Strain Fitness in Escherichia coli ECRC62 around BNILDI_15120

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfliK and fliJ overlap by 4 nucleotidesfliJ and fliI are separated by 18 nucleotidesfliI and fliH overlap by 1 nucleotidesfliH and fliG overlap by 8 nucleotides BNILDI_15110: fliK - flagellar hook length control protein FliK, at 3,045,184 to 3,046,311 fliK BNILDI_15115: fliJ - flagella biosynthesis chaperone FliJ, at 3,046,308 to 3,046,751 fliJ BNILDI_15120: fliI - flagellum-specific ATP synthase FliI, at 3,046,770 to 3,048,143 fliI BNILDI_15125: fliH - flagellar assembly protein FliH, at 3,048,143 to 3,048,829 fliH BNILDI_15130: fliG - flagellar motor switch protein FliG, at 3,048,822 to 3,049,817 fliG Position (kb) 3046 3047 3048 3049Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 3046.147 kb on - strand, within fliKat 3046.291 kb on + strandat 3046.584 kb on - strand, within fliJat 3046.618 kb on + strand, within fliJat 3046.771 kb on + strandat 3046.852 kb on + strandat 3046.915 kb on + strand, within fliIat 3047.633 kb on + strand, within fliIat 3047.688 kb on - strand, within fliIat 3047.793 kb on + strand, within fliIat 3048.069 kb on + strandat 3048.145 kb on - strandat 3048.305 kb on - strand, within fliHat 3048.829 kb on + strandat 3048.829 kb on + strandat 3048.829 kb on + strandat 3048.830 kb on - strandat 3048.830 kb on - strandat 3048.830 kb on - strandat 3048.830 kb on - strandat 3048.830 kb on - strandat 3048.833 kb on + strandat 3048.834 kb on - strandat 3048.834 kb on - strandat 3048.987 kb on - strand, within fliGat 3048.987 kb on - strand, within fliGat 3048.987 kb on - strand, within fliGat 3048.987 kb on - strand, within fliG

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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3,046,147 - fliK BNILDI_15110 0.85 +1.7
3,046,291 + -1.6
3,046,584 - fliJ BNILDI_15115 0.62 +1.5
3,046,618 + fliJ BNILDI_15115 0.70 +1.3
3,046,771 + +2.0
3,046,852 + +1.6
3,046,915 + fliI BNILDI_15120 0.11 +0.9
3,047,633 + fliI BNILDI_15120 0.63 +0.1
3,047,688 - fliI BNILDI_15120 0.67 +5.3
3,047,793 + fliI BNILDI_15120 0.74 +0.8
3,048,069 + -0.6
3,048,145 - +1.7
3,048,305 - fliH BNILDI_15125 0.24 +1.7
3,048,829 + +2.1
3,048,829 + +1.9
3,048,829 + -0.6
3,048,830 - +3.0
3,048,830 - +0.2
3,048,830 - +0.1
3,048,830 - +2.4
3,048,830 - +0.4
3,048,833 + +2.3
3,048,834 - +2.2
3,048,834 - +1.4
3,048,987 - fliG BNILDI_15130 0.17 +0.8
3,048,987 - fliG BNILDI_15130 0.17 +1.1
3,048,987 - fliG BNILDI_15130 0.17 +2.0
3,048,987 - fliG BNILDI_15130 0.17 +0.3

Or see this region's nucleotide sequence