Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sodA and LU632_RS00130 are separated by 260 nucleotides LU632_RS00130 and LU632_RS00135 overlap by 2 nucleotides LU632_RS00135 and LU632_RS00140 are separated by 71 nucleotides
LU632_RS00125: sodA - superoxide dismutase [Mn], at 23,519 to 24,136
sodA
LU632_RS00130: LU632_RS00130 - ATP-binding cassette domain-containing protein, at 24,397 to 25,389
_RS00130
LU632_RS00135: LU632_RS00135 - YibL family ribosome-associated protein, at 25,388 to 25,750
_RS00135
LU632_RS00140: LU632_RS00140 - MltR family transcriptional regulator, at 25,822 to 26,346
_RS00140
Position (kb) 24
25
26 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 23.446 kb on + strand at 23.455 kb on - strand at 23.455 kb on - strand at 23.468 kb on + strand at 23.472 kb on + strand at 23.472 kb on + strand at 24.134 kb on + strand at 24.135 kb on - strand at 24.135 kb on - strand at 24.138 kb on + strand at 24.139 kb on - strand at 24.207 kb on + strand at 24.208 kb on - strand at 24.301 kb on - strand at 24.305 kb on + strand at 24.310 kb on + strand at 24.311 kb on - strand at 24.377 kb on + strand at 24.378 kb on - strand at 24.384 kb on + strand at 24.397 kb on - strand at 24.429 kb on + strand at 24.430 kb on - strand at 24.527 kb on - strand, within LU632_RS00130 at 24.642 kb on + strand, within LU632_RS00130 at 24.642 kb on + strand, within LU632_RS00130 at 24.643 kb on - strand, within LU632_RS00130 at 24.643 kb on - strand, within LU632_RS00130 at 24.643 kb on - strand, within LU632_RS00130 at 24.706 kb on + strand, within LU632_RS00130 at 24.706 kb on + strand, within LU632_RS00130 at 24.706 kb on + strand, within LU632_RS00130 at 24.707 kb on - strand, within LU632_RS00130 at 24.738 kb on + strand, within LU632_RS00130 at 24.738 kb on + strand, within LU632_RS00130 at 24.814 kb on - strand, within LU632_RS00130 at 24.834 kb on + strand, within LU632_RS00130 at 25.120 kb on - strand, within LU632_RS00130 at 25.123 kb on + strand, within LU632_RS00130 at 25.123 kb on + strand, within LU632_RS00130 at 25.124 kb on - strand, within LU632_RS00130 at 25.124 kb on - strand, within LU632_RS00130 at 25.124 kb on - strand, within LU632_RS00130 at 25.124 kb on - strand, within LU632_RS00130 at 25.502 kb on - strand, within LU632_RS00135 at 25.522 kb on + strand, within LU632_RS00135 at 25.757 kb on + strand at 25.771 kb on + strand at 25.771 kb on + strand at 25.772 kb on - strand at 25.772 kb on - strand at 25.772 kb on - strand at 25.772 kb on - strand at 26.090 kb on + strand, within LU632_RS00140 at 26.121 kb on - strand, within LU632_RS00140 at 26.121 kb on - strand, within LU632_RS00140 at 26.189 kb on + strand, within LU632_RS00140 at 26.189 kb on + strand, within LU632_RS00140 at 26.189 kb on + strand, within LU632_RS00140 at 26.189 kb on + strand, within LU632_RS00140 at 26.190 kb on - strand, within LU632_RS00140 at 26.190 kb on - strand, within LU632_RS00140 at 26.275 kb on - strand, within LU632_RS00140 at 26.363 kb on + strand at 26.364 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS) remove 23,446 + +1.5 23,455 - +0.1 23,455 - -1.9 23,468 + -0.7 23,472 + +1.9 23,472 + +0.3 24,134 + -1.7 24,135 - -1.6 24,135 - -0.1 24,138 + -1.1 24,139 - +0.3 24,207 + +0.3 24,208 - -1.1 24,301 - -1.1 24,305 + -1.3 24,310 + +2.5 24,311 - -0.3 24,377 + -0.4 24,378 - -0.0 24,384 + -2.6 24,397 - -0.1 24,429 + -0.1 24,430 - +0.7 24,527 - LU632_RS00130 0.13 -0.6 24,642 + LU632_RS00130 0.25 +4.0 24,642 + LU632_RS00130 0.25 +1.9 24,643 - LU632_RS00130 0.25 +0.2 24,643 - LU632_RS00130 0.25 +1.9 24,643 - LU632_RS00130 0.25 -2.0 24,706 + LU632_RS00130 0.31 +1.9 24,706 + LU632_RS00130 0.31 -0.3 24,706 + LU632_RS00130 0.31 -0.2 24,707 - LU632_RS00130 0.31 -0.4 24,738 + LU632_RS00130 0.34 +1.0 24,738 + LU632_RS00130 0.34 +2.0 24,814 - LU632_RS00130 0.42 -0.3 24,834 + LU632_RS00130 0.44 -0.4 25,120 - LU632_RS00130 0.73 -1.4 25,123 + LU632_RS00130 0.73 +0.3 25,123 + LU632_RS00130 0.73 +0.5 25,124 - LU632_RS00130 0.73 +2.8 25,124 - LU632_RS00130 0.73 -0.7 25,124 - LU632_RS00130 0.73 -2.7 25,124 - LU632_RS00130 0.73 -0.3 25,502 - LU632_RS00135 0.31 -1.8 25,522 + LU632_RS00135 0.37 +0.1 25,757 + -1.8 25,771 + -0.1 25,771 + -0.7 25,772 - -0.3 25,772 - +2.0 25,772 - +1.7 25,772 - +1.5 26,090 + LU632_RS00140 0.51 -2.2 26,121 - LU632_RS00140 0.57 -0.1 26,121 - LU632_RS00140 0.57 -0.1 26,189 + LU632_RS00140 0.70 +0.0 26,189 + LU632_RS00140 0.70 -0.6 26,189 + LU632_RS00140 0.70 +1.2 26,189 + LU632_RS00140 0.70 -0.1 26,190 - LU632_RS00140 0.70 -0.2 26,190 - LU632_RS00140 0.70 +0.2 26,275 - LU632_RS00140 0.86 -1.9 26,363 + +1.7 26,364 - -0.5
Or see this region's nucleotide sequence