Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS03330

Experiment: GAM 1 x (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1078_RS03320 and HMPREF1078_RS03325 are separated by 32 nucleotidesHMPREF1078_RS03325 and HMPREF1078_RS03330 overlap by 11 nucleotidesHMPREF1078_RS03330 and HMPREF1078_RS03335 are separated by 19 nucleotidesHMPREF1078_RS03335 and HMPREF1078_RS03340 overlap by 7 nucleotides HMPREF1078_RS03320: HMPREF1078_RS03320 - membrane protein, at 784,541 to 785,668 _RS03320 HMPREF1078_RS03325: HMPREF1078_RS03325 - DUF5045 domain-containing protein, at 785,701 to 786,387 _RS03325 HMPREF1078_RS03330: HMPREF1078_RS03330 - hypothetical protein, at 786,377 to 787,072 _RS03330 HMPREF1078_RS03335: HMPREF1078_RS03335 - hypothetical protein, at 787,092 to 787,832 _RS03335 HMPREF1078_RS03340: HMPREF1078_RS03340 - TraG family conjugative transposon ATPase, at 787,826 to 790,660 _RS03340 Position (kb) 786 787 788Strain fitness (log2 ratio) -2 -1 0 1 2at 785.422 kb on + strand, within HMPREF1078_RS03320at 785.422 kb on + strand, within HMPREF1078_RS03320at 785.654 kb on - strandat 785.654 kb on - strandat 785.673 kb on + strandat 785.781 kb on - strand, within HMPREF1078_RS03325at 785.833 kb on + strand, within HMPREF1078_RS03325at 785.834 kb on - strand, within HMPREF1078_RS03325at 785.834 kb on - strand, within HMPREF1078_RS03325at 785.835 kb on + strand, within HMPREF1078_RS03325at 785.835 kb on + strand, within HMPREF1078_RS03325at 785.837 kb on + strand, within HMPREF1078_RS03325at 785.837 kb on + strand, within HMPREF1078_RS03325at 785.837 kb on + strand, within HMPREF1078_RS03325at 785.838 kb on - strand, within HMPREF1078_RS03325at 785.838 kb on - strand, within HMPREF1078_RS03325at 785.838 kb on - strand, within HMPREF1078_RS03325at 785.843 kb on - strand, within HMPREF1078_RS03325at 785.845 kb on - strand, within HMPREF1078_RS03325at 785.919 kb on + strand, within HMPREF1078_RS03325at 785.924 kb on + strand, within HMPREF1078_RS03325at 785.955 kb on + strand, within HMPREF1078_RS03325at 785.956 kb on - strand, within HMPREF1078_RS03325at 785.975 kb on + strand, within HMPREF1078_RS03325at 785.984 kb on + strand, within HMPREF1078_RS03325at 785.984 kb on + strand, within HMPREF1078_RS03325at 785.985 kb on - strand, within HMPREF1078_RS03325at 786.002 kb on - strand, within HMPREF1078_RS03325at 786.030 kb on + strand, within HMPREF1078_RS03325at 786.032 kb on + strand, within HMPREF1078_RS03325at 786.032 kb on + strand, within HMPREF1078_RS03325at 786.046 kb on - strand, within HMPREF1078_RS03325at 786.047 kb on + strand, within HMPREF1078_RS03325at 786.048 kb on - strand, within HMPREF1078_RS03325at 786.120 kb on + strand, within HMPREF1078_RS03325at 786.121 kb on - strand, within HMPREF1078_RS03325at 786.191 kb on + strand, within HMPREF1078_RS03325at 786.191 kb on + strand, within HMPREF1078_RS03325at 786.230 kb on + strand, within HMPREF1078_RS03325at 786.234 kb on - strand, within HMPREF1078_RS03325at 786.307 kb on + strand, within HMPREF1078_RS03325at 786.308 kb on - strand, within HMPREF1078_RS03325at 786.327 kb on + strandat 786.336 kb on - strandat 786.343 kb on + strandat 786.388 kb on - strandat 786.422 kb on + strandat 786.460 kb on + strand, within HMPREF1078_RS03330at 786.463 kb on - strand, within HMPREF1078_RS03330at 786.463 kb on - strand, within HMPREF1078_RS03330at 786.501 kb on + strand, within HMPREF1078_RS03330at 786.502 kb on - strand, within HMPREF1078_RS03330at 786.514 kb on + strand, within HMPREF1078_RS03330at 786.514 kb on + strand, within HMPREF1078_RS03330at 786.515 kb on - strand, within HMPREF1078_RS03330at 786.518 kb on + strand, within HMPREF1078_RS03330at 786.518 kb on + strand, within HMPREF1078_RS03330at 786.519 kb on - strand, within HMPREF1078_RS03330at 786.519 kb on - strand, within HMPREF1078_RS03330at 786.519 kb on - strand, within HMPREF1078_RS03330at 786.521 kb on + strand, within HMPREF1078_RS03330at 786.521 kb on + strand, within HMPREF1078_RS03330at 786.521 kb on + strand, within HMPREF1078_RS03330at 786.525 kb on + strand, within HMPREF1078_RS03330at 786.526 kb on - strand, within HMPREF1078_RS03330at 786.526 kb on - strand, within HMPREF1078_RS03330at 786.627 kb on + strand, within HMPREF1078_RS03330at 786.628 kb on - strand, within HMPREF1078_RS03330at 786.648 kb on - strand, within HMPREF1078_RS03330at 786.681 kb on + strand, within HMPREF1078_RS03330at 786.711 kb on - strand, within HMPREF1078_RS03330at 786.724 kb on + strand, within HMPREF1078_RS03330at 786.744 kb on + strand, within HMPREF1078_RS03330at 786.763 kb on - strand, within HMPREF1078_RS03330at 786.814 kb on - strand, within HMPREF1078_RS03330at 786.898 kb on - strand, within HMPREF1078_RS03330at 786.993 kb on - strand, within HMPREF1078_RS03330at 787.031 kb on + strandat 787.032 kb on - strandat 787.033 kb on + strandat 787.033 kb on + strandat 787.044 kb on + strandat 787.051 kb on + strandat 787.055 kb on + strandat 787.055 kb on + strandat 787.057 kb on + strandat 787.081 kb on + strandat 787.081 kb on + strandat 787.082 kb on - strandat 787.083 kb on + strandat 787.084 kb on - strandat 787.128 kb on + strandat 787.216 kb on + strand, within HMPREF1078_RS03335at 787.217 kb on - strand, within HMPREF1078_RS03335at 787.217 kb on - strand, within HMPREF1078_RS03335at 787.217 kb on - strand, within HMPREF1078_RS03335at 787.249 kb on + strand, within HMPREF1078_RS03335at 787.249 kb on + strand, within HMPREF1078_RS03335at 787.250 kb on - strand, within HMPREF1078_RS03335at 787.255 kb on - strand, within HMPREF1078_RS03335at 787.273 kb on + strand, within HMPREF1078_RS03335at 787.273 kb on + strand, within HMPREF1078_RS03335at 787.273 kb on + strand, within HMPREF1078_RS03335at 787.273 kb on + strand, within HMPREF1078_RS03335at 787.273 kb on + strand, within HMPREF1078_RS03335at 787.274 kb on - strand, within HMPREF1078_RS03335at 787.274 kb on - strand, within HMPREF1078_RS03335at 787.304 kb on - strand, within HMPREF1078_RS03335at 787.304 kb on - strand, within HMPREF1078_RS03335at 787.392 kb on - strand, within HMPREF1078_RS03335at 787.540 kb on - strand, within HMPREF1078_RS03335at 787.540 kb on - strand, within HMPREF1078_RS03335at 787.547 kb on + strand, within HMPREF1078_RS03335at 787.548 kb on - strand, within HMPREF1078_RS03335at 787.550 kb on - strand, within HMPREF1078_RS03335at 787.550 kb on - strand, within HMPREF1078_RS03335at 787.552 kb on + strand, within HMPREF1078_RS03335at 787.578 kb on + strand, within HMPREF1078_RS03335at 787.579 kb on - strand, within HMPREF1078_RS03335at 787.616 kb on + strand, within HMPREF1078_RS03335at 787.633 kb on + strand, within HMPREF1078_RS03335at 787.633 kb on + strand, within HMPREF1078_RS03335at 787.634 kb on - strand, within HMPREF1078_RS03335at 787.775 kb on + strandat 787.775 kb on + strandat 787.776 kb on - strandat 787.796 kb on + strandat 787.800 kb on + strandat 787.800 kb on + strandat 787.801 kb on - strandat 787.803 kb on - strandat 787.803 kb on - strandat 787.832 kb on + strandat 787.840 kb on + strandat 787.993 kb on + strandat 787.996 kb on + strandat 787.996 kb on + strandat 787.996 kb on + strandat 787.997 kb on - strandat 787.999 kb on - strandat 788.008 kb on - strandat 788.034 kb on + strandat 788.034 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction GAM 1 x (C)
remove
785,422 + HMPREF1078_RS03320 0.78 -0.7
785,422 + HMPREF1078_RS03320 0.78 -1.1
785,654 - +0.2
785,654 - +0.0
785,673 + -1.0
785,781 - HMPREF1078_RS03325 0.12 -2.5
785,833 + HMPREF1078_RS03325 0.19 -0.6
785,834 - HMPREF1078_RS03325 0.19 -0.6
785,834 - HMPREF1078_RS03325 0.19 -0.6
785,835 + HMPREF1078_RS03325 0.20 -0.9
785,835 + HMPREF1078_RS03325 0.20 -1.6
785,837 + HMPREF1078_RS03325 0.20 +0.1
785,837 + HMPREF1078_RS03325 0.20 +0.5
785,837 + HMPREF1078_RS03325 0.20 -0.3
785,838 - HMPREF1078_RS03325 0.20 +0.5
785,838 - HMPREF1078_RS03325 0.20 +0.5
785,838 - HMPREF1078_RS03325 0.20 +0.5
785,843 - HMPREF1078_RS03325 0.21 -0.7
785,845 - HMPREF1078_RS03325 0.21 +0.1
785,919 + HMPREF1078_RS03325 0.32 +0.0
785,924 + HMPREF1078_RS03325 0.32 -1.3
785,955 + HMPREF1078_RS03325 0.37 -0.3
785,956 - HMPREF1078_RS03325 0.37 -0.2
785,975 + HMPREF1078_RS03325 0.40 +0.2
785,984 + HMPREF1078_RS03325 0.41 +0.9
785,984 + HMPREF1078_RS03325 0.41 +0.5
785,985 - HMPREF1078_RS03325 0.41 -0.8
786,002 - HMPREF1078_RS03325 0.44 +0.6
786,030 + HMPREF1078_RS03325 0.48 -0.3
786,032 + HMPREF1078_RS03325 0.48 +0.3
786,032 + HMPREF1078_RS03325 0.48 -1.0
786,046 - HMPREF1078_RS03325 0.50 +1.0
786,047 + HMPREF1078_RS03325 0.50 -0.2
786,048 - HMPREF1078_RS03325 0.51 +0.3
786,120 + HMPREF1078_RS03325 0.61 +0.0
786,121 - HMPREF1078_RS03325 0.61 +0.7
786,191 + HMPREF1078_RS03325 0.71 -0.7
786,191 + HMPREF1078_RS03325 0.71 -1.0
786,230 + HMPREF1078_RS03325 0.77 -2.5
786,234 - HMPREF1078_RS03325 0.78 +0.8
786,307 + HMPREF1078_RS03325 0.88 +0.3
786,308 - HMPREF1078_RS03325 0.88 -1.8
786,327 + +1.2
786,336 - +1.0
786,343 + -0.3
786,388 - -2.2
786,422 + -0.7
786,460 + HMPREF1078_RS03330 0.12 +0.8
786,463 - HMPREF1078_RS03330 0.12 -2.2
786,463 - HMPREF1078_RS03330 0.12 -0.1
786,501 + HMPREF1078_RS03330 0.18 -1.5
786,502 - HMPREF1078_RS03330 0.18 -2.3
786,514 + HMPREF1078_RS03330 0.20 -1.2
786,514 + HMPREF1078_RS03330 0.20 -0.2
786,515 - HMPREF1078_RS03330 0.20 -1.1
786,518 + HMPREF1078_RS03330 0.20 -0.3
786,518 + HMPREF1078_RS03330 0.20 +0.2
786,519 - HMPREF1078_RS03330 0.20 -1.2
786,519 - HMPREF1078_RS03330 0.20 -0.2
786,519 - HMPREF1078_RS03330 0.20 -1.0
786,521 + HMPREF1078_RS03330 0.21 +0.2
786,521 + HMPREF1078_RS03330 0.21 -0.5
786,521 + HMPREF1078_RS03330 0.21 +0.1
786,525 + HMPREF1078_RS03330 0.21 -1.7
786,526 - HMPREF1078_RS03330 0.21 -0.5
786,526 - HMPREF1078_RS03330 0.21 +1.3
786,627 + HMPREF1078_RS03330 0.36 -0.9
786,628 - HMPREF1078_RS03330 0.36 +0.4
786,648 - HMPREF1078_RS03330 0.39 -0.3
786,681 + HMPREF1078_RS03330 0.44 +0.0
786,711 - HMPREF1078_RS03330 0.48 +1.4
786,724 + HMPREF1078_RS03330 0.50 +1.0
786,744 + HMPREF1078_RS03330 0.53 +0.3
786,763 - HMPREF1078_RS03330 0.55 +0.3
786,814 - HMPREF1078_RS03330 0.63 -1.0
786,898 - HMPREF1078_RS03330 0.75 +0.0
786,993 - HMPREF1078_RS03330 0.89 +0.5
787,031 + -0.6
787,032 - +0.9
787,033 + -0.3
787,033 + +0.6
787,044 + +0.6
787,051 + -0.2
787,055 + -1.7
787,055 + -0.6
787,057 + +0.4
787,081 + -2.7
787,081 + -0.9
787,082 - +1.0
787,083 + -0.3
787,084 - +0.8
787,128 + -1.8
787,216 + HMPREF1078_RS03335 0.17 +0.5
787,217 - HMPREF1078_RS03335 0.17 -0.5
787,217 - HMPREF1078_RS03335 0.17 -0.6
787,217 - HMPREF1078_RS03335 0.17 -2.1
787,249 + HMPREF1078_RS03335 0.21 -2.0
787,249 + HMPREF1078_RS03335 0.21 -0.6
787,250 - HMPREF1078_RS03335 0.21 -0.1
787,255 - HMPREF1078_RS03335 0.22 -0.5
787,273 + HMPREF1078_RS03335 0.24 +0.4
787,273 + HMPREF1078_RS03335 0.24 +0.4
787,273 + HMPREF1078_RS03335 0.24 +0.2
787,273 + HMPREF1078_RS03335 0.24 +0.9
787,273 + HMPREF1078_RS03335 0.24 +0.1
787,274 - HMPREF1078_RS03335 0.25 +1.0
787,274 - HMPREF1078_RS03335 0.25 +0.2
787,304 - HMPREF1078_RS03335 0.29 +0.6
787,304 - HMPREF1078_RS03335 0.29 -1.8
787,392 - HMPREF1078_RS03335 0.40 +1.3
787,540 - HMPREF1078_RS03335 0.60 -1.0
787,540 - HMPREF1078_RS03335 0.60 -1.7
787,547 + HMPREF1078_RS03335 0.61 +0.2
787,548 - HMPREF1078_RS03335 0.62 +1.0
787,550 - HMPREF1078_RS03335 0.62 -0.2
787,550 - HMPREF1078_RS03335 0.62 -0.6
787,552 + HMPREF1078_RS03335 0.62 +0.1
787,578 + HMPREF1078_RS03335 0.66 +0.5
787,579 - HMPREF1078_RS03335 0.66 -1.0
787,616 + HMPREF1078_RS03335 0.71 +0.1
787,633 + HMPREF1078_RS03335 0.73 +0.4
787,633 + HMPREF1078_RS03335 0.73 -0.6
787,634 - HMPREF1078_RS03335 0.73 -0.7
787,775 + -2.4
787,775 + +0.0
787,776 - +0.3
787,796 + -1.1
787,800 + +0.3
787,800 + +0.5
787,801 - -0.5
787,803 - -0.8
787,803 - +0.1
787,832 + +0.5
787,840 + +0.4
787,993 + -2.1
787,996 + +0.3
787,996 + +1.5
787,996 + -0.5
787,997 - -2.2
787,999 - +0.4
788,008 - +0.5
788,034 + +2.1
788,034 + -1.3

Or see this region's nucleotide sequence