Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gcl and allR are separated by 89 nucleotides allR and allA are separated by 77 nucleotides allA and allS are separated by 229 nucleotides
BNILDI_22335: gcl - glyoxylate carboligase, at 4,488,504 to 4,490,285
gcl
BNILDI_22340: allR - HTH-type transcriptional repressor AllR, at 4,490,375 to 4,491,190
allR
BNILDI_22345: allA - ureidoglycolate lyase, at 4,491,268 to 4,491,750
allA
BNILDI_22350: allS - HTH-type transcriptional activator AllS, at 4,491,980 to 4,492,906
allS
Position (kb) 4491
4492 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4490.288 kb on + strand at 4490.288 kb on + strand at 4490.295 kb on - strand at 4490.295 kb on - strand at 4490.570 kb on - strand, within allR at 4490.578 kb on + strand, within allR at 4490.580 kb on + strand, within allR at 4490.638 kb on + strand, within allR at 4490.638 kb on + strand, within allR at 4490.639 kb on - strand, within allR at 4490.793 kb on - strand, within allR at 4490.804 kb on + strand, within allR at 4490.805 kb on - strand, within allR at 4490.875 kb on + strand, within allR at 4490.943 kb on - strand, within allR at 4490.943 kb on - strand, within allR at 4490.948 kb on + strand, within allR at 4490.948 kb on + strand, within allR at 4490.949 kb on - strand, within allR at 4491.190 kb on + strand at 4491.190 kb on + strand at 4491.191 kb on - strand at 4491.194 kb on + strand at 4491.195 kb on - strand at 4491.211 kb on - strand at 4491.237 kb on + strand at 4491.238 kb on - strand at 4491.248 kb on - strand at 4491.597 kb on + strand, within allA at 4491.704 kb on + strand at 4491.705 kb on - strand at 4491.712 kb on - strand at 4491.736 kb on + strand at 4491.831 kb on + strand at 4491.911 kb on + strand at 4492.174 kb on - strand, within allS at 4492.174 kb on - strand, within allS at 4492.174 kb on - strand, within allS at 4492.213 kb on + strand, within allS at 4492.214 kb on - strand, within allS at 4492.264 kb on + strand, within allS at 4492.264 kb on + strand, within allS at 4492.264 kb on + strand, within allS at 4492.264 kb on + strand, within allS at 4492.286 kb on + strand, within allS at 4492.287 kb on - strand, within allS at 4492.370 kb on + strand, within allS at 4492.396 kb on - strand, within allS at 4492.397 kb on + strand, within allS at 4492.398 kb on - strand, within allS at 4492.451 kb on - strand, within allS at 4492.470 kb on + strand, within allS at 4492.743 kb on + strand, within allS at 4492.743 kb on + strand, within allS
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 4,490,288 + -0.7 4,490,288 + +0.2 4,490,295 - -1.0 4,490,295 - +0.0 4,490,570 - allR BNILDI_22340 0.24 -0.4 4,490,578 + allR BNILDI_22340 0.25 -2.1 4,490,580 + allR BNILDI_22340 0.25 -0.7 4,490,638 + allR BNILDI_22340 0.32 -0.3 4,490,638 + allR BNILDI_22340 0.32 +1.0 4,490,639 - allR BNILDI_22340 0.32 -0.2 4,490,793 - allR BNILDI_22340 0.51 +1.4 4,490,804 + allR BNILDI_22340 0.53 +0.3 4,490,805 - allR BNILDI_22340 0.53 -0.4 4,490,875 + allR BNILDI_22340 0.61 +0.6 4,490,943 - allR BNILDI_22340 0.70 -0.6 4,490,943 - allR BNILDI_22340 0.70 -0.6 4,490,948 + allR BNILDI_22340 0.70 +0.5 4,490,948 + allR BNILDI_22340 0.70 -0.9 4,490,949 - allR BNILDI_22340 0.70 -0.4 4,491,190 + -1.3 4,491,190 + -1.0 4,491,191 - +0.6 4,491,194 + +0.7 4,491,195 - +0.0 4,491,211 - -0.2 4,491,237 + -0.4 4,491,238 - +1.3 4,491,248 - +0.4 4,491,597 + allA BNILDI_22345 0.68 -0.9 4,491,704 + -0.1 4,491,705 - +0.1 4,491,712 - +1.1 4,491,736 + +1.1 4,491,831 + +0.1 4,491,911 + +0.4 4,492,174 - allS BNILDI_22350 0.21 +0.6 4,492,174 - allS BNILDI_22350 0.21 +0.1 4,492,174 - allS BNILDI_22350 0.21 -0.0 4,492,213 + allS BNILDI_22350 0.25 -0.6 4,492,214 - allS BNILDI_22350 0.25 +0.4 4,492,264 + allS BNILDI_22350 0.31 +0.0 4,492,264 + allS BNILDI_22350 0.31 -0.4 4,492,264 + allS BNILDI_22350 0.31 +0.3 4,492,264 + allS BNILDI_22350 0.31 -1.3 4,492,286 + allS BNILDI_22350 0.33 +0.4 4,492,287 - allS BNILDI_22350 0.33 -0.6 4,492,370 + allS BNILDI_22350 0.42 +0.1 4,492,396 - allS BNILDI_22350 0.45 +1.9 4,492,397 + allS BNILDI_22350 0.45 +0.1 4,492,398 - allS BNILDI_22350 0.45 -1.1 4,492,451 - allS BNILDI_22350 0.51 -0.3 4,492,470 + allS BNILDI_22350 0.53 -0.2 4,492,743 + allS BNILDI_22350 0.82 -1.2 4,492,743 + allS BNILDI_22350 0.82 +1.1
Or see this region's nucleotide sequence