Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt insB and BNILDI_07575 are separated by 527 nucleotides BNILDI_07575 and BNILDI_07580 are separated by 123 nucleotides BNILDI_07580 and BNILDI_07585 are separated by 732 nucleotides
BNILDI_07570: insB - Transposase and inactivated derivatives, IS1 family, at 1,508,404 to 1,508,697
insB
BNILDI_07575: BNILDI_07575 - hypothetical protein, at 1,509,225 to 1,509,335
_07575
BNILDI_07580: BNILDI_07580 - biofilm development YmgB/AriR family protein, at 1,509,459 to 1,509,716
_07580
BNILDI_07585: BNILDI_07585 - esterase-like activity of phytase, at 1,510,449 to 1,511,807
_07585
Position (kb)
1509
1510 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1508.621 kb on + strand, within insB at 1508.681 kb on + strand at 1508.759 kb on + strand at 1508.759 kb on + strand at 1508.760 kb on - strand at 1508.762 kb on - strand at 1508.762 kb on - strand at 1508.763 kb on + strand at 1508.764 kb on - strand at 1508.764 kb on - strand at 1508.773 kb on + strand at 1508.962 kb on - strand at 1508.987 kb on - strand at 1508.987 kb on - strand at 1509.026 kb on + strand at 1509.026 kb on + strand at 1509.027 kb on - strand at 1509.031 kb on - strand at 1509.064 kb on - strand at 1509.155 kb on + strand at 1509.288 kb on - strand, within BNILDI_07575 at 1509.596 kb on - strand, within BNILDI_07580 at 1509.723 kb on - strand at 1509.769 kb on - strand at 1509.771 kb on - strand at 1509.850 kb on - strand at 1509.900 kb on - strand at 1509.976 kb on - strand at 1509.984 kb on - strand at 1510.025 kb on + strand at 1510.070 kb on + strand at 1510.070 kb on + strand at 1510.071 kb on - strand at 1510.071 kb on - strand at 1510.074 kb on - strand at 1510.074 kb on - strand at 1510.172 kb on + strand at 1510.173 kb on - strand at 1510.212 kb on + strand at 1510.212 kb on + strand at 1510.218 kb on - strand at 1510.219 kb on + strand at 1510.219 kb on + strand at 1510.220 kb on - strand at 1510.342 kb on - strand at 1510.410 kb on - strand at 1510.417 kb on - strand at 1510.448 kb on + strand at 1510.474 kb on + strand at 1510.484 kb on + strand at 1510.530 kb on + strand at 1510.530 kb on + strand at 1510.531 kb on - strand at 1510.531 kb on - strand at 1510.616 kb on - strand, within BNILDI_07585
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 1,508,621 + insB BNILDI_07570 0.74 -0.3 1,508,681 + +1.2 1,508,759 + -0.6 1,508,759 + -2.4 1,508,760 - -0.4 1,508,762 - +0.8 1,508,762 - -0.5 1,508,763 + -0.4 1,508,764 - -0.3 1,508,764 - -0.6 1,508,773 + -1.3 1,508,962 - +0.8 1,508,987 - -0.8 1,508,987 - -0.4 1,509,026 + -0.6 1,509,026 + -0.3 1,509,027 - -0.3 1,509,031 - +0.7 1,509,064 - +1.6 1,509,155 + +0.7 1,509,288 - BNILDI_07575 0.57 +0.3 1,509,596 - BNILDI_07580 0.53 +0.8 1,509,723 - -0.3 1,509,769 - -1.9 1,509,771 - -0.5 1,509,850 - -0.5 1,509,900 - +0.7 1,509,976 - +0.4 1,509,984 - -0.4 1,510,025 + -0.6 1,510,070 + +0.5 1,510,070 + +0.9 1,510,071 - -0.7 1,510,071 - -0.4 1,510,074 - -0.4 1,510,074 - -2.2 1,510,172 + +1.9 1,510,173 - +1.0 1,510,212 + -0.2 1,510,212 + +0.7 1,510,218 - -0.6 1,510,219 + -0.7 1,510,219 + -0.1 1,510,220 - +0.4 1,510,342 - -0.6 1,510,410 - +0.1 1,510,417 - -1.9 1,510,448 + +1.3 1,510,474 + -1.1 1,510,484 + -0.3 1,510,530 + -0.1 1,510,530 + -0.6 1,510,531 - -0.6 1,510,531 - -1.2 1,510,616 - BNILDI_07585 0.12 -1.5
Or see this region's nucleotide sequence