strand at 26.270 kb on + strand at 26.270 kb on + strand at 26.274 kb on + strand at 26.275 kb on - strand at 26.275 kb on - strand at 26.276 kb on + strand at 26.276 kb on + strand at 26.279 kb on + strand at 26.282 kb on - strand at 26.346 kb on + strand at 26.359 kb on + strand at 26.359 kb on + strand at 26.359 kb on + strand at 26.360 kb on - strand at 26.360 kb on - strand at 26.402 kb on - strand, within HMPREF1078_RS10620 at 26.402 kb on - strand, within HMPREF1078_RS10620 at 26.425 kb on + strand, within HMPREF1078_RS10620 at 26.460 kb on + strand, within HMPREF1078_RS10620 at 26.461 kb on - strand, within HMPREF1078_RS10620 at 26.461 kb on - strand, within HMPREF1078_RS10620 at 26.461 kb on - strand, within HMPREF1078_RS10620 at 26.461 kb on - strand, within HMPREF1078_RS10620 at 26.514 kb on + strand, within HMPREF1078_RS10620 at 26.524 kb on + strand, within HMPREF1078_RS10620 at 26.566 kb on - strand, within HMPREF1078_RS10620 at 26.612 kb on + strand, within HMPREF1078_RS10620 at 26.698 kb on + strand, within HMPREF1078_RS10620 at 26.705 kb on - strand, within HMPREF1078_RS10620 at 26.751 kb on + strand, within HMPREF1078_RS10620 at 26.752 kb on - strand, within HMPREF1078_RS10620 at 26.761 kb on + strand, within HMPREF1078_RS10620 at 26.762 kb on - strand, within HMPREF1078_RS10620 at 26.858 kb on + strand, within HMPREF1078_RS10620 at 27.016 kb on + strand, within HMPREF1078_RS10620 at 27.128 kb on + strand at 27.146 kb on - strand at 27.146 kb on - strand at 27.158 kb on - strand at 27.158 kb on - strand at 27.158 kb on - strand at 27.178 kb on - strand at 27.207 kb on + strand at 27.363 kb on - strand at 27.536 kb on - strand at 27.565 kb on - strand at 27.627 kb on + strand at 27.759 kb on + strand at 27.795 kb on + strand, within HMPREF1078_RS10625 at 27.795 kb on + strand, within HMPREF1078_RS10625 at 27.796 kb on - strand, within HMPREF1078_RS10625 at 27.804 kb on - strand, within HMPREF1078_RS10625 at 27.808 kb on + strand, within HMPREF1078_RS10625 at 27.810 kb on + strand, within HMPREF1078_RS10625 at 27.838 kb on + strand, within HMPREF1078_RS10625 at 27.839 kb on - strand, within HMPREF1078_RS10625 at 27.850 kb on + strand, within HMPREF1078_RS10625 at 27.851 kb on - strand, within HMPREF1078_RS10625 at 27.851 kb on - strand, within HMPREF1078_RS10625 at 27.894 kb on - strand, within HMPREF1078_RS10625 at 27.908 kb on + strand, within HMPREF1078_RS10625 at 28.036 kb on + strand, within HMPREF1078_RS10625 at 28.092 kb on + strand, within HMPREF1078_RS10625 at 28.092 kb on + strand, within HMPREF1078_RS10625 at 28.093 kb on - strand, within HMPREF1078_RS10625
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C) remove 25,311 + HMPREF1078_RS10615 0.31 +0.5 25,365 - HMPREF1078_RS10615 0.35 +0.3 25,379 + HMPREF1078_RS10615 0.36 -0.9 25,379 + HMPREF1078_RS10615 0.36 -0.2 25,380 - HMPREF1078_RS10615 0.36 +1.4 25,380 - HMPREF1078_RS10615 0.36 +1.1 25,474 + HMPREF1078_RS10615 0.44 +0.6 25,475 - HMPREF1078_RS10615 0.44 -0.0 25,490 + HMPREF1078_RS10615 0.45 +0.9 25,490 + HMPREF1078_RS10615 0.45 +0.3 25,490 + HMPREF1078_RS10615 0.45 +0.2 25,490 + HMPREF1078_RS10615 0.45 +0.7 25,490 + HMPREF1078_RS10615 0.45 +0.5 25,490 + HMPREF1078_RS10615 0.45 +2.2 25,491 - HMPREF1078_RS10615 0.45 +1.0 25,491 - HMPREF1078_RS10615 0.45 +0.1 25,491 - HMPREF1078_RS10615 0.45 +1.0 25,492 + HMPREF1078_RS10615 0.45 -0.1 25,492 + HMPREF1078_RS10615 0.45 +0.8 25,493 - HMPREF1078_RS10615 0.45 +0.5 25,493 - HMPREF1078_RS10615 0.45 +0.1 25,510 + HMPREF1078_RS10615 0.47 -1.2 25,510 + HMPREF1078_RS10615 0.47 +0.2 25,511 - HMPREF1078_RS10615 0.47 +0.7 25,511 - HMPREF1078_RS10615 0.47 +1.1 25,539 - HMPREF1078_RS10615 0.49 +1.2 25,539 - HMPREF1078_RS10615 0.49 +0.4 25,539 - HMPREF1078_RS10615 0.49 +1.5 25,539 - HMPREF1078_RS10615 0.49 +0.4 25,541 - HMPREF1078_RS10615 0.49 +0.5 25,541 - HMPREF1078_RS10615 0.49 -0.5 25,559 - HMPREF1078_RS10615 0.51 -0.9 25,566 - HMPREF1078_RS10615 0.51 +1.2 25,571 + HMPREF1078_RS10615 0.52 +0.5 25,577 + HMPREF1078_RS10615 0.52 +1.2 25,670 + HMPREF1078_RS10615 0.60 +0.8 25,731 - HMPREF1078_RS10615 0.65 -0.3 25,745 + HMPREF1078_RS10615 0.66 +0.6 25,746 - HMPREF1078_RS10615 0.66 +0.7 25,753 + HMPREF1078_RS10615 0.67 +0.1 25,753 + HMPREF1078_RS10615 0.67 +1.1 25,754 - HMPREF1078_RS10615 0.67 +1.0 25,754 - HMPREF1078_RS10615 0.67 +0.1 25,754 - HMPREF1078_RS10615 0.67 +2.0 25,810 + HMPREF1078_RS10615 0.72 +0.9 25,811 - HMPREF1078_RS10615 0.72 +0.5 25,822 + HMPREF1078_RS10615 0.72 +0.2 25,822 + HMPREF1078_RS10615 0.72 +0.8 25,822 + HMPREF1078_RS10615 0.72 -0.0 25,862 + HMPREF1078_RS10615 0.76 +1.1 25,863 - HMPREF1078_RS10615 0.76 +0.6 25,891 + HMPREF1078_RS10615 0.78 +0.6 25,891 + HMPREF1078_RS10615 0.78 +0.7 25,892 - HMPREF1078_RS10615 0.78 +0.2 25,895 + HMPREF1078_RS10615 0.78 +0.0 25,895 + HMPREF1078_RS10615 0.78 +0.6 25,895 + HMPREF1078_RS10615 0.78 -0.1 25,895 + HMPREF1078_RS10615 0.78 -2.4 25,896 - HMPREF1078_RS10615 0.79 +0.7 25,896 - HMPREF1078_RS10615 0.79 +1.0 25,896 - HMPREF1078_RS10615 0.79 +1.0 25,981 + HMPREF1078_RS10615 0.86 +0.4 26,129 + +1.1 26,129 + +0.2 26,130 - +0.8 26,130 - +1.0 26,141 + +1.2 26,158 + +0.6 26,158 + +1.4 26,159 - +0.0 26,165 - +0.3 26,168 + +0.2 26,168 + -1.4 26,168 + +0.5 26,168 + +0.2 26,168 + +0.5 26,169 - -0.6 26,170 + +0.8 26,173 + +0.6 26,174 - +0.1 26,178 + +0.4 26,179 - +0.4 26,181 + +1.2 26,181 + -1.3 26,182 - +0.9 26,182 - +0.4 26,211 + -0.0 26,252 + -0.7 26,267 + +0.6 26,267 + +0.3 26,267 + +1.2 26,270 + -0.3 26,270 + -0.6 26,274 + +0.2 26,275 - -2.7 26,275 - -1.9 26,276 + -0.6 26,276 + -0.2 26,279 + -0.5 26,282 - -2.9 26,346 + +0.1 26,359 + -3.5 26,359 + -3.0 26,359 + -3.0 26,360 - -3.8 26,360 - -2.0 26,402 - HMPREF1078_RS10620 0.14 -3.6 26,402 - HMPREF1078_RS10620 0.14 -2.2 26,425 + HMPREF1078_RS10620 0.17 -3.4 26,460 + HMPREF1078_RS10620 0.21 -2.7 26,461 - HMPREF1078_RS10620 0.21 -3.0 26,461 - HMPREF1078_RS10620 0.21 -1.8 26,461 - HMPREF1078_RS10620 0.21 -1.5 26,461 - HMPREF1078_RS10620 0.21 -4.4 26,514 + HMPREF1078_RS10620 0.28 -3.3 26,524 + HMPREF1078_RS10620 0.29 -3.9 26,566 - HMPREF1078_RS10620 0.34 -1.8 26,612 + HMPREF1078_RS10620 0.40 -4.7 26,698 + HMPREF1078_RS10620 0.50 -3.7 26,705 - HMPREF1078_RS10620 0.51 -4.5 26,751 + HMPREF1078_RS10620 0.57 -4.1 26,752 - HMPREF1078_RS10620 0.57 -2.0 26,761 + HMPREF1078_RS10620 0.58 -2.7 26,762 - HMPREF1078_RS10620 0.58 -3.7 26,858 + HMPREF1078_RS10620 0.70 -2.2 27,016 + HMPREF1078_RS10620 0.90 -1.1 27,128 + +2.0 27,146 - -0.7 27,146 - +0.9 27,158 - +3.9 27,158 - -0.2 27,158 - +0.1 27,178 - +0.9 27,207 + -0.1 27,363 - -1.0 27,536 - -0.7 27,565 - -0.6 27,627 + +2.3 27,759 + +0.1 27,795 + HMPREF1078_RS10625 0.12 +0.1 27,795 + HMPREF1078_RS10625 0.12 +0.9 27,796 - HMPREF1078_RS10625 0.12 -0.7 27,804 - HMPREF1078_RS10625 0.13 -0.9 27,808 + HMPREF1078_RS10625 0.13 -1.9 27,810 + HMPREF1078_RS10625 0.14 -1.9 27,838 + HMPREF1078_RS10625 0.16 +0.8 27,839 - HMPREF1078_RS10625 0.16 +0.2 27,850 + HMPREF1078_RS10625 0.17 +0.1 27,851 - HMPREF1078_RS10625 0.17 -0.3 27,851 - HMPREF1078_RS10625 0.17 -2.2 27,894 - HMPREF1078_RS10625 0.21 -1.0 27,908 + HMPREF1078_RS10625 0.22 +0.9 28,036 + HMPREF1078_RS10625 0.33 -1.0 28,092 + HMPREF1078_RS10625 0.37 -0.6 28,092 + HMPREF1078_RS10625 0.37 -1.2 28,093 - HMPREF1078_RS10625 0.38 -0.2
Or see this region's nucleotide sequence