Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02990 and MPMX19_02991 are separated by 64 nucleotides MPMX19_02991 and MPMX19_02992 are separated by 89 nucleotides
MPMX19_02990: MPMX19_02990 - hypothetical protein, at 251,506 to 252,522
_02990
MPMX19_02991: MPMX19_02991 - Taurine import ATP-binding protein TauB, at 252,587 to 253,411
_02991
MPMX19_02992: MPMX19_02992 - hypothetical protein, at 253,501 to 254,865
_02992
Position (kb) 252
253
254 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 251.599 kb on + strand at 251.599 kb on + strand at 251.599 kb on + strand at 251.599 kb on + strand at 251.600 kb on - strand at 251.600 kb on - strand at 251.600 kb on - strand at 251.600 kb on - strand at 251.600 kb on - strand at 251.600 kb on - strand at 251.605 kb on + strand at 251.605 kb on + strand at 251.605 kb on + strand at 251.606 kb on - strand at 251.606 kb on - strand at 251.606 kb on - strand at 251.626 kb on + strand, within MPMX19_02990 at 251.626 kb on + strand, within MPMX19_02990 at 251.626 kb on + strand, within MPMX19_02990 at 251.626 kb on + strand, within MPMX19_02990 at 251.627 kb on - strand, within MPMX19_02990 at 251.627 kb on - strand, within MPMX19_02990 at 251.627 kb on - strand, within MPMX19_02990 at 251.627 kb on - strand, within MPMX19_02990 at 251.627 kb on - strand, within MPMX19_02990 at 251.627 kb on - strand, within MPMX19_02990 at 251.627 kb on - strand, within MPMX19_02990 at 251.627 kb on - strand, within MPMX19_02990 at 251.629 kb on + strand, within MPMX19_02990 at 251.650 kb on + strand, within MPMX19_02990 at 251.650 kb on + strand, within MPMX19_02990 at 251.651 kb on - strand, within MPMX19_02990 at 251.743 kb on + strand, within MPMX19_02990 at 251.743 kb on + strand, within MPMX19_02990 at 251.744 kb on - strand, within MPMX19_02990 at 251.744 kb on - strand, within MPMX19_02990 at 251.744 kb on - strand, within MPMX19_02990 at 251.744 kb on - strand, within MPMX19_02990 at 252.032 kb on + strand, within MPMX19_02990 at 252.032 kb on + strand, within MPMX19_02990 at 252.032 kb on + strand, within MPMX19_02990 at 252.043 kb on + strand, within MPMX19_02990 at 252.043 kb on + strand, within MPMX19_02990 at 252.043 kb on + strand, within MPMX19_02990 at 252.044 kb on - strand, within MPMX19_02990 at 252.044 kb on - strand, within MPMX19_02990 at 252.044 kb on - strand, within MPMX19_02990 at 252.044 kb on - strand, within MPMX19_02990 at 252.044 kb on - strand, within MPMX19_02990 at 252.044 kb on - strand, within MPMX19_02990 at 252.044 kb on - strand, within MPMX19_02990 at 252.116 kb on - strand, within MPMX19_02990 at 252.331 kb on + strand, within MPMX19_02990 at 252.331 kb on + strand, within MPMX19_02990 at 252.332 kb on - strand, within MPMX19_02990 at 252.460 kb on + strand at 252.460 kb on + strand at 252.460 kb on + strand at 252.461 kb on - strand at 252.461 kb on - strand at 252.461 kb on - strand at 252.520 kb on + strand at 252.521 kb on - strand at 252.521 kb on - strand at 252.521 kb on - strand at 252.521 kb on - strand at 252.681 kb on - strand, within MPMX19_02991 at 252.681 kb on - strand, within MPMX19_02991 at 252.681 kb on - strand, within MPMX19_02991 at 252.974 kb on + strand, within MPMX19_02991 at 253.034 kb on + strand, within MPMX19_02991 at 253.034 kb on + strand, within MPMX19_02991 at 253.034 kb on + strand, within MPMX19_02991 at 253.035 kb on - strand, within MPMX19_02991 at 253.035 kb on - strand, within MPMX19_02991 at 253.035 kb on - strand, within MPMX19_02991 at 253.035 kb on - strand, within MPMX19_02991 at 253.035 kb on - strand, within MPMX19_02991 at 253.035 kb on - strand, within MPMX19_02991 at 253.035 kb on - strand, within MPMX19_02991 at 253.035 kb on - strand, within MPMX19_02991 at 253.035 kb on - strand, within MPMX19_02991 at 253.035 kb on - strand, within MPMX19_02991 at 253.035 kb on - strand, within MPMX19_02991 at 253.298 kb on + strand, within MPMX19_02991 at 253.298 kb on + strand, within MPMX19_02991 at 253.298 kb on + strand, within MPMX19_02991 at 253.298 kb on + strand, within MPMX19_02991 at 253.298 kb on + strand, within MPMX19_02991 at 253.298 kb on + strand, within MPMX19_02991 at 253.298 kb on + strand, within MPMX19_02991 at 253.299 kb on - strand, within MPMX19_02991 at 253.299 kb on - strand, within MPMX19_02991 at 253.299 kb on - strand, within MPMX19_02991 at 253.299 kb on - strand, within MPMX19_02991 at 253.409 kb on + strand at 253.409 kb on + strand at 253.410 kb on - strand at 253.540 kb on + strand at 253.541 kb on - strand at 253.541 kb on - strand at 253.541 kb on - strand at 253.541 kb on - strand at 253.695 kb on + strand, within MPMX19_02992 at 253.695 kb on + strand, within MPMX19_02992 at 253.695 kb on + strand, within MPMX19_02992 at 253.696 kb on - strand, within MPMX19_02992 at 253.696 kb on - strand, within MPMX19_02992 at 253.696 kb on - strand, within MPMX19_02992 at 253.696 kb on - strand, within MPMX19_02992 at 253.768 kb on + strand, within MPMX19_02992 at 253.768 kb on + strand, within MPMX19_02992 at 253.768 kb on + strand, within MPMX19_02992 at 253.768 kb on + strand, within MPMX19_02992 at 253.768 kb on + strand, within MPMX19_02992 at 253.768 kb on + strand, within MPMX19_02992 at 253.769 kb on - strand, within MPMX19_02992 at 253.769 kb on - strand, within MPMX19_02992 at 253.769 kb on - strand, within MPMX19_02992 at 253.769 kb on - strand, within MPMX19_02992 at 253.769 kb on - strand, within MPMX19_02992 at 253.816 kb on + strand, within MPMX19_02992 at 253.817 kb on - strand, within MPMX19_02992 at 254.224 kb on + strand, within MPMX19_02992 at 254.224 kb on + strand, within MPMX19_02992 at 254.225 kb on - strand, within MPMX19_02992 at 254.308 kb on + strand, within MPMX19_02992 at 254.309 kb on - strand, within MPMX19_02992 at 254.309 kb on - strand, within MPMX19_02992 at 254.408 kb on - strand, within MPMX19_02992
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 251,599 + +0.4 251,599 + -0.9 251,599 + +0.9 251,599 + -0.2 251,600 - -0.1 251,600 - +0.8 251,600 - +0.9 251,600 - +0.4 251,600 - -0.1 251,600 - -0.3 251,605 + +0.3 251,605 + -0.4 251,605 + +0.2 251,606 - -2.0 251,606 - -0.1 251,606 - -0.9 251,626 + MPMX19_02990 0.12 +1.9 251,626 + MPMX19_02990 0.12 +0.1 251,626 + MPMX19_02990 0.12 +0.0 251,626 + MPMX19_02990 0.12 +0.4 251,627 - MPMX19_02990 0.12 +0.2 251,627 - MPMX19_02990 0.12 -0.7 251,627 - MPMX19_02990 0.12 -0.1 251,627 - MPMX19_02990 0.12 -1.1 251,627 - MPMX19_02990 0.12 -0.0 251,627 - MPMX19_02990 0.12 -2.8 251,627 - MPMX19_02990 0.12 -1.6 251,627 - MPMX19_02990 0.12 +0.3 251,629 + MPMX19_02990 0.12 -1.1 251,650 + MPMX19_02990 0.14 -1.1 251,650 + MPMX19_02990 0.14 -0.0 251,651 - MPMX19_02990 0.14 +0.9 251,743 + MPMX19_02990 0.23 -0.5 251,743 + MPMX19_02990 0.23 +0.3 251,744 - MPMX19_02990 0.23 -0.0 251,744 - MPMX19_02990 0.23 +0.0 251,744 - MPMX19_02990 0.23 -0.6 251,744 - MPMX19_02990 0.23 -2.2 252,032 + MPMX19_02990 0.52 +0.7 252,032 + MPMX19_02990 0.52 +0.1 252,032 + MPMX19_02990 0.52 -0.6 252,043 + MPMX19_02990 0.53 -0.9 252,043 + MPMX19_02990 0.53 -0.9 252,043 + MPMX19_02990 0.53 -0.6 252,044 - MPMX19_02990 0.53 -0.5 252,044 - MPMX19_02990 0.53 +0.1 252,044 - MPMX19_02990 0.53 -0.8 252,044 - MPMX19_02990 0.53 +0.7 252,044 - MPMX19_02990 0.53 -1.5 252,044 - MPMX19_02990 0.53 -0.8 252,044 - MPMX19_02990 0.53 -1.1 252,116 - MPMX19_02990 0.60 +1.1 252,331 + MPMX19_02990 0.81 -1.6 252,331 + MPMX19_02990 0.81 +0.5 252,332 - MPMX19_02990 0.81 -0.2 252,460 + +0.1 252,460 + -0.9 252,460 + -2.1 252,461 - -0.9 252,461 - -0.1 252,461 - -1.3 252,520 + -0.8 252,521 - -1.1 252,521 - +1.0 252,521 - -1.0 252,521 - -0.5 252,681 - MPMX19_02991 0.11 -1.8 252,681 - MPMX19_02991 0.11 -0.3 252,681 - MPMX19_02991 0.11 -0.1 252,974 + MPMX19_02991 0.47 -1.1 253,034 + MPMX19_02991 0.54 -1.4 253,034 + MPMX19_02991 0.54 -0.1 253,034 + MPMX19_02991 0.54 +1.3 253,035 - MPMX19_02991 0.54 -0.0 253,035 - MPMX19_02991 0.54 +1.1 253,035 - MPMX19_02991 0.54 -1.8 253,035 - MPMX19_02991 0.54 +0.5 253,035 - MPMX19_02991 0.54 -0.1 253,035 - MPMX19_02991 0.54 -0.1 253,035 - MPMX19_02991 0.54 -0.1 253,035 - MPMX19_02991 0.54 -0.6 253,035 - MPMX19_02991 0.54 -2.2 253,035 - MPMX19_02991 0.54 -0.7 253,035 - MPMX19_02991 0.54 -1.9 253,298 + MPMX19_02991 0.86 -1.1 253,298 + MPMX19_02991 0.86 -0.5 253,298 + MPMX19_02991 0.86 -1.5 253,298 + MPMX19_02991 0.86 -1.9 253,298 + MPMX19_02991 0.86 -0.2 253,298 + MPMX19_02991 0.86 -1.9 253,298 + MPMX19_02991 0.86 -0.9 253,299 - MPMX19_02991 0.86 -1.0 253,299 - MPMX19_02991 0.86 -0.7 253,299 - MPMX19_02991 0.86 +1.4 253,299 - MPMX19_02991 0.86 -0.6 253,409 + +0.8 253,409 + +0.5 253,410 - +0.1 253,540 + -0.1 253,541 - +0.3 253,541 - +0.5 253,541 - +0.1 253,541 - -0.6 253,695 + MPMX19_02992 0.14 -0.5 253,695 + MPMX19_02992 0.14 +0.9 253,695 + MPMX19_02992 0.14 -0.9 253,696 - MPMX19_02992 0.14 +0.7 253,696 - MPMX19_02992 0.14 +0.2 253,696 - MPMX19_02992 0.14 -0.3 253,696 - MPMX19_02992 0.14 -0.0 253,768 + MPMX19_02992 0.20 +0.5 253,768 + MPMX19_02992 0.20 -1.1 253,768 + MPMX19_02992 0.20 +0.1 253,768 + MPMX19_02992 0.20 +0.8 253,768 + MPMX19_02992 0.20 +1.5 253,768 + MPMX19_02992 0.20 +1.3 253,769 - MPMX19_02992 0.20 -0.6 253,769 - MPMX19_02992 0.20 +0.5 253,769 - MPMX19_02992 0.20 +0.1 253,769 - MPMX19_02992 0.20 -1.8 253,769 - MPMX19_02992 0.20 -0.9 253,816 + MPMX19_02992 0.23 +0.3 253,817 - MPMX19_02992 0.23 +0.6 254,224 + MPMX19_02992 0.53 +0.5 254,224 + MPMX19_02992 0.53 -2.3 254,225 - MPMX19_02992 0.53 -0.8 254,308 + MPMX19_02992 0.59 -0.7 254,309 - MPMX19_02992 0.59 -1.8 254,309 - MPMX19_02992 0.59 -0.6 254,408 - MPMX19_02992 0.66 -0.3
Or see this region's nucleotide sequence