Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06825

Experiment: Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX)
1,311,550	-				+0.0
1,311,631	-				+0.2
1,311,631	-				-2.2
1,311,753	+				-0.7
1,312,285	-				-1.1
1,312,633	+		LU632_RS06825	0.62	-3.2
1,312,709	+		LU632_RS06825	0.78	-1.9
1,312,812	+				-0.0
1,312,813	-				+0.4
1,312,876	+				-0.5
1,312,996	+		LU632_RS06830	0.29	+0.5
1,313,041	+		LU632_RS06830	0.38	-1.3
1,313,041	+		LU632_RS06830	0.38	+1.4
1,313,077	+		LU632_RS06830	0.46	+0.2
1,313,078	-		LU632_RS06830	0.46	+1.4
1,313,093	+		LU632_RS06830	0.49	+0.9
1,313,093	+		LU632_RS06830	0.49	+0.1
1,313,104	+		LU632_RS06830	0.51	-0.5
1,313,154	-		LU632_RS06830	0.62	-1.6
1,313,154	-		LU632_RS06830	0.62	-1.7
1,313,261	-		LU632_RS06830	0.84	-1.2
1,313,261	-		LU632_RS06830	0.84	-1.8
1,313,276	-		LU632_RS06830	0.87	-1.4
1,313,303	-				+1.4
1,313,303	-				-0.7
1,313,303	-				-0.4
1,313,338	+				+0.6
1,313,338	+				-2.3
1,313,339	-				-1.0
1,313,339	-				-1.6
1,313,378	+				-0.7
1,313,394	+				+0.4
1,313,395	-				-2.5
1,313,398	+				+0.7
1,313,398	+				-0.4
1,313,398	+				-0.8
1,313,399	-				-0.1
1,313,399	-				-1.1
1,313,401	-				+2.3
1,313,406	+				+3.1
1,313,466	-				-1.3
1,313,670	-				-0.3
1,313,670	-				+0.6
1,313,754	+		LU632_RS06835	0.13	+2.8
1,313,789	+		LU632_RS06835	0.20	-0.1
1,313,798	-		LU632_RS06835	0.21	+1.0