Experiment: D-Mannose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS00135 and HMPREF1078_RS00140 are separated by 30 nucleotides HMPREF1078_RS00140 and HMPREF1078_RS00145 are separated by 29 nucleotides HMPREF1078_RS00145 and HMPREF1078_RS00150 are separated by 61 nucleotides
HMPREF1078_RS00135: HMPREF1078_RS00135 - anthranilate phosphoribosyltransferase, at 30,665 to 31,669
_RS00135
HMPREF1078_RS00140: HMPREF1078_RS00140 - aminodeoxychorismate/anthranilate synthase component II, at 31,700 to 32,269
_RS00140
HMPREF1078_RS00145: HMPREF1078_RS00145 - anthranilate synthase component I family protein, at 32,299 to 33,702
_RS00145
HMPREF1078_RS00150: HMPREF1078_RS00150 - tryptophan synthase subunit beta, at 33,764 to 34,957
_RS00150
Position (kb) 32
33
34 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 31.305 kb on - strand, within HMPREF1078_RS00135 at 31.360 kb on + strand, within HMPREF1078_RS00135 at 31.360 kb on + strand, within HMPREF1078_RS00135 at 31.403 kb on - strand, within HMPREF1078_RS00135 at 31.411 kb on + strand, within HMPREF1078_RS00135 at 31.529 kb on - strand, within HMPREF1078_RS00135 at 31.529 kb on - strand, within HMPREF1078_RS00135 at 31.531 kb on + strand, within HMPREF1078_RS00135 at 31.531 kb on + strand, within HMPREF1078_RS00135 at 31.532 kb on - strand, within HMPREF1078_RS00135 at 31.544 kb on + strand, within HMPREF1078_RS00135 at 31.576 kb on + strand at 31.577 kb on - strand at 31.594 kb on + strand at 31.632 kb on + strand at 31.633 kb on - strand at 31.647 kb on - strand at 31.651 kb on + strand at 31.652 kb on - strand at 31.652 kb on - strand at 31.652 kb on - strand at 31.652 kb on - strand at 31.652 kb on - strand at 31.652 kb on - strand at 31.653 kb on + strand at 31.654 kb on - strand at 31.654 kb on - strand at 31.655 kb on + strand at 31.655 kb on + strand at 31.655 kb on + strand at 31.655 kb on + strand at 31.655 kb on + strand at 31.655 kb on + strand at 31.655 kb on + strand at 31.655 kb on + strand at 31.655 kb on + strand at 31.655 kb on + strand at 31.655 kb on + strand at 31.655 kb on + strand at 31.656 kb on - strand at 31.656 kb on - strand at 31.656 kb on - strand at 31.656 kb on - strand at 31.656 kb on - strand at 31.656 kb on - strand at 31.656 kb on - strand at 31.656 kb on - strand at 31.656 kb on - strand at 31.658 kb on + strand at 31.659 kb on - strand at 31.659 kb on - strand at 31.789 kb on - strand, within HMPREF1078_RS00140 at 31.924 kb on + strand, within HMPREF1078_RS00140 at 31.952 kb on + strand, within HMPREF1078_RS00140 at 31.953 kb on - strand, within HMPREF1078_RS00140 at 31.953 kb on - strand, within HMPREF1078_RS00140 at 31.953 kb on - strand, within HMPREF1078_RS00140 at 31.953 kb on - strand, within HMPREF1078_RS00140 at 31.976 kb on + strand, within HMPREF1078_RS00140 at 31.976 kb on + strand, within HMPREF1078_RS00140 at 31.977 kb on - strand, within HMPREF1078_RS00140 at 31.977 kb on - strand, within HMPREF1078_RS00140 at 31.977 kb on - strand, within HMPREF1078_RS00140 at 31.977 kb on - strand, within HMPREF1078_RS00140 at 31.993 kb on + strand, within HMPREF1078_RS00140 at 32.184 kb on - strand, within HMPREF1078_RS00140 at 32.213 kb on + strand at 32.213 kb on + strand at 32.213 kb on + strand at 32.213 kb on + strand at 32.213 kb on + strand at 32.215 kb on + strand at 32.216 kb on - strand at 32.216 kb on - strand at 32.216 kb on - strand at 32.244 kb on + strand at 32.245 kb on - strand at 32.258 kb on + strand at 32.262 kb on - strand at 32.417 kb on + strand at 32.417 kb on + strand at 32.421 kb on - strand at 32.449 kb on - strand, within HMPREF1078_RS00145 at 32.449 kb on - strand, within HMPREF1078_RS00145 at 32.533 kb on + strand, within HMPREF1078_RS00145 at 32.560 kb on + strand, within HMPREF1078_RS00145 at 32.561 kb on - strand, within HMPREF1078_RS00145 at 32.561 kb on - strand, within HMPREF1078_RS00145 at 32.561 kb on - strand, within HMPREF1078_RS00145 at 32.598 kb on + strand, within HMPREF1078_RS00145 at 32.598 kb on + strand, within HMPREF1078_RS00145 at 32.598 kb on + strand, within HMPREF1078_RS00145 at 32.599 kb on - strand, within HMPREF1078_RS00145 at 32.599 kb on - strand, within HMPREF1078_RS00145 at 32.603 kb on - strand, within HMPREF1078_RS00145 at 32.603 kb on - strand, within HMPREF1078_RS00145 at 32.603 kb on - strand, within HMPREF1078_RS00145 at 32.604 kb on + strand, within HMPREF1078_RS00145 at 32.605 kb on - strand, within HMPREF1078_RS00145 at 32.606 kb on + strand, within HMPREF1078_RS00145 at 32.606 kb on + strand, within HMPREF1078_RS00145 at 32.606 kb on + strand, within HMPREF1078_RS00145 at 32.607 kb on - strand, within HMPREF1078_RS00145 at 32.607 kb on - strand, within HMPREF1078_RS00145 at 32.678 kb on + strand, within HMPREF1078_RS00145 at 32.679 kb on - strand, within HMPREF1078_RS00145 at 32.679 kb on - strand, within HMPREF1078_RS00145 at 32.681 kb on + strand, within HMPREF1078_RS00145 at 32.710 kb on + strand, within HMPREF1078_RS00145 at 32.711 kb on - strand, within HMPREF1078_RS00145 at 33.095 kb on + strand, within HMPREF1078_RS00145 at 33.145 kb on - strand, within HMPREF1078_RS00145 at 33.146 kb on + strand, within HMPREF1078_RS00145 at 33.155 kb on + strand, within HMPREF1078_RS00145 at 33.155 kb on + strand, within HMPREF1078_RS00145 at 33.156 kb on - strand, within HMPREF1078_RS00145 at 33.170 kb on - strand, within HMPREF1078_RS00145 at 33.182 kb on - strand, within HMPREF1078_RS00145 at 33.182 kb on - strand, within HMPREF1078_RS00145 at 33.262 kb on + strand, within HMPREF1078_RS00145 at 33.263 kb on - strand, within HMPREF1078_RS00145 at 33.266 kb on + strand, within HMPREF1078_RS00145 at 33.266 kb on + strand, within HMPREF1078_RS00145 at 33.267 kb on - strand, within HMPREF1078_RS00145 at 33.267 kb on - strand, within HMPREF1078_RS00145 at 33.267 kb on - strand, within HMPREF1078_RS00145 at 33.267 kb on - strand, within HMPREF1078_RS00145 at 33.267 kb on - strand, within HMPREF1078_RS00145 at 33.270 kb on + strand, within HMPREF1078_RS00145 at 33.270 kb on + strand, within HMPREF1078_RS00145 at 33.270 kb on + strand, within HMPREF1078_RS00145 at 33.271 kb on - strand, within HMPREF1078_RS00145 at 33.271 kb on - strand, within HMPREF1078_RS00145 at 33.271 kb on - strand, within HMPREF1078_RS00145 at 33.271 kb on - strand, within HMPREF1078_RS00145 at 33.271 kb on - strand, within HMPREF1078_RS00145 at 33.271 kb on - strand, within HMPREF1078_RS00145 at 33.271 kb on - strand, within HMPREF1078_RS00145 at 33.272 kb on + strand, within HMPREF1078_RS00145 at 33.274 kb on + strand, within HMPREF1078_RS00145 at 33.275 kb on - strand, within HMPREF1078_RS00145 at 33.278 kb on - strand, within HMPREF1078_RS00145 at 33.278 kb on - strand, within HMPREF1078_RS00145 at 33.278 kb on - strand, within HMPREF1078_RS00145 at 33.278 kb on - strand, within HMPREF1078_RS00145 at 33.278 kb on - strand, within HMPREF1078_RS00145 at 33.278 kb on - strand, within HMPREF1078_RS00145 at 33.281 kb on + strand, within HMPREF1078_RS00145 at 33.281 kb on + strand, within HMPREF1078_RS00145 at 33.282 kb on - strand, within HMPREF1078_RS00145 at 33.282 kb on - strand, within HMPREF1078_RS00145 at 33.367 kb on - strand, within HMPREF1078_RS00145 at 33.554 kb on + strand, within HMPREF1078_RS00145 at 33.614 kb on + strand at 33.626 kb on - strand at 33.639 kb on + strand at 33.640 kb on - strand at 33.651 kb on + strand at 33.651 kb on + strand at 33.652 kb on - strand at 33.693 kb on + strand at 33.693 kb on + strand at 33.693 kb on + strand at 33.693 kb on + strand at 33.694 kb on - strand at 33.694 kb on - strand at 33.696 kb on - strand at 33.704 kb on - strand at 33.704 kb on - strand at 33.725 kb on + strand at 33.736 kb on + strand at 33.738 kb on - strand at 33.785 kb on - strand at 33.790 kb on + strand at 33.790 kb on + strand at 33.790 kb on + strand at 33.791 kb on - strand at 33.793 kb on + strand at 33.793 kb on + strand at 33.794 kb on - strand at 33.794 kb on - strand at 33.795 kb on + strand at 33.795 kb on + strand at 33.796 kb on - strand at 33.796 kb on - strand at 33.796 kb on - strand at 33.796 kb on - strand at 33.796 kb on - strand at 33.796 kb on - strand at 33.811 kb on + strand at 33.864 kb on - strand at 33.868 kb on + strand at 33.882 kb on - strand at 33.882 kb on - strand at 33.947 kb on + strand, within HMPREF1078_RS00150 at 34.086 kb on - strand, within HMPREF1078_RS00150 at 34.091 kb on + strand, within HMPREF1078_RS00150 at 34.092 kb on - strand, within HMPREF1078_RS00150 at 34.109 kb on + strand, within HMPREF1078_RS00150 at 34.109 kb on + strand, within HMPREF1078_RS00150 at 34.110 kb on - strand, within HMPREF1078_RS00150 at 34.110 kb on - strand, within HMPREF1078_RS00150 at 34.110 kb on - strand, within HMPREF1078_RS00150 at 34.110 kb on - strand, within HMPREF1078_RS00150 at 34.110 kb on - strand, within HMPREF1078_RS00150 at 34.115 kb on - strand, within HMPREF1078_RS00150 at 34.253 kb on + strand, within HMPREF1078_RS00150 at 34.254 kb on - strand, within HMPREF1078_RS00150 at 34.254 kb on - strand, within HMPREF1078_RS00150 at 34.360 kb on - strand, within HMPREF1078_RS00150 at 34.392 kb on + strand, within HMPREF1078_RS00150 at 34.392 kb on + strand, within HMPREF1078_RS00150 at 34.392 kb on + strand, within HMPREF1078_RS00150 at 34.392 kb on + strand, within HMPREF1078_RS00150 at 34.392 kb on + strand, within HMPREF1078_RS00150 at 34.392 kb on + strand, within HMPREF1078_RS00150 at 34.392 kb on + strand, within HMPREF1078_RS00150 at 34.393 kb on - strand, within HMPREF1078_RS00150 at 34.393 kb on - strand, within HMPREF1078_RS00150 at 34.393 kb on - strand, within HMPREF1078_RS00150 at 34.395 kb on + strand, within HMPREF1078_RS00150 at 34.395 kb on + strand, within HMPREF1078_RS00150 at 34.396 kb on - strand, within HMPREF1078_RS00150 at 34.396 kb on - strand, within HMPREF1078_RS00150 at 34.396 kb on - strand, within HMPREF1078_RS00150 at 34.473 kb on - strand, within HMPREF1078_RS00150 at 34.551 kb on + strand, within HMPREF1078_RS00150 at 34.551 kb on + strand, within HMPREF1078_RS00150 at 34.551 kb on + strand, within HMPREF1078_RS00150 at 34.559 kb on - strand, within HMPREF1078_RS00150 at 34.559 kb on - strand, within HMPREF1078_RS00150 at 34.568 kb on - strand, within HMPREF1078_RS00150 at 34.633 kb on + strand, within HMPREF1078_RS00150 at 34.633 kb on + strand, within HMPREF1078_RS00150 at 34.690 kb on + strand, within HMPREF1078_RS00150
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C) remove 31,305 - HMPREF1078_RS00135 0.64 -4.6 31,360 + HMPREF1078_RS00135 0.69 -3.1 31,360 + HMPREF1078_RS00135 0.69 -2.8 31,403 - HMPREF1078_RS00135 0.73 -1.8 31,411 + HMPREF1078_RS00135 0.74 -2.2 31,529 - HMPREF1078_RS00135 0.86 -1.0 31,529 - HMPREF1078_RS00135 0.86 -3.2 31,531 + HMPREF1078_RS00135 0.86 -4.2 31,531 + HMPREF1078_RS00135 0.86 -3.9 31,532 - HMPREF1078_RS00135 0.86 -2.9 31,544 + HMPREF1078_RS00135 0.87 -3.1 31,576 + -2.5 31,577 - -2.2 31,594 + -3.7 31,632 + -2.3 31,633 - -2.6 31,647 - +0.3 31,651 + -2.3 31,652 - -3.8 31,652 - -3.8 31,652 - -5.0 31,652 - -4.4 31,652 - -3.0 31,652 - -3.2 31,653 + -3.2 31,654 - -2.1 31,654 - -2.4 31,655 + -4.0 31,655 + -2.7 31,655 + -3.5 31,655 + -3.0 31,655 + +0.4 31,655 + -4.1 31,655 + -1.9 31,655 + -2.9 31,655 + -3.8 31,655 + -4.7 31,655 + -4.4 31,655 + -2.7 31,656 - -2.4 31,656 - -1.4 31,656 - +0.0 31,656 - -1.8 31,656 - -4.7 31,656 - -3.1 31,656 - -1.4 31,656 - -1.3 31,656 - -2.4 31,658 + -4.0 31,659 - -2.9 31,659 - -4.6 31,789 - HMPREF1078_RS00140 0.16 +0.2 31,924 + HMPREF1078_RS00140 0.39 -1.7 31,952 + HMPREF1078_RS00140 0.44 -3.5 31,953 - HMPREF1078_RS00140 0.44 -0.7 31,953 - HMPREF1078_RS00140 0.44 +0.0 31,953 - HMPREF1078_RS00140 0.44 -1.3 31,953 - HMPREF1078_RS00140 0.44 -0.2 31,976 + HMPREF1078_RS00140 0.48 -3.1 31,976 + HMPREF1078_RS00140 0.48 -2.0 31,977 - HMPREF1078_RS00140 0.49 -2.1 31,977 - HMPREF1078_RS00140 0.49 -1.3 31,977 - HMPREF1078_RS00140 0.49 -0.4 31,977 - HMPREF1078_RS00140 0.49 +0.1 31,993 + HMPREF1078_RS00140 0.51 -3.1 32,184 - HMPREF1078_RS00140 0.85 -2.1 32,213 + -3.0 32,213 + -1.7 32,213 + -0.7 32,213 + -3.4 32,213 + -1.9 32,215 + -4.3 32,216 - +1.5 32,216 - -2.2 32,216 - -1.9 32,244 + +0.8 32,245 - -2.9 32,258 + -3.4 32,262 - -1.2 32,417 + -1.6 32,417 + -3.5 32,421 - -0.2 32,449 - HMPREF1078_RS00145 0.11 -4.2 32,449 - HMPREF1078_RS00145 0.11 -4.3 32,533 + HMPREF1078_RS00145 0.17 -2.8 32,560 + HMPREF1078_RS00145 0.19 -3.2 32,561 - HMPREF1078_RS00145 0.19 -2.3 32,561 - HMPREF1078_RS00145 0.19 -4.2 32,561 - HMPREF1078_RS00145 0.19 -4.3 32,598 + HMPREF1078_RS00145 0.21 -3.4 32,598 + HMPREF1078_RS00145 0.21 -2.6 32,598 + HMPREF1078_RS00145 0.21 -2.0 32,599 - HMPREF1078_RS00145 0.21 -3.1 32,599 - HMPREF1078_RS00145 0.21 +1.3 32,603 - HMPREF1078_RS00145 0.22 -2.5 32,603 - HMPREF1078_RS00145 0.22 -2.6 32,603 - HMPREF1078_RS00145 0.22 -2.9 32,604 + HMPREF1078_RS00145 0.22 -3.2 32,605 - HMPREF1078_RS00145 0.22 -2.7 32,606 + HMPREF1078_RS00145 0.22 -1.1 32,606 + HMPREF1078_RS00145 0.22 +0.0 32,606 + HMPREF1078_RS00145 0.22 -3.2 32,607 - HMPREF1078_RS00145 0.22 -2.8 32,607 - HMPREF1078_RS00145 0.22 -2.5 32,678 + HMPREF1078_RS00145 0.27 -3.2 32,679 - HMPREF1078_RS00145 0.27 -2.7 32,679 - HMPREF1078_RS00145 0.27 -4.1 32,681 + HMPREF1078_RS00145 0.27 -4.0 32,710 + HMPREF1078_RS00145 0.29 -0.8 32,711 - HMPREF1078_RS00145 0.29 -4.1 33,095 + HMPREF1078_RS00145 0.57 -3.6 33,145 - HMPREF1078_RS00145 0.60 -3.8 33,146 + HMPREF1078_RS00145 0.60 -4.7 33,155 + HMPREF1078_RS00145 0.61 -2.9 33,155 + HMPREF1078_RS00145 0.61 -3.0 33,156 - HMPREF1078_RS00145 0.61 -2.1 33,170 - HMPREF1078_RS00145 0.62 -4.5 33,182 - HMPREF1078_RS00145 0.63 -4.0 33,182 - HMPREF1078_RS00145 0.63 -3.1 33,262 + HMPREF1078_RS00145 0.69 -3.0 33,263 - HMPREF1078_RS00145 0.69 -3.5 33,266 + HMPREF1078_RS00145 0.69 -1.2 33,266 + HMPREF1078_RS00145 0.69 -4.6 33,267 - HMPREF1078_RS00145 0.69 -0.4 33,267 - HMPREF1078_RS00145 0.69 -4.0 33,267 - HMPREF1078_RS00145 0.69 -2.6 33,267 - HMPREF1078_RS00145 0.69 -2.9 33,267 - HMPREF1078_RS00145 0.69 -4.1 33,270 + HMPREF1078_RS00145 0.69 -1.7 33,270 + HMPREF1078_RS00145 0.69 -2.2 33,270 + HMPREF1078_RS00145 0.69 -3.8 33,271 - HMPREF1078_RS00145 0.69 -1.8 33,271 - HMPREF1078_RS00145 0.69 -3.0 33,271 - HMPREF1078_RS00145 0.69 -1.6 33,271 - HMPREF1078_RS00145 0.69 -2.1 33,271 - HMPREF1078_RS00145 0.69 -3.3 33,271 - HMPREF1078_RS00145 0.69 -3.6 33,271 - HMPREF1078_RS00145 0.69 -2.0 33,272 + HMPREF1078_RS00145 0.69 -1.7 33,274 + HMPREF1078_RS00145 0.69 -0.5 33,275 - HMPREF1078_RS00145 0.70 -1.4 33,278 - HMPREF1078_RS00145 0.70 -2.5 33,278 - HMPREF1078_RS00145 0.70 -0.7 33,278 - HMPREF1078_RS00145 0.70 -3.4 33,278 - HMPREF1078_RS00145 0.70 -1.5 33,278 - HMPREF1078_RS00145 0.70 -0.8 33,278 - HMPREF1078_RS00145 0.70 -1.6 33,281 + HMPREF1078_RS00145 0.70 -2.7 33,281 + HMPREF1078_RS00145 0.70 -2.2 33,282 - HMPREF1078_RS00145 0.70 -2.5 33,282 - HMPREF1078_RS00145 0.70 -1.6 33,367 - HMPREF1078_RS00145 0.76 -2.2 33,554 + HMPREF1078_RS00145 0.89 -2.2 33,614 + -3.7 33,626 - +0.0 33,639 + -3.1 33,640 - -3.2 33,651 + -1.5 33,651 + -4.0 33,652 - -3.6 33,693 + -2.9 33,693 + -3.8 33,693 + -4.8 33,693 + -3.2 33,694 - -1.2 33,694 - -1.0 33,696 - -3.6 33,704 - -3.7 33,704 - -2.2 33,725 + -2.7 33,736 + -2.9 33,738 - -0.2 33,785 - +1.4 33,790 + -3.8 33,790 + -3.5 33,790 + -5.2 33,791 - +1.1 33,793 + -4.1 33,793 + -2.8 33,794 - -1.3 33,794 - +0.2 33,795 + -2.9 33,795 + -3.8 33,796 - -3.9 33,796 - -3.8 33,796 - -2.8 33,796 - -2.9 33,796 - -3.7 33,796 - -2.4 33,811 + -3.8 33,864 - -2.6 33,868 + -3.8 33,882 - -2.5 33,882 - -1.0 33,947 + HMPREF1078_RS00150 0.15 +0.0 34,086 - HMPREF1078_RS00150 0.27 -3.9 34,091 + HMPREF1078_RS00150 0.27 -1.7 34,092 - HMPREF1078_RS00150 0.27 -3.7 34,109 + HMPREF1078_RS00150 0.29 -4.6 34,109 + HMPREF1078_RS00150 0.29 -1.4 34,110 - HMPREF1078_RS00150 0.29 -4.2 34,110 - HMPREF1078_RS00150 0.29 -3.1 34,110 - HMPREF1078_RS00150 0.29 -2.3 34,110 - HMPREF1078_RS00150 0.29 -0.9 34,110 - HMPREF1078_RS00150 0.29 -1.5 34,115 - HMPREF1078_RS00150 0.29 -3.9 34,253 + HMPREF1078_RS00150 0.41 -3.3 34,254 - HMPREF1078_RS00150 0.41 -2.8 34,254 - HMPREF1078_RS00150 0.41 -2.8 34,360 - HMPREF1078_RS00150 0.50 -3.1 34,392 + HMPREF1078_RS00150 0.53 -3.6 34,392 + HMPREF1078_RS00150 0.53 -2.0 34,392 + HMPREF1078_RS00150 0.53 -4.1 34,392 + HMPREF1078_RS00150 0.53 -1.7 34,392 + HMPREF1078_RS00150 0.53 -3.4 34,392 + HMPREF1078_RS00150 0.53 +0.8 34,392 + HMPREF1078_RS00150 0.53 -1.5 34,393 - HMPREF1078_RS00150 0.53 -2.4 34,393 - HMPREF1078_RS00150 0.53 -4.4 34,393 - HMPREF1078_RS00150 0.53 -3.2 34,395 + HMPREF1078_RS00150 0.53 -2.8 34,395 + HMPREF1078_RS00150 0.53 -1.2 34,396 - HMPREF1078_RS00150 0.53 -4.3 34,396 - HMPREF1078_RS00150 0.53 -3.4 34,396 - HMPREF1078_RS00150 0.53 -1.2 34,473 - HMPREF1078_RS00150 0.59 -2.0 34,551 + HMPREF1078_RS00150 0.66 -3.4 34,551 + HMPREF1078_RS00150 0.66 -2.4 34,551 + HMPREF1078_RS00150 0.66 -3.4 34,559 - HMPREF1078_RS00150 0.67 -4.5 34,559 - HMPREF1078_RS00150 0.67 -2.4 34,568 - HMPREF1078_RS00150 0.67 -4.7 34,633 + HMPREF1078_RS00150 0.73 -1.9 34,633 + HMPREF1078_RS00150 0.73 -1.0 34,690 + HMPREF1078_RS00150 0.78 -3.1
Or see this region's nucleotide sequence