Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lptF and BNILDI_00645 are separated by 30 nucleotides BNILDI_00645 and BNILDI_00650 are separated by 11 nucleotides BNILDI_00650 and yghQ overlap by 1 nucleotides
BNILDI_00640: lptF - LPS export ABC transporter permease LptF, at 124,506 to 125,576
lptF
BNILDI_00645: BNILDI_00645 - YtfJ family protein, at 125,607 to 126,167
_00645
BNILDI_00650: BNILDI_00650 - Ybl138, at 126,179 to 127,003
_00650
BNILDI_00655: yghQ - Inner membrane protein YghQ, at 127,003 to 128,352
yghQ
Position (kb) 126
127
128 Strain fitness (log2 ratio) -2
-1
0
1
2 at 125.188 kb on + strand, within lptF at 125.218 kb on + strand, within lptF at 125.218 kb on + strand, within lptF at 125.218 kb on + strand, within lptF at 125.219 kb on - strand, within lptF at 125.219 kb on - strand, within lptF at 125.219 kb on - strand, within lptF at 125.243 kb on + strand, within lptF at 125.248 kb on - strand, within lptF at 125.278 kb on + strand, within lptF at 125.335 kb on + strand, within lptF at 125.335 kb on + strand, within lptF at 125.335 kb on + strand, within lptF at 125.336 kb on - strand, within lptF at 125.336 kb on - strand, within lptF at 125.368 kb on + strand, within lptF at 125.368 kb on + strand, within lptF at 125.368 kb on + strand, within lptF at 125.369 kb on - strand, within lptF at 125.369 kb on - strand, within lptF at 125.446 kb on - strand, within lptF at 125.446 kb on - strand, within lptF at 125.543 kb on + strand at 125.557 kb on + strand at 125.649 kb on + strand at 125.650 kb on - strand at 125.833 kb on + strand, within BNILDI_00645 at 125.834 kb on - strand, within BNILDI_00645 at 125.834 kb on - strand, within BNILDI_00645 at 125.922 kb on - strand, within BNILDI_00645 at 125.922 kb on - strand, within BNILDI_00645 at 125.968 kb on + strand, within BNILDI_00645 at 125.994 kb on + strand, within BNILDI_00645 at 125.995 kb on - strand, within BNILDI_00645 at 125.995 kb on - strand, within BNILDI_00645 at 125.995 kb on - strand, within BNILDI_00645 at 125.995 kb on - strand, within BNILDI_00645 at 126.070 kb on + strand, within BNILDI_00645 at 126.070 kb on + strand, within BNILDI_00645 at 126.071 kb on - strand, within BNILDI_00645 at 126.071 kb on - strand, within BNILDI_00645 at 126.210 kb on - strand at 126.252 kb on + strand at 126.253 kb on - strand at 126.356 kb on - strand, within BNILDI_00650 at 126.387 kb on + strand, within BNILDI_00650 at 126.513 kb on - strand, within BNILDI_00650 at 126.572 kb on + strand, within BNILDI_00650 at 126.601 kb on - strand, within BNILDI_00650 at 126.698 kb on + strand, within BNILDI_00650 at 126.747 kb on + strand, within BNILDI_00650 at 126.748 kb on - strand, within BNILDI_00650 at 126.748 kb on - strand, within BNILDI_00650 at 126.751 kb on + strand, within BNILDI_00650 at 126.752 kb on - strand, within BNILDI_00650 at 126.807 kb on - strand, within BNILDI_00650 at 126.858 kb on - strand, within BNILDI_00650 at 126.897 kb on - strand, within BNILDI_00650 at 126.920 kb on - strand, within BNILDI_00650 at 126.962 kb on + strand at 127.027 kb on - strand at 127.027 kb on - strand at 127.028 kb on + strand at 127.028 kb on + strand at 127.060 kb on + strand at 127.061 kb on - strand at 127.109 kb on + strand at 127.110 kb on - strand at 127.162 kb on + strand, within yghQ at 127.228 kb on + strand, within yghQ at 127.299 kb on - strand, within yghQ at 127.299 kb on - strand, within yghQ at 127.354 kb on - strand, within yghQ at 127.414 kb on + strand, within yghQ at 127.415 kb on - strand, within yghQ at 127.445 kb on - strand, within yghQ at 127.445 kb on - strand, within yghQ at 127.733 kb on + strand, within yghQ at 127.733 kb on + strand, within yghQ at 127.733 kb on + strand, within yghQ at 127.734 kb on - strand, within yghQ at 127.734 kb on - strand, within yghQ at 127.856 kb on - strand, within yghQ at 127.864 kb on + strand, within yghQ at 127.975 kb on + strand, within yghQ at 127.976 kb on - strand, within yghQ at 127.976 kb on - strand, within yghQ at 127.999 kb on + strand, within yghQ at 127.999 kb on + strand, within yghQ at 128.000 kb on - strand, within yghQ at 128.000 kb on - strand, within yghQ
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 125,188 + lptF BNILDI_00640 0.64 +0.4 125,218 + lptF BNILDI_00640 0.66 -0.2 125,218 + lptF BNILDI_00640 0.66 +0.3 125,218 + lptF BNILDI_00640 0.66 -0.6 125,219 - lptF BNILDI_00640 0.67 +0.6 125,219 - lptF BNILDI_00640 0.67 +0.5 125,219 - lptF BNILDI_00640 0.67 -0.2 125,243 + lptF BNILDI_00640 0.69 -0.8 125,248 - lptF BNILDI_00640 0.69 +0.0 125,278 + lptF BNILDI_00640 0.72 -0.3 125,335 + lptF BNILDI_00640 0.77 -1.0 125,335 + lptF BNILDI_00640 0.77 +0.3 125,335 + lptF BNILDI_00640 0.77 +0.3 125,336 - lptF BNILDI_00640 0.77 -0.1 125,336 - lptF BNILDI_00640 0.77 -0.6 125,368 + lptF BNILDI_00640 0.80 +0.2 125,368 + lptF BNILDI_00640 0.80 -0.8 125,368 + lptF BNILDI_00640 0.80 +0.5 125,369 - lptF BNILDI_00640 0.81 -0.9 125,369 - lptF BNILDI_00640 0.81 +0.1 125,446 - lptF BNILDI_00640 0.88 -0.4 125,446 - lptF BNILDI_00640 0.88 +2.3 125,543 + -0.3 125,557 + -0.7 125,649 + +0.7 125,650 - +0.9 125,833 + BNILDI_00645 0.40 -1.1 125,834 - BNILDI_00645 0.40 -0.6 125,834 - BNILDI_00645 0.40 -0.9 125,922 - BNILDI_00645 0.56 -0.8 125,922 - BNILDI_00645 0.56 -1.4 125,968 + BNILDI_00645 0.64 -0.1 125,994 + BNILDI_00645 0.69 -0.0 125,995 - BNILDI_00645 0.69 +1.9 125,995 - BNILDI_00645 0.69 -0.6 125,995 - BNILDI_00645 0.69 +0.3 125,995 - BNILDI_00645 0.69 +0.3 126,070 + BNILDI_00645 0.83 +0.7 126,070 + BNILDI_00645 0.83 -0.4 126,071 - BNILDI_00645 0.83 +0.1 126,071 - BNILDI_00645 0.83 +0.8 126,210 - +0.4 126,252 + +1.3 126,253 - +0.3 126,356 - BNILDI_00650 0.21 -1.6 126,387 + BNILDI_00650 0.25 -0.9 126,513 - BNILDI_00650 0.40 -2.2 126,572 + BNILDI_00650 0.48 -0.5 126,601 - BNILDI_00650 0.51 +1.3 126,698 + BNILDI_00650 0.63 +0.4 126,747 + BNILDI_00650 0.69 +0.4 126,748 - BNILDI_00650 0.69 -0.0 126,748 - BNILDI_00650 0.69 -1.5 126,751 + BNILDI_00650 0.69 -1.4 126,752 - BNILDI_00650 0.69 -1.4 126,807 - BNILDI_00650 0.76 +0.9 126,858 - BNILDI_00650 0.82 -0.1 126,897 - BNILDI_00650 0.87 +0.5 126,920 - BNILDI_00650 0.90 -0.1 126,962 + -0.7 127,027 - -0.0 127,027 - -0.1 127,028 + +0.3 127,028 + -0.4 127,060 + +1.9 127,061 - +0.6 127,109 + -0.7 127,110 - +0.7 127,162 + yghQ BNILDI_00655 0.12 -0.4 127,228 + yghQ BNILDI_00655 0.17 +0.9 127,299 - yghQ BNILDI_00655 0.22 +0.1 127,299 - yghQ BNILDI_00655 0.22 +0.9 127,354 - yghQ BNILDI_00655 0.26 -0.4 127,414 + yghQ BNILDI_00655 0.30 -1.3 127,415 - yghQ BNILDI_00655 0.31 -1.1 127,445 - yghQ BNILDI_00655 0.33 -0.3 127,445 - yghQ BNILDI_00655 0.33 -0.8 127,733 + yghQ BNILDI_00655 0.54 +0.1 127,733 + yghQ BNILDI_00655 0.54 -0.0 127,733 + yghQ BNILDI_00655 0.54 +0.6 127,734 - yghQ BNILDI_00655 0.54 -0.1 127,734 - yghQ BNILDI_00655 0.54 +1.4 127,856 - yghQ BNILDI_00655 0.63 +1.1 127,864 + yghQ BNILDI_00655 0.64 -1.3 127,975 + yghQ BNILDI_00655 0.72 -0.2 127,976 - yghQ BNILDI_00655 0.72 +0.0 127,976 - yghQ BNILDI_00655 0.72 -0.4 127,999 + yghQ BNILDI_00655 0.74 -1.2 127,999 + yghQ BNILDI_00655 0.74 -0.1 128,000 - yghQ BNILDI_00655 0.74 -0.2 128,000 - yghQ BNILDI_00655 0.74 -0.3
Or see this region's nucleotide sequence