Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt katB and LU632_RS04180 are separated by 362 nucleotides LU632_RS04180 and LU632_RS04185 are separated by 350 nucleotides LU632_RS04185 and LU632_RS04190 are separated by 453 nucleotides
LU632_RS04175: katB - catalase, at 828,476 to 829,942
katB
LU632_RS04180: LU632_RS04180 - hypothetical protein, at 830,305 to 830,469
_RS04180
LU632_RS04185: LU632_RS04185 - transglycosylase SLT domain-containing protein, at 830,820 to 831,302
_RS04185
LU632_RS04190: LU632_RS04190 - hypothetical protein, at 831,756 to 831,893
_RS04190
Position (kb) 830
831
832 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 829.923 kb on - strand at 830.023 kb on + strand at 830.023 kb on + strand at 830.024 kb on - strand at 830.137 kb on + strand at 830.230 kb on + strand at 830.230 kb on + strand at 830.230 kb on + strand at 830.231 kb on - strand at 830.263 kb on + strand at 830.263 kb on + strand at 830.264 kb on - strand at 830.264 kb on - strand at 830.264 kb on - strand at 830.282 kb on + strand at 830.283 kb on - strand at 830.348 kb on - strand, within LU632_RS04180 at 830.369 kb on + strand, within LU632_RS04180 at 830.369 kb on + strand, within LU632_RS04180 at 830.372 kb on + strand, within LU632_RS04180 at 830.458 kb on - strand at 830.556 kb on - strand at 830.588 kb on + strand at 830.589 kb on - strand at 830.589 kb on - strand at 830.631 kb on + strand at 830.632 kb on - strand at 830.632 kb on - strand at 830.632 kb on - strand at 830.654 kb on - strand at 830.727 kb on - strand at 830.730 kb on + strand at 830.734 kb on - strand at 831.128 kb on - strand, within LU632_RS04185 at 831.776 kb on + strand, within LU632_RS04190 at 831.842 kb on + strand, within LU632_RS04190 at 831.924 kb on + strand at 832.058 kb on - strand at 832.104 kb on - strand at 832.107 kb on + strand at 832.207 kb on - strand at 832.207 kb on - strand at 832.268 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2) remove 829,923 - -1.9 830,023 + -2.4 830,023 + +2.2 830,024 - +0.6 830,137 + +2.1 830,230 + +0.6 830,230 + +0.9 830,230 + -1.2 830,231 - -1.5 830,263 + -2.8 830,263 + -0.7 830,264 - +0.3 830,264 - -0.0 830,264 - -0.2 830,282 + +3.8 830,283 - +0.5 830,348 - LU632_RS04180 0.26 -0.1 830,369 + LU632_RS04180 0.39 +2.1 830,369 + LU632_RS04180 0.39 -0.8 830,372 + LU632_RS04180 0.41 -0.2 830,458 - -1.4 830,556 - -0.2 830,588 + -0.3 830,589 - +0.5 830,589 - -1.7 830,631 + -0.2 830,632 - +1.0 830,632 - -0.1 830,632 - -0.6 830,654 - +1.1 830,727 - +0.1 830,730 + -0.4 830,734 - +0.2 831,128 - LU632_RS04185 0.64 +0.4 831,776 + LU632_RS04190 0.14 +0.6 831,842 + LU632_RS04190 0.62 +1.6 831,924 + -0.6 832,058 - +0.9 832,104 - +1.1 832,107 + +0.6 832,207 - +1.6 832,207 - -2.3 832,268 - -1.5
Or see this region's nucleotide sequence