Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03960 and MPMX19_03961 are separated by 20 nucleotides MPMX19_03961 and MPMX19_03962 are separated by 50 nucleotides MPMX19_03962 and MPMX19_03963 are separated by 20 nucleotides
MPMX19_03960: MPMX19_03960 - Beta-lactamase OXY-2, at 248,450 to 249,355
_03960
MPMX19_03961: MPMX19_03961 - hypothetical protein, at 249,376 to 249,612
_03961
MPMX19_03962: MPMX19_03962 - hypothetical protein, at 249,663 to 250,154
_03962
MPMX19_03963: MPMX19_03963 - hypothetical protein, at 250,175 to 252,220
_03963
Position (kb) 249
250 Strain fitness (log2 ratio) -2
-1
0
1 at 248.411 kb on + strand at 248.411 kb on + strand at 248.412 kb on - strand at 248.548 kb on + strand, within MPMX19_03960 at 248.549 kb on - strand, within MPMX19_03960 at 249.269 kb on + strand at 249.269 kb on + strand at 249.269 kb on + strand at 249.270 kb on - strand at 249.270 kb on - strand at 249.270 kb on - strand at 249.270 kb on - strand at 249.270 kb on - strand at 249.270 kb on - strand at 249.281 kb on - strand at 249.364 kb on + strand at 249.364 kb on + strand at 249.364 kb on + strand at 249.365 kb on - strand at 249.365 kb on - strand at 249.365 kb on - strand at 249.365 kb on - strand at 249.365 kb on - strand at 249.715 kb on + strand, within MPMX19_03962 at 249.716 kb on - strand, within MPMX19_03962 at 249.716 kb on - strand, within MPMX19_03962 at 249.835 kb on + strand, within MPMX19_03962 at 249.835 kb on + strand, within MPMX19_03962 at 249.835 kb on + strand, within MPMX19_03962 at 249.838 kb on + strand, within MPMX19_03962 at 249.838 kb on + strand, within MPMX19_03962 at 249.838 kb on + strand, within MPMX19_03962 at 249.838 kb on + strand, within MPMX19_03962 at 249.838 kb on + strand, within MPMX19_03962 at 249.838 kb on + strand, within MPMX19_03962 at 249.838 kb on + strand, within MPMX19_03962 at 249.839 kb on - strand, within MPMX19_03962 at 249.839 kb on - strand, within MPMX19_03962 at 249.839 kb on - strand, within MPMX19_03962 at 249.839 kb on - strand, within MPMX19_03962 at 249.839 kb on - strand, within MPMX19_03962 at 249.839 kb on - strand, within MPMX19_03962 at 249.868 kb on + strand, within MPMX19_03962 at 249.868 kb on + strand, within MPMX19_03962 at 249.868 kb on + strand, within MPMX19_03962 at 249.868 kb on + strand, within MPMX19_03962 at 249.868 kb on + strand, within MPMX19_03962 at 249.868 kb on + strand, within MPMX19_03962 at 249.868 kb on + strand, within MPMX19_03962 at 249.868 kb on + strand, within MPMX19_03962 at 249.869 kb on - strand, within MPMX19_03962 at 249.869 kb on - strand, within MPMX19_03962 at 249.869 kb on - strand, within MPMX19_03962 at 249.869 kb on - strand, within MPMX19_03962 at 249.869 kb on - strand, within MPMX19_03962 at 249.869 kb on - strand, within MPMX19_03962 at 249.869 kb on - strand, within MPMX19_03962 at 249.869 kb on - strand, within MPMX19_03962 at 249.869 kb on - strand, within MPMX19_03962 at 250.027 kb on + strand, within MPMX19_03962 at 250.027 kb on + strand, within MPMX19_03962 at 250.027 kb on + strand, within MPMX19_03962 at 250.027 kb on + strand, within MPMX19_03962 at 250.027 kb on + strand, within MPMX19_03962 at 250.027 kb on + strand, within MPMX19_03962 at 250.027 kb on + strand, within MPMX19_03962 at 250.027 kb on + strand, within MPMX19_03962 at 250.027 kb on + strand, within MPMX19_03962 at 250.027 kb on + strand, within MPMX19_03962 at 250.027 kb on + strand, within MPMX19_03962 at 250.028 kb on - strand, within MPMX19_03962 at 250.028 kb on - strand, within MPMX19_03962 at 250.028 kb on - strand, within MPMX19_03962 at 250.330 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 248,411 + -1.1 248,411 + +0.8 248,412 - -0.2 248,548 + MPMX19_03960 0.11 -1.9 248,549 - MPMX19_03960 0.11 -1.4 249,269 + -0.8 249,269 + -1.5 249,269 + -0.5 249,270 - -1.1 249,270 - -0.3 249,270 - -0.2 249,270 - -1.4 249,270 - +0.6 249,270 - -0.2 249,281 - -1.0 249,364 + -1.0 249,364 + -2.3 249,364 + +0.2 249,365 - -1.6 249,365 - -0.1 249,365 - +1.2 249,365 - +0.2 249,365 - -0.7 249,715 + MPMX19_03962 0.11 -0.4 249,716 - MPMX19_03962 0.11 -0.6 249,716 - MPMX19_03962 0.11 +0.3 249,835 + MPMX19_03962 0.35 -1.4 249,835 + MPMX19_03962 0.35 -0.8 249,835 + MPMX19_03962 0.35 -1.4 249,838 + MPMX19_03962 0.36 -0.1 249,838 + MPMX19_03962 0.36 -1.1 249,838 + MPMX19_03962 0.36 +1.3 249,838 + MPMX19_03962 0.36 -0.2 249,838 + MPMX19_03962 0.36 -1.4 249,838 + MPMX19_03962 0.36 -1.2 249,838 + MPMX19_03962 0.36 +0.4 249,839 - MPMX19_03962 0.36 -2.0 249,839 - MPMX19_03962 0.36 -1.8 249,839 - MPMX19_03962 0.36 -2.0 249,839 - MPMX19_03962 0.36 -2.3 249,839 - MPMX19_03962 0.36 -0.5 249,839 - MPMX19_03962 0.36 -0.1 249,868 + MPMX19_03962 0.42 -0.0 249,868 + MPMX19_03962 0.42 -1.0 249,868 + MPMX19_03962 0.42 -1.3 249,868 + MPMX19_03962 0.42 -0.3 249,868 + MPMX19_03962 0.42 -0.8 249,868 + MPMX19_03962 0.42 -0.0 249,868 + MPMX19_03962 0.42 -0.4 249,868 + MPMX19_03962 0.42 -0.2 249,869 - MPMX19_03962 0.42 -0.2 249,869 - MPMX19_03962 0.42 -2.6 249,869 - MPMX19_03962 0.42 -0.3 249,869 - MPMX19_03962 0.42 +1.0 249,869 - MPMX19_03962 0.42 -1.0 249,869 - MPMX19_03962 0.42 -0.8 249,869 - MPMX19_03962 0.42 +0.7 249,869 - MPMX19_03962 0.42 -1.0 249,869 - MPMX19_03962 0.42 -1.4 250,027 + MPMX19_03962 0.74 -0.2 250,027 + MPMX19_03962 0.74 +0.2 250,027 + MPMX19_03962 0.74 -1.1 250,027 + MPMX19_03962 0.74 -1.7 250,027 + MPMX19_03962 0.74 +0.2 250,027 + MPMX19_03962 0.74 +0.6 250,027 + MPMX19_03962 0.74 -1.4 250,027 + MPMX19_03962 0.74 +1.1 250,027 + MPMX19_03962 0.74 -0.4 250,027 + MPMX19_03962 0.74 +0.1 250,027 + MPMX19_03962 0.74 -0.9 250,028 - MPMX19_03962 0.74 -1.5 250,028 - MPMX19_03962 0.74 -0.5 250,028 - MPMX19_03962 0.74 -0.8 250,330 - -0.4
Or see this region's nucleotide sequence