Strain Fitness in Escherichia coli ECRC62 around BNILDI_09185

Experiment: Bas61

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntlpxB and rnhB overlap by 4 nucleotidesrnhB and dnaE are separated by 36 nucleotides BNILDI_09180: lpxB - lipid-A-disaccharide synthase, at 1,840,982 to 1,842,130 lpxB BNILDI_09185: rnhB - ribonuclease HII, at 1,842,127 to 1,842,723 rnhB BNILDI_09190: dnaE - DNA polymerase III subunit alpha, at 1,842,760 to 1,846,242 dnaE Position (kb) 1842 1843Strain fitness (log2 ratio) -2 -1 0 1at 1842.423 kb on + strand, within rnhBat 1842.436 kb on + strand, within rnhBat 1842.453 kb on + strand, within rnhB

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
remove
1,842,423 + rnhB BNILDI_09185 0.50 -0.4
1,842,436 + rnhB BNILDI_09185 0.52 -1.9
1,842,453 + rnhB BNILDI_09185 0.55 +0.3

Or see this region's nucleotide sequence