Strain Fitness in Escherichia coli ECRC62 around BNILDI_13395

Experiment: Bas61

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntnuoC and nuoE are separated by 2 nucleotidesnuoE and nuoF overlap by 4 nucleotides BNILDI_13390: nuoC - NADH-quinone oxidoreductase subunit C/D, at 2,681,208 to 2,683,010 nuoC BNILDI_13395: nuoE - NADH-quinone oxidoreductase subunit NuoE, at 2,683,013 to 2,683,513 nuoE BNILDI_13400: nuoF - NADH-quinone oxidoreductase subunit NuoF, at 2,683,510 to 2,684,847 nuoF Position (kb) 2683 2684Strain fitness (log2 ratio) -2 -1 0 1 2at 2682.067 kb on - strand, within nuoCat 2682.153 kb on - strand, within nuoCat 2682.171 kb on + strand, within nuoCat 2682.171 kb on + strand, within nuoCat 2682.173 kb on + strand, within nuoCat 2682.185 kb on + strand, within nuoCat 2682.185 kb on + strand, within nuoCat 2682.185 kb on + strand, within nuoCat 2682.538 kb on - strand, within nuoCat 2682.597 kb on + strand, within nuoCat 2682.844 kb on - strandat 2683.306 kb on + strand, within nuoEat 2683.350 kb on + strand, within nuoEat 2683.508 kb on - strandat 2683.595 kb on - strandat 2683.627 kb on - strandat 2683.671 kb on - strand, within nuoFat 2683.805 kb on - strand, within nuoFat 2683.916 kb on - strand, within nuoFat 2684.040 kb on + strand, within nuoFat 2684.178 kb on + strand, within nuoFat 2684.179 kb on - strand, within nuoFat 2684.235 kb on + strand, within nuoF

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
remove
2,682,067 - nuoC BNILDI_13390 0.48 -0.0
2,682,153 - nuoC BNILDI_13390 0.52 +0.4
2,682,171 + nuoC BNILDI_13390 0.53 -1.0
2,682,171 + nuoC BNILDI_13390 0.53 -0.2
2,682,173 + nuoC BNILDI_13390 0.54 +0.2
2,682,185 + nuoC BNILDI_13390 0.54 -0.2
2,682,185 + nuoC BNILDI_13390 0.54 +0.8
2,682,185 + nuoC BNILDI_13390 0.54 -1.9
2,682,538 - nuoC BNILDI_13390 0.74 -1.4
2,682,597 + nuoC BNILDI_13390 0.77 -0.2
2,682,844 - -1.0
2,683,306 + nuoE BNILDI_13395 0.58 -0.0
2,683,350 + nuoE BNILDI_13395 0.67 -0.5
2,683,508 - +1.8
2,683,595 - +1.2
2,683,627 - +0.8
2,683,671 - nuoF BNILDI_13400 0.12 +0.2
2,683,805 - nuoF BNILDI_13400 0.22 +0.2
2,683,916 - nuoF BNILDI_13400 0.30 -1.1
2,684,040 + nuoF BNILDI_13400 0.40 -1.2
2,684,178 + nuoF BNILDI_13400 0.50 -0.7
2,684,179 - nuoF BNILDI_13400 0.50 -1.2
2,684,235 + nuoF BNILDI_13400 0.54 +1.8

Or see this region's nucleotide sequence