Strain Fitness in Pseudomonas sp. DMC3 around GFF2308

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2306 and GFF2307 are separated by 177 nucleotidesGFF2307 and GFF2308 overlap by 4 nucleotidesGFF2308 and GFF2309 are separated by 80 nucleotidesGFF2309 and GFF2310 are separated by 197 nucleotides GFF2306 - PCP degradation transcriptional activation protein, at 82,643 to 83,578 GFF2306 GFF2307 - hypothetical protein, at 83,756 to 84,004 GFF2307 GFF2308 - putative transporter YycB, at 84,001 to 84,927 GFF2308 GFF2309 - hypothetical protein, at 85,008 to 85,133 GFF2309 GFF2310 - Phosphoethanolamine transferase EptA, at 85,331 to 86,980 GFF2310 Position (kb) 84 85Strain fitness (log2 ratio) -2 -1 0 1at 83.251 kb on - strand, within GFF2306at 83.251 kb on - strand, within GFF2306at 83.358 kb on + strand, within GFF2306at 83.358 kb on + strand, within GFF2306at 83.359 kb on - strand, within GFF2306at 83.377 kb on - strand, within GFF2306at 83.377 kb on - strand, within GFF2306at 83.451 kb on + strand, within GFF2306at 83.452 kb on - strand, within GFF2306at 83.452 kb on - strand, within GFF2306at 83.452 kb on - strand, within GFF2306at 83.514 kb on + strandat 83.514 kb on + strandat 83.528 kb on + strandat 83.528 kb on + strandat 83.529 kb on - strandat 83.529 kb on - strandat 83.529 kb on - strandat 83.566 kb on + strandat 83.566 kb on + strandat 83.567 kb on - strandat 83.567 kb on - strandat 83.630 kb on + strandat 83.670 kb on + strandat 83.671 kb on - strandat 83.708 kb on - strandat 83.922 kb on + strand, within GFF2307at 83.937 kb on - strand, within GFF2307at 83.937 kb on - strand, within GFF2307at 83.937 kb on - strand, within GFF2307at 84.047 kb on + strandat 84.245 kb on + strand, within GFF2308at 84.245 kb on + strand, within GFF2308at 84.245 kb on + strand, within GFF2308at 84.245 kb on + strand, within GFF2308at 84.248 kb on + strand, within GFF2308at 84.248 kb on + strand, within GFF2308at 84.278 kb on + strand, within GFF2308at 84.364 kb on + strand, within GFF2308at 84.518 kb on + strand, within GFF2308at 84.518 kb on + strand, within GFF2308at 84.533 kb on - strand, within GFF2308at 84.533 kb on - strand, within GFF2308at 84.533 kb on - strand, within GFF2308at 84.595 kb on + strand, within GFF2308at 84.595 kb on + strand, within GFF2308at 84.596 kb on - strand, within GFF2308at 84.811 kb on + strand, within GFF2308at 84.812 kb on - strand, within GFF2308at 84.812 kb on - strand, within GFF2308at 84.813 kb on + strand, within GFF2308at 84.813 kb on + strand, within GFF2308at 84.871 kb on - strandat 84.871 kb on - strandat 84.871 kb on - strandat 84.959 kb on + strandat 84.959 kb on + strandat 84.960 kb on - strandat 85.039 kb on + strand, within GFF2309at 85.039 kb on + strand, within GFF2309at 85.039 kb on + strand, within GFF2309at 85.040 kb on - strand, within GFF2309at 85.040 kb on - strand, within GFF2309at 85.040 kb on - strand, within GFF2309at 85.178 kb on - strandat 85.200 kb on - strandat 85.214 kb on - strandat 85.506 kb on + strand, within GFF2310at 85.506 kb on + strand, within GFF2310at 85.506 kb on + strand, within GFF2310at 85.506 kb on + strand, within GFF2310at 85.507 kb on - strand, within GFF2310at 85.507 kb on - strand, within GFF2310at 85.507 kb on - strand, within GFF2310at 85.540 kb on + strand, within GFF2310at 85.541 kb on - strand, within GFF2310at 85.541 kb on - strand, within GFF2310at 85.548 kb on + strand, within GFF2310at 85.838 kb on + strand, within GFF2310at 85.838 kb on + strand, within GFF2310at 85.838 kb on + strand, within GFF2310at 85.839 kb on - strand, within GFF2310at 85.839 kb on - strand, within GFF2310at 85.904 kb on + strand, within GFF2310at 85.904 kb on + strand, within GFF2310at 85.925 kb on + strand, within GFF2310at 85.925 kb on + strand, within GFF2310

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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83,251 - GFF2306 0.65 -0.7
83,251 - GFF2306 0.65 -1.0
83,358 + GFF2306 0.76 +0.3
83,358 + GFF2306 0.76 -0.3
83,359 - GFF2306 0.76 -0.9
83,377 - GFF2306 0.78 -0.4
83,377 - GFF2306 0.78 -0.1
83,451 + GFF2306 0.86 -0.7
83,452 - GFF2306 0.86 -1.6
83,452 - GFF2306 0.86 -0.1
83,452 - GFF2306 0.86 +0.4
83,514 + -0.5
83,514 + -0.8
83,528 + -0.3
83,528 + -0.7
83,529 - +0.4
83,529 - -0.7
83,529 - -1.2
83,566 + -1.1
83,566 + +0.0
83,567 - -1.7
83,567 - +0.6
83,630 + -0.9
83,670 + +0.4
83,671 - +0.0
83,708 - -1.1
83,922 + GFF2307 0.67 -0.4
83,937 - GFF2307 0.73 -0.5
83,937 - GFF2307 0.73 +1.0
83,937 - GFF2307 0.73 -0.9
84,047 + +0.9
84,245 + GFF2308 0.26 +0.5
84,245 + GFF2308 0.26 +1.0
84,245 + GFF2308 0.26 -0.5
84,245 + GFF2308 0.26 -0.0
84,248 + GFF2308 0.27 -0.4
84,248 + GFF2308 0.27 +0.1
84,278 + GFF2308 0.30 -0.5
84,364 + GFF2308 0.39 -0.1
84,518 + GFF2308 0.56 -0.7
84,518 + GFF2308 0.56 -0.2
84,533 - GFF2308 0.57 +1.1
84,533 - GFF2308 0.57 +1.3
84,533 - GFF2308 0.57 -1.7
84,595 + GFF2308 0.64 -1.6
84,595 + GFF2308 0.64 -0.4
84,596 - GFF2308 0.64 -0.3
84,811 + GFF2308 0.87 -0.2
84,812 - GFF2308 0.87 -1.0
84,812 - GFF2308 0.87 +0.1
84,813 + GFF2308 0.88 -0.4
84,813 + GFF2308 0.88 -1.3
84,871 - -0.7
84,871 - +0.3
84,871 - +0.1
84,959 + -1.3
84,959 + -0.2
84,960 - +0.4
85,039 + GFF2309 0.25 +0.3
85,039 + GFF2309 0.25 -0.2
85,039 + GFF2309 0.25 -2.3
85,040 - GFF2309 0.25 -0.4
85,040 - GFF2309 0.25 -0.8
85,040 - GFF2309 0.25 -0.9
85,178 - +0.5
85,200 - -0.9
85,214 - -0.1
85,506 + GFF2310 0.11 -0.7
85,506 + GFF2310 0.11 +0.6
85,506 + GFF2310 0.11 -0.9
85,506 + GFF2310 0.11 -0.9
85,507 - GFF2310 0.11 +0.2
85,507 - GFF2310 0.11 +0.2
85,507 - GFF2310 0.11 +0.7
85,540 + GFF2310 0.13 -0.9
85,541 - GFF2310 0.13 +0.0
85,541 - GFF2310 0.13 +0.4
85,548 + GFF2310 0.13 -0.1
85,838 + GFF2310 0.31 +0.1
85,838 + GFF2310 0.31 +1.3
85,838 + GFF2310 0.31 -1.2
85,839 - GFF2310 0.31 +0.2
85,839 - GFF2310 0.31 +0.0
85,904 + GFF2310 0.35 +0.5
85,904 + GFF2310 0.35 +0.3
85,925 + GFF2310 0.36 -0.4
85,925 + GFF2310 0.36 +0.9

Or see this region's nucleotide sequence