Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS14555 and HMPREF1078_RS14560 are separated by 6 nucleotides HMPREF1078_RS14560 and HMPREF1078_RS14565 are separated by 99 nucleotides HMPREF1078_RS14565 and HMPREF1078_RS14570 are separated by 3 nucleotides HMPREF1078_RS14570 and HMPREF1078_RS14575 are separated by 2 nucleotides
HMPREF1078_RS14555: HMPREF1078_RS14555 - CDP-alcohol phosphatidyltransferase family protein, at 410,897 to 411,784
_RS14555
HMPREF1078_RS14560: HMPREF1078_RS14560 - lysophospholipid acyltransferase family protein, at 411,791 to 412,618
_RS14560
HMPREF1078_RS14565: HMPREF1078_RS14565 - sigma-54 dependent transcriptional regulator, at 412,718 to 413,905
_RS14565
HMPREF1078_RS14570: HMPREF1078_RS14570 - LptE family protein, at 413,909 to 414,421
_RS14570
HMPREF1078_RS14575: HMPREF1078_RS14575 - hypothetical protein, at 414,424 to 415,191
_RS14575
Position (kb) 412
413
414 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 411.778 kb on + strand at 411.807 kb on + strand at 411.813 kb on + strand at 411.813 kb on + strand at 411.823 kb on - strand at 411.985 kb on + strand, within HMPREF1078_RS14560 at 412.064 kb on - strand, within HMPREF1078_RS14560 at 412.099 kb on - strand, within HMPREF1078_RS14560 at 412.227 kb on + strand, within HMPREF1078_RS14560 at 412.227 kb on + strand, within HMPREF1078_RS14560 at 412.313 kb on - strand, within HMPREF1078_RS14560 at 412.391 kb on + strand, within HMPREF1078_RS14560 at 412.391 kb on + strand, within HMPREF1078_RS14560 at 412.392 kb on - strand, within HMPREF1078_RS14560 at 412.473 kb on + strand, within HMPREF1078_RS14560 at 412.598 kb on - strand at 412.598 kb on - strand at 412.601 kb on + strand at 412.601 kb on + strand at 412.610 kb on - strand at 412.629 kb on + strand at 412.684 kb on + strand at 412.684 kb on + strand at 412.695 kb on + strand at 412.705 kb on + strand at 412.708 kb on + strand at 412.717 kb on + strand at 412.762 kb on + strand at 412.768 kb on + strand at 412.884 kb on + strand, within HMPREF1078_RS14565 at 412.916 kb on + strand, within HMPREF1078_RS14565 at 412.920 kb on + strand, within HMPREF1078_RS14565 at 413.728 kb on + strand, within HMPREF1078_RS14565 at 414.440 kb on + strand at 414.480 kb on + strand at 414.481 kb on - strand at 414.481 kb on - strand at 414.495 kb on - strand at 414.576 kb on - strand, within HMPREF1078_RS14575 at 414.576 kb on - strand, within HMPREF1078_RS14575 at 414.610 kb on + strand, within HMPREF1078_RS14575 at 414.610 kb on + strand, within HMPREF1078_RS14575 at 414.610 kb on + strand, within HMPREF1078_RS14575 at 414.610 kb on + strand, within HMPREF1078_RS14575 at 414.610 kb on + strand, within HMPREF1078_RS14575 at 414.610 kb on + strand, within HMPREF1078_RS14575 at 414.610 kb on + strand, within HMPREF1078_RS14575 at 414.610 kb on + strand, within HMPREF1078_RS14575 at 414.610 kb on + strand, within HMPREF1078_RS14575 at 414.611 kb on - strand, within HMPREF1078_RS14575 at 414.624 kb on + strand, within HMPREF1078_RS14575 at 414.624 kb on + strand, within HMPREF1078_RS14575 at 414.645 kb on - strand, within HMPREF1078_RS14575 at 414.806 kb on - strand, within HMPREF1078_RS14575 at 414.806 kb on - strand, within HMPREF1078_RS14575 at 414.806 kb on - strand, within HMPREF1078_RS14575 at 414.811 kb on + strand, within HMPREF1078_RS14575 at 414.811 kb on + strand, within HMPREF1078_RS14575 at 414.812 kb on - strand, within HMPREF1078_RS14575 at 414.903 kb on + strand, within HMPREF1078_RS14575
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 411,778 + -0.2 411,807 + +2.0 411,813 + -0.3 411,813 + +1.5 411,823 - +3.0 411,985 + HMPREF1078_RS14560 0.23 +2.0 412,064 - HMPREF1078_RS14560 0.33 +1.0 412,099 - HMPREF1078_RS14560 0.37 +2.0 412,227 + HMPREF1078_RS14560 0.53 +1.0 412,227 + HMPREF1078_RS14560 0.53 +3.0 412,313 - HMPREF1078_RS14560 0.63 +1.5 412,391 + HMPREF1078_RS14560 0.72 +1.5 412,391 + HMPREF1078_RS14560 0.72 +3.0 412,392 - HMPREF1078_RS14560 0.73 +3.0 412,473 + HMPREF1078_RS14560 0.82 +0.7 412,598 - -1.9 412,598 - -1.0 412,601 + +0.5 412,601 + -1.0 412,610 - -0.4 412,629 + -1.7 412,684 + -1.3 412,684 + +0.4 412,695 + +0.1 412,705 + -1.7 412,708 + +0.5 412,717 + -2.0 412,762 + -0.1 412,768 + +1.0 412,884 + HMPREF1078_RS14565 0.14 +0.7 412,916 + HMPREF1078_RS14565 0.17 +1.5 412,920 + HMPREF1078_RS14565 0.17 -0.3 413,728 + HMPREF1078_RS14565 0.85 +0.5 414,440 + -2.5 414,480 + -0.5 414,481 - +0.1 414,481 - -0.4 414,495 - -3.0 414,576 - HMPREF1078_RS14575 0.20 +0.2 414,576 - HMPREF1078_RS14575 0.20 -2.5 414,610 + HMPREF1078_RS14575 0.24 -0.9 414,610 + HMPREF1078_RS14575 0.24 -1.8 414,610 + HMPREF1078_RS14575 0.24 -0.5 414,610 + HMPREF1078_RS14575 0.24 -2.0 414,610 + HMPREF1078_RS14575 0.24 -1.1 414,610 + HMPREF1078_RS14575 0.24 +0.2 414,610 + HMPREF1078_RS14575 0.24 +0.1 414,610 + HMPREF1078_RS14575 0.24 -0.6 414,610 + HMPREF1078_RS14575 0.24 -0.5 414,611 - HMPREF1078_RS14575 0.24 -0.4 414,624 + HMPREF1078_RS14575 0.26 -1.5 414,624 + HMPREF1078_RS14575 0.26 +1.3 414,645 - HMPREF1078_RS14575 0.29 -1.4 414,806 - HMPREF1078_RS14575 0.50 -2.4 414,806 - HMPREF1078_RS14575 0.50 +2.0 414,806 - HMPREF1078_RS14575 0.50 -0.9 414,811 + HMPREF1078_RS14575 0.50 -2.7 414,811 + HMPREF1078_RS14575 0.50 -0.9 414,812 - HMPREF1078_RS14575 0.51 +0.6 414,903 + HMPREF1078_RS14575 0.62 -2.2
Or see this region's nucleotide sequence