Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12560

Experiment: Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX)
2,387,345	+				+1.1
2,387,346	-				-2.0
2,387,349	+				+1.1
2,387,349	+				-0.2
2,387,430	+				+0.4
2,387,435	+				-0.2
2,387,435	+				+2.7
2,387,482	+				+0.9
2,387,482	+				-0.7
2,387,483	-				-1.8
2,387,558	+		LU632_RS12560	0.60	-0.9
2,387,559	-		LU632_RS12560	0.60	-3.0
2,387,603	+				-1.6
2,387,607	-				-0.3
2,387,607	-				+0.9
2,387,610	+				+0.2
2,387,808	+		LU632_RS12565	0.23	-0.5
2,387,808	+		LU632_RS12565	0.23	-1.3
2,387,808	+		LU632_RS12565	0.23	+0.0
2,387,948	+		LU632_RS12565	0.41	+0.1
2,387,948	+		LU632_RS12565	0.41	+2.3
2,387,948	+		LU632_RS12565	0.41	-0.1
2,387,949	-		LU632_RS12565	0.41	+3.0
2,387,962	+		LU632_RS12565	0.43	+0.0
2,387,969	+		LU632_RS12565	0.44	-2.3
2,387,979	+		LU632_RS12565	0.45	-0.3
2,388,282	+		LU632_RS12565	0.84	+2.7
2,388,283	-		LU632_RS12565	0.84	-0.6
2,388,283	-		LU632_RS12565	0.84	-3.0