Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02820 and thiQ are separated by 232 nucleotides thiQ and thiP overlap by 17 nucleotides
LU632_RS02820: LU632_RS02820 - DedA family protein, at 573,647 to 574,414
_RS02820
LU632_RS02825: thiQ - thiamine ABC transporter ATP-binding protein ThiQ, at 574,647 to 575,348
thiQ
LU632_RS02830: thiP - thiamine/thiamine pyrophosphate ABC transporter permease ThiP, at 575,332 to 576,942
thiP
Position (kb) 574
575
576 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 573.647 kb on - strand at 573.647 kb on - strand at 573.670 kb on + strand at 573.670 kb on + strand at 573.671 kb on - strand at 573.671 kb on - strand at 573.671 kb on - strand at 573.671 kb on - strand at 573.672 kb on + strand at 573.672 kb on + strand at 573.916 kb on + strand, within LU632_RS02820 at 573.975 kb on + strand, within LU632_RS02820 at 573.975 kb on + strand, within LU632_RS02820 at 573.975 kb on + strand, within LU632_RS02820 at 574.093 kb on - strand, within LU632_RS02820 at 574.160 kb on - strand, within LU632_RS02820 at 574.165 kb on + strand, within LU632_RS02820 at 574.172 kb on - strand, within LU632_RS02820 at 574.177 kb on + strand, within LU632_RS02820 at 574.177 kb on + strand, within LU632_RS02820 at 574.177 kb on + strand, within LU632_RS02820 at 574.178 kb on - strand, within LU632_RS02820 at 574.178 kb on - strand, within LU632_RS02820 at 574.178 kb on - strand, within LU632_RS02820 at 574.343 kb on - strand at 574.386 kb on + strand at 574.386 kb on + strand at 574.386 kb on + strand at 574.412 kb on + strand at 574.489 kb on - strand at 574.493 kb on - strand at 574.494 kb on - strand at 574.649 kb on - strand at 574.748 kb on + strand, within thiQ at 574.748 kb on + strand, within thiQ at 574.748 kb on + strand, within thiQ at 574.791 kb on + strand, within thiQ at 574.808 kb on + strand, within thiQ at 574.808 kb on + strand, within thiQ at 574.808 kb on + strand, within thiQ at 574.809 kb on - strand, within thiQ at 574.809 kb on - strand, within thiQ at 574.824 kb on + strand, within thiQ at 574.824 kb on + strand, within thiQ at 574.825 kb on - strand, within thiQ at 574.825 kb on - strand, within thiQ at 575.013 kb on - strand, within thiQ at 575.091 kb on + strand, within thiQ at 575.283 kb on + strand at 575.284 kb on - strand at 575.284 kb on - strand at 575.317 kb on + strand at 575.333 kb on + strand at 575.343 kb on + strand at 575.639 kb on + strand, within thiP at 575.657 kb on + strand, within thiP at 575.658 kb on - strand, within thiP at 575.716 kb on + strand, within thiP at 575.716 kb on + strand, within thiP at 575.717 kb on - strand, within thiP at 575.717 kb on - strand, within thiP at 575.947 kb on + strand, within thiP at 575.947 kb on + strand, within thiP at 575.977 kb on + strand, within thiP at 575.980 kb on + strand, within thiP at 575.981 kb on - strand, within thiP at 576.088 kb on + strand, within thiP
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS) remove 573,647 - +0.6 573,647 - -2.9 573,670 + -1.2 573,670 + -0.2 573,671 - -0.9 573,671 - -1.6 573,671 - -1.0 573,671 - -1.8 573,672 + -1.9 573,672 + +2.4 573,916 + LU632_RS02820 0.35 +1.2 573,975 + LU632_RS02820 0.43 -3.3 573,975 + LU632_RS02820 0.43 +1.3 573,975 + LU632_RS02820 0.43 +0.2 574,093 - LU632_RS02820 0.58 -0.6 574,160 - LU632_RS02820 0.67 -3.0 574,165 + LU632_RS02820 0.67 +2.6 574,172 - LU632_RS02820 0.68 -1.3 574,177 + LU632_RS02820 0.69 -3.9 574,177 + LU632_RS02820 0.69 +1.3 574,177 + LU632_RS02820 0.69 +0.9 574,178 - LU632_RS02820 0.69 -0.9 574,178 - LU632_RS02820 0.69 -0.7 574,178 - LU632_RS02820 0.69 -0.7 574,343 - -0.6 574,386 + +0.4 574,386 + -0.0 574,386 + +0.7 574,412 + -0.3 574,489 - +0.7 574,493 - -0.3 574,494 - -1.7 574,649 - -0.4 574,748 + thiQ LU632_RS02825 0.14 -1.9 574,748 + thiQ LU632_RS02825 0.14 -1.7 574,748 + thiQ LU632_RS02825 0.14 -2.2 574,791 + thiQ LU632_RS02825 0.21 -0.6 574,808 + thiQ LU632_RS02825 0.23 -1.5 574,808 + thiQ LU632_RS02825 0.23 -0.1 574,808 + thiQ LU632_RS02825 0.23 -0.1 574,809 - thiQ LU632_RS02825 0.23 -0.6 574,809 - thiQ LU632_RS02825 0.23 +1.2 574,824 + thiQ LU632_RS02825 0.25 -0.8 574,824 + thiQ LU632_RS02825 0.25 -0.4 574,825 - thiQ LU632_RS02825 0.25 -0.4 574,825 - thiQ LU632_RS02825 0.25 -1.3 575,013 - thiQ LU632_RS02825 0.52 +0.2 575,091 + thiQ LU632_RS02825 0.63 +3.4 575,283 + +1.9 575,284 - +2.4 575,284 - -0.3 575,317 + -1.8 575,333 + -0.8 575,343 + -0.4 575,639 + thiP LU632_RS02830 0.19 -0.7 575,657 + thiP LU632_RS02830 0.20 -0.3 575,658 - thiP LU632_RS02830 0.20 -0.0 575,716 + thiP LU632_RS02830 0.24 +0.1 575,716 + thiP LU632_RS02830 0.24 -1.9 575,717 - thiP LU632_RS02830 0.24 -1.2 575,717 - thiP LU632_RS02830 0.24 +0.2 575,947 + thiP LU632_RS02830 0.38 -2.0 575,947 + thiP LU632_RS02830 0.38 -0.9 575,977 + thiP LU632_RS02830 0.40 +1.0 575,980 + thiP LU632_RS02830 0.40 +2.0 575,981 - thiP LU632_RS02830 0.40 -1.5 576,088 + thiP LU632_RS02830 0.47 -1.0
Or see this region's nucleotide sequence