Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lldD and trmL are separated by 185 nucleotides trmL and cysE are separated by 52 nucleotides cysE and gpsA are separated by 79 nucleotides
BNILDI_03865: lldD - quinone-dependent L-lactate dehydrogenase, at 764,687 to 765,877
lldD
BNILDI_03870: trmL - tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL, at 766,063 to 766,536
trmL
BNILDI_03875: cysE - serine O-acetyltransferase, at 766,589 to 767,410
cysE
BNILDI_03880: gpsA - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase, at 767,490 to 768,509
gpsA
Position (kb) 766
767 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 765.071 kb on + strand, within lldD at 765.071 kb on + strand, within lldD at 765.071 kb on + strand, within lldD at 765.075 kb on + strand, within lldD at 765.076 kb on - strand, within lldD at 765.200 kb on - strand, within lldD at 765.230 kb on + strand, within lldD at 765.301 kb on + strand, within lldD at 765.302 kb on - strand, within lldD at 765.302 kb on - strand, within lldD at 765.302 kb on - strand, within lldD at 765.305 kb on - strand, within lldD at 765.305 kb on - strand, within lldD at 765.305 kb on - strand, within lldD at 765.315 kb on - strand, within lldD at 765.344 kb on + strand, within lldD at 765.345 kb on - strand, within lldD at 765.345 kb on - strand, within lldD at 765.345 kb on - strand, within lldD at 765.345 kb on - strand, within lldD at 765.364 kb on + strand, within lldD at 765.365 kb on - strand, within lldD at 765.474 kb on + strand, within lldD at 765.475 kb on - strand, within lldD at 765.534 kb on + strand, within lldD at 765.534 kb on + strand, within lldD at 765.534 kb on + strand, within lldD at 765.534 kb on + strand, within lldD at 765.534 kb on + strand, within lldD at 765.535 kb on - strand, within lldD at 765.637 kb on + strand, within lldD at 765.722 kb on - strand, within lldD at 765.729 kb on + strand, within lldD at 765.937 kb on + strand at 765.937 kb on + strand at 765.937 kb on + strand at 765.937 kb on + strand at 765.937 kb on + strand at 765.938 kb on - strand at 765.938 kb on - strand at 765.941 kb on + strand at 765.942 kb on - strand at 765.942 kb on - strand at 766.051 kb on + strand at 766.105 kb on - strand at 766.152 kb on + strand, within trmL at 766.334 kb on - strand, within trmL at 766.486 kb on + strand, within trmL at 766.487 kb on - strand, within trmL at 766.535 kb on - strand at 766.543 kb on + strand at 766.560 kb on + strand at 766.560 kb on + strand at 766.561 kb on - strand at 766.616 kb on - strand at 766.616 kb on - strand at 766.616 kb on - strand at 766.622 kb on - strand at 767.433 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 765,071 + lldD BNILDI_03865 0.32 -0.7 765,071 + lldD BNILDI_03865 0.32 -0.5 765,071 + lldD BNILDI_03865 0.32 -0.4 765,075 + lldD BNILDI_03865 0.33 +0.2 765,076 - lldD BNILDI_03865 0.33 -1.0 765,200 - lldD BNILDI_03865 0.43 +0.3 765,230 + lldD BNILDI_03865 0.46 -0.6 765,301 + lldD BNILDI_03865 0.52 -0.3 765,302 - lldD BNILDI_03865 0.52 +1.2 765,302 - lldD BNILDI_03865 0.52 +1.1 765,302 - lldD BNILDI_03865 0.52 +1.4 765,305 - lldD BNILDI_03865 0.52 +0.1 765,305 - lldD BNILDI_03865 0.52 -1.3 765,305 - lldD BNILDI_03865 0.52 -0.4 765,315 - lldD BNILDI_03865 0.53 +0.4 765,344 + lldD BNILDI_03865 0.55 +0.2 765,345 - lldD BNILDI_03865 0.55 +2.0 765,345 - lldD BNILDI_03865 0.55 +0.4 765,345 - lldD BNILDI_03865 0.55 -1.6 765,345 - lldD BNILDI_03865 0.55 -0.3 765,364 + lldD BNILDI_03865 0.57 -0.4 765,365 - lldD BNILDI_03865 0.57 +0.2 765,474 + lldD BNILDI_03865 0.66 -0.8 765,475 - lldD BNILDI_03865 0.66 -0.6 765,534 + lldD BNILDI_03865 0.71 +0.4 765,534 + lldD BNILDI_03865 0.71 +1.2 765,534 + lldD BNILDI_03865 0.71 -0.4 765,534 + lldD BNILDI_03865 0.71 -0.9 765,534 + lldD BNILDI_03865 0.71 -2.3 765,535 - lldD BNILDI_03865 0.71 -0.8 765,637 + lldD BNILDI_03865 0.80 +0.6 765,722 - lldD BNILDI_03865 0.87 -0.0 765,729 + lldD BNILDI_03865 0.87 +0.7 765,937 + +0.8 765,937 + -0.1 765,937 + -0.7 765,937 + -1.2 765,937 + +0.6 765,938 - +1.1 765,938 - -0.4 765,941 + -0.0 765,942 - +0.4 765,942 - +3.0 766,051 + -0.8 766,105 - -0.7 766,152 + trmL BNILDI_03870 0.19 -0.9 766,334 - trmL BNILDI_03870 0.57 +0.2 766,486 + trmL BNILDI_03870 0.89 +2.0 766,487 - trmL BNILDI_03870 0.89 -2.5 766,535 - +0.4 766,543 + -0.0 766,560 + -0.3 766,560 + -1.5 766,561 - -0.2 766,616 - -0.1 766,616 - +0.1 766,616 - -0.4 766,622 - +0.0 767,433 - -1.6
Or see this region's nucleotide sequence