Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08885

Experiment: Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX)
1,677,166	-				-5.2
1,677,291	+		LU632_RS08880	0.26	-2.8
1,677,599	-		LU632_RS08880	0.68	-3.7
1,677,657	-		LU632_RS08880	0.76	-1.8
1,677,737	-		LU632_RS08880	0.87	-4.0
1,678,060	-		LU632_RS08885	0.29	-2.0
1,678,060	-		LU632_RS08885	0.29	-4.7
1,678,182	-		LU632_RS08885	0.45	-2.0
1,678,292	+		LU632_RS08885	0.60	-4.3
1,678,357	-		LU632_RS08885	0.68	-3.8
1,678,428	+		LU632_RS08885	0.77	-4.5
1,678,428	+		LU632_RS08885	0.77	-2.3
1,678,582	+				+1.4
1,678,783	+				-0.2
1,679,188	+	gndA	LU632_RS08890	0.29	+0.4
1,679,189	-	gndA	LU632_RS08890	0.29	+1.4
1,679,205	-	gndA	LU632_RS08890	0.30	-1.9