Strain Fitness in Escherichia coli ECRC62 around BNILDI_07580

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntinsB and BNILDI_07575 are separated by 527 nucleotidesBNILDI_07575 and BNILDI_07580 are separated by 123 nucleotidesBNILDI_07580 and BNILDI_07585 are separated by 732 nucleotides BNILDI_07570: insB - Transposase and inactivated derivatives, IS1 family, at 1,508,404 to 1,508,697 insB BNILDI_07575: BNILDI_07575 - hypothetical protein, at 1,509,225 to 1,509,335 _07575 BNILDI_07580: BNILDI_07580 - biofilm development YmgB/AriR family protein, at 1,509,459 to 1,509,716 _07580 BNILDI_07585: BNILDI_07585 - esterase-like activity of phytase, at 1,510,449 to 1,511,807 _07585 Position (kb) 1509 1510Strain fitness (log2 ratio) -2 -1 0 1 2at 1508.621 kb on + strand, within insBat 1508.681 kb on + strandat 1508.759 kb on + strandat 1508.759 kb on + strandat 1508.760 kb on - strandat 1508.762 kb on - strandat 1508.762 kb on - strandat 1508.763 kb on + strandat 1508.764 kb on - strandat 1508.764 kb on - strandat 1508.773 kb on + strandat 1508.962 kb on - strandat 1508.987 kb on - strandat 1508.987 kb on - strandat 1509.026 kb on + strandat 1509.026 kb on + strandat 1509.027 kb on - strandat 1509.031 kb on - strandat 1509.064 kb on - strandat 1509.155 kb on + strandat 1509.288 kb on - strand, within BNILDI_07575at 1509.596 kb on - strand, within BNILDI_07580at 1509.723 kb on - strandat 1509.769 kb on - strandat 1509.771 kb on - strandat 1509.850 kb on - strandat 1509.900 kb on - strandat 1509.976 kb on - strandat 1509.984 kb on - strandat 1510.025 kb on + strandat 1510.070 kb on + strandat 1510.070 kb on + strandat 1510.071 kb on - strandat 1510.071 kb on - strandat 1510.074 kb on - strandat 1510.074 kb on - strandat 1510.172 kb on + strandat 1510.173 kb on - strandat 1510.212 kb on + strandat 1510.212 kb on + strandat 1510.218 kb on - strandat 1510.219 kb on + strandat 1510.219 kb on + strandat 1510.220 kb on - strandat 1510.342 kb on - strandat 1510.410 kb on - strandat 1510.417 kb on - strandat 1510.448 kb on + strandat 1510.474 kb on + strandat 1510.484 kb on + strandat 1510.530 kb on + strandat 1510.530 kb on + strandat 1510.531 kb on - strandat 1510.531 kb on - strandat 1510.616 kb on - strand, within BNILDI_07585

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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1,508,621 + insB BNILDI_07570 0.74 -0.3
1,508,681 + +1.2
1,508,759 + -0.6
1,508,759 + -2.4
1,508,760 - -0.4
1,508,762 - +0.8
1,508,762 - -0.5
1,508,763 + -0.4
1,508,764 - -0.3
1,508,764 - -0.6
1,508,773 + -1.3
1,508,962 - +0.8
1,508,987 - -0.8
1,508,987 - -0.4
1,509,026 + -0.6
1,509,026 + -0.3
1,509,027 - -0.3
1,509,031 - +0.7
1,509,064 - +1.6
1,509,155 + +0.7
1,509,288 - BNILDI_07575 0.57 +0.3
1,509,596 - BNILDI_07580 0.53 +0.8
1,509,723 - -0.3
1,509,769 - -1.9
1,509,771 - -0.5
1,509,850 - -0.5
1,509,900 - +0.7
1,509,976 - +0.4
1,509,984 - -0.4
1,510,025 + -0.6
1,510,070 + +0.5
1,510,070 + +0.9
1,510,071 - -0.7
1,510,071 - -0.4
1,510,074 - -0.4
1,510,074 - -2.2
1,510,172 + +1.9
1,510,173 - +1.0
1,510,212 + -0.2
1,510,212 + +0.7
1,510,218 - -0.6
1,510,219 + -0.7
1,510,219 + -0.1
1,510,220 - +0.4
1,510,342 - -0.6
1,510,410 - +0.1
1,510,417 - -1.9
1,510,448 + +1.3
1,510,474 + -1.1
1,510,484 + -0.3
1,510,530 + -0.1
1,510,530 + -0.6
1,510,531 - -0.6
1,510,531 - -1.2
1,510,616 - BNILDI_07585 0.12 -1.5

Or see this region's nucleotide sequence