Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00821

Experiment: N4 MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00819 and OHPLBJKB_00820 are separated by 39 nucleotidesOHPLBJKB_00820 and OHPLBJKB_00821 are separated by 111 nucleotidesOHPLBJKB_00821 and OHPLBJKB_00822 are separated by 24 nucleotidesOHPLBJKB_00822 and OHPLBJKB_00823 are separated by 5 nucleotides OHPLBJKB_00819: OHPLBJKB_00819 - Inner membrane protein YgfX, at 842,565 to 842,972 _00819 OHPLBJKB_00820: OHPLBJKB_00820 - Flavodoxin 2, at 843,012 to 843,533 _00820 OHPLBJKB_00821: OHPLBJKB_00821 - Tyrosine recombinase XerD, at 843,645 to 844,541 _00821 OHPLBJKB_00822: OHPLBJKB_00822 - Thiol:disulfide interchange protein DsbC, at 844,566 to 845,276 _00822 OHPLBJKB_00823: OHPLBJKB_00823 - Single-stranded-DNA-specific exonuclease RecJ, at 845,282 to 847,015 _00823 Position (kb) 843 844 845Strain fitness (log2 ratio) -2 -1 0 1 2at 842.654 kb on - strand, within OHPLBJKB_00819at 842.654 kb on - strand, within OHPLBJKB_00819at 842.676 kb on + strand, within OHPLBJKB_00819at 842.698 kb on + strand, within OHPLBJKB_00819at 842.698 kb on + strand, within OHPLBJKB_00819at 842.699 kb on - strand, within OHPLBJKB_00819at 842.699 kb on - strand, within OHPLBJKB_00819at 842.744 kb on + strand, within OHPLBJKB_00819at 842.744 kb on + strand, within OHPLBJKB_00819at 842.838 kb on - strand, within OHPLBJKB_00819at 842.838 kb on - strand, within OHPLBJKB_00819at 842.860 kb on + strand, within OHPLBJKB_00819at 842.860 kb on + strand, within OHPLBJKB_00819at 842.890 kb on + strand, within OHPLBJKB_00819at 842.890 kb on + strand, within OHPLBJKB_00819at 842.890 kb on + strand, within OHPLBJKB_00819at 842.891 kb on - strand, within OHPLBJKB_00819at 842.989 kb on + strandat 842.989 kb on + strandat 842.990 kb on - strandat 842.990 kb on - strandat 842.990 kb on - strandat 843.019 kb on + strandat 843.085 kb on + strand, within OHPLBJKB_00820at 843.085 kb on + strand, within OHPLBJKB_00820at 843.086 kb on - strand, within OHPLBJKB_00820at 843.086 kb on - strand, within OHPLBJKB_00820at 843.093 kb on - strand, within OHPLBJKB_00820at 843.163 kb on + strand, within OHPLBJKB_00820at 843.228 kb on - strand, within OHPLBJKB_00820at 843.280 kb on + strand, within OHPLBJKB_00820at 843.296 kb on + strand, within OHPLBJKB_00820at 843.397 kb on + strand, within OHPLBJKB_00820at 843.398 kb on - strand, within OHPLBJKB_00820at 843.398 kb on - strand, within OHPLBJKB_00820at 843.398 kb on - strand, within OHPLBJKB_00820at 843.408 kb on + strand, within OHPLBJKB_00820at 843.408 kb on + strand, within OHPLBJKB_00820at 843.434 kb on + strand, within OHPLBJKB_00820at 843.434 kb on + strand, within OHPLBJKB_00820at 843.435 kb on - strand, within OHPLBJKB_00820at 843.438 kb on + strand, within OHPLBJKB_00820at 843.438 kb on + strand, within OHPLBJKB_00820at 843.438 kb on + strand, within OHPLBJKB_00820at 843.438 kb on + strand, within OHPLBJKB_00820at 843.438 kb on + strand, within OHPLBJKB_00820at 843.438 kb on + strand, within OHPLBJKB_00820at 843.438 kb on + strand, within OHPLBJKB_00820at 843.438 kb on + strand, within OHPLBJKB_00820at 843.438 kb on + strand, within OHPLBJKB_00820at 843.438 kb on + strand, within OHPLBJKB_00820at 843.439 kb on - strand, within OHPLBJKB_00820at 843.439 kb on - strand, within OHPLBJKB_00820at 843.439 kb on - strand, within OHPLBJKB_00820at 843.439 kb on - strand, within OHPLBJKB_00820at 843.439 kb on - strand, within OHPLBJKB_00820at 843.439 kb on - strand, within OHPLBJKB_00820at 843.496 kb on + strandat 843.496 kb on + strandat 843.496 kb on + strandat 843.497 kb on - strandat 843.533 kb on + strandat 843.538 kb on + strandat 843.538 kb on + strandat 843.538 kb on + strandat 843.539 kb on - strandat 843.539 kb on - strandat 843.539 kb on - strandat 843.539 kb on - strandat 843.539 kb on - strandat 843.539 kb on - strandat 843.539 kb on - strandat 843.539 kb on - strandat 843.571 kb on + strandat 843.571 kb on + strandat 843.572 kb on - strandat 843.572 kb on - strandat 843.572 kb on - strandat 843.572 kb on - strandat 843.576 kb on + strandat 843.576 kb on + strandat 843.576 kb on + strandat 843.604 kb on + strandat 843.605 kb on - strandat 843.611 kb on + strandat 843.846 kb on - strand, within OHPLBJKB_00821at 843.982 kb on + strand, within OHPLBJKB_00821at 844.006 kb on + strand, within OHPLBJKB_00821at 844.006 kb on + strand, within OHPLBJKB_00821at 844.042 kb on + strand, within OHPLBJKB_00821at 844.042 kb on + strand, within OHPLBJKB_00821at 844.071 kb on + strand, within OHPLBJKB_00821at 844.071 kb on + strand, within OHPLBJKB_00821at 844.072 kb on - strand, within OHPLBJKB_00821at 844.072 kb on - strand, within OHPLBJKB_00821at 844.072 kb on - strand, within OHPLBJKB_00821at 844.072 kb on - strand, within OHPLBJKB_00821at 844.121 kb on + strand, within OHPLBJKB_00821at 844.219 kb on - strand, within OHPLBJKB_00821at 844.325 kb on + strand, within OHPLBJKB_00821at 844.326 kb on - strand, within OHPLBJKB_00821at 844.332 kb on + strand, within OHPLBJKB_00821at 844.405 kb on + strand, within OHPLBJKB_00821at 844.445 kb on - strand, within OHPLBJKB_00821at 844.481 kb on + strandat 844.482 kb on - strandat 844.565 kb on + strandat 844.565 kb on + strandat 844.566 kb on - strandat 844.581 kb on - strandat 844.581 kb on - strandat 844.581 kb on - strandat 844.589 kb on + strandat 844.589 kb on + strandat 844.590 kb on - strandat 844.590 kb on - strandat 844.590 kb on - strandat 844.590 kb on - strandat 844.680 kb on - strand, within OHPLBJKB_00822at 844.722 kb on - strand, within OHPLBJKB_00822at 844.737 kb on + strand, within OHPLBJKB_00822at 844.737 kb on + strand, within OHPLBJKB_00822at 844.737 kb on + strand, within OHPLBJKB_00822at 844.737 kb on + strand, within OHPLBJKB_00822at 844.737 kb on + strand, within OHPLBJKB_00822at 844.737 kb on + strand, within OHPLBJKB_00822at 844.737 kb on + strand, within OHPLBJKB_00822at 844.737 kb on + strand, within OHPLBJKB_00822at 844.738 kb on - strand, within OHPLBJKB_00822at 844.738 kb on - strand, within OHPLBJKB_00822at 844.738 kb on - strand, within OHPLBJKB_00822at 844.738 kb on - strand, within OHPLBJKB_00822at 844.738 kb on - strand, within OHPLBJKB_00822at 844.738 kb on - strand, within OHPLBJKB_00822at 844.738 kb on - strand, within OHPLBJKB_00822at 844.738 kb on - strand, within OHPLBJKB_00822at 844.755 kb on - strand, within OHPLBJKB_00822at 844.760 kb on + strand, within OHPLBJKB_00822at 844.760 kb on + strand, within OHPLBJKB_00822at 844.760 kb on + strand, within OHPLBJKB_00822at 844.760 kb on + strand, within OHPLBJKB_00822at 844.761 kb on - strand, within OHPLBJKB_00822at 844.761 kb on - strand, within OHPLBJKB_00822at 844.761 kb on - strand, within OHPLBJKB_00822at 844.779 kb on + strand, within OHPLBJKB_00822at 844.779 kb on + strand, within OHPLBJKB_00822at 844.780 kb on - strand, within OHPLBJKB_00822at 844.780 kb on - strand, within OHPLBJKB_00822at 844.780 kb on - strand, within OHPLBJKB_00822at 844.780 kb on - strand, within OHPLBJKB_00822at 844.780 kb on - strand, within OHPLBJKB_00822at 844.828 kb on + strand, within OHPLBJKB_00822at 844.829 kb on - strand, within OHPLBJKB_00822at 844.868 kb on + strand, within OHPLBJKB_00822at 844.868 kb on + strand, within OHPLBJKB_00822at 844.910 kb on + strand, within OHPLBJKB_00822at 844.911 kb on - strand, within OHPLBJKB_00822at 844.913 kb on + strand, within OHPLBJKB_00822at 844.914 kb on - strand, within OHPLBJKB_00822at 844.914 kb on - strand, within OHPLBJKB_00822at 844.956 kb on + strand, within OHPLBJKB_00822at 844.956 kb on + strand, within OHPLBJKB_00822at 844.956 kb on + strand, within OHPLBJKB_00822at 844.957 kb on - strand, within OHPLBJKB_00822at 844.957 kb on - strand, within OHPLBJKB_00822at 844.983 kb on + strand, within OHPLBJKB_00822at 845.039 kb on + strand, within OHPLBJKB_00822at 845.136 kb on + strand, within OHPLBJKB_00822at 845.136 kb on + strand, within OHPLBJKB_00822at 845.140 kb on + strand, within OHPLBJKB_00822at 845.141 kb on - strand, within OHPLBJKB_00822at 845.141 kb on - strand, within OHPLBJKB_00822at 845.271 kb on - strandat 845.274 kb on + strandat 845.275 kb on - strandat 845.295 kb on + strandat 845.295 kb on + strandat 845.295 kb on + strandat 845.295 kb on + strandat 845.296 kb on - strandat 845.369 kb on + strandat 845.422 kb on + strandat 845.422 kb on + strandat 845.422 kb on + strandat 845.422 kb on + strandat 845.423 kb on - strandat 845.423 kb on - strandat 845.423 kb on - strandat 845.423 kb on - strandat 845.423 kb on - strandat 845.474 kb on + strand, within OHPLBJKB_00823at 845.474 kb on + strand, within OHPLBJKB_00823at 845.474 kb on + strand, within OHPLBJKB_00823at 845.474 kb on + strand, within OHPLBJKB_00823at 845.474 kb on + strand, within OHPLBJKB_00823at 845.474 kb on + strand, within OHPLBJKB_00823at 845.475 kb on - strand, within OHPLBJKB_00823at 845.475 kb on - strand, within OHPLBJKB_00823at 845.475 kb on - strand, within OHPLBJKB_00823

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Per-strain Table

Position Strand Gene LocusTag Fraction N4 MOI10
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842,654 - OHPLBJKB_00819 0.22 +0.6
842,654 - OHPLBJKB_00819 0.22 -0.3
842,676 + OHPLBJKB_00819 0.27 -0.7
842,698 + OHPLBJKB_00819 0.33 +0.3
842,698 + OHPLBJKB_00819 0.33 -0.4
842,699 - OHPLBJKB_00819 0.33 -0.1
842,699 - OHPLBJKB_00819 0.33 -0.1
842,744 + OHPLBJKB_00819 0.44 -0.3
842,744 + OHPLBJKB_00819 0.44 -0.9
842,838 - OHPLBJKB_00819 0.67 +1.8
842,838 - OHPLBJKB_00819 0.67 +0.4
842,860 + OHPLBJKB_00819 0.72 +0.2
842,860 + OHPLBJKB_00819 0.72 -0.5
842,890 + OHPLBJKB_00819 0.80 -0.5
842,890 + OHPLBJKB_00819 0.80 -0.1
842,890 + OHPLBJKB_00819 0.80 -0.2
842,891 - OHPLBJKB_00819 0.80 +0.3
842,989 + +0.4
842,989 + -1.2
842,990 - +0.6
842,990 - -0.0
842,990 - -1.5
843,019 + -0.2
843,085 + OHPLBJKB_00820 0.14 -0.3
843,085 + OHPLBJKB_00820 0.14 -2.5
843,086 - OHPLBJKB_00820 0.14 +0.2
843,086 - OHPLBJKB_00820 0.14 -0.0
843,093 - OHPLBJKB_00820 0.16 -0.1
843,163 + OHPLBJKB_00820 0.29 -0.0
843,228 - OHPLBJKB_00820 0.41 +0.3
843,280 + OHPLBJKB_00820 0.51 -0.0
843,296 + OHPLBJKB_00820 0.54 +0.3
843,397 + OHPLBJKB_00820 0.74 -0.2
843,398 - OHPLBJKB_00820 0.74 -1.0
843,398 - OHPLBJKB_00820 0.74 -0.0
843,398 - OHPLBJKB_00820 0.74 +0.9
843,408 + OHPLBJKB_00820 0.76 +0.9
843,408 + OHPLBJKB_00820 0.76 +2.0
843,434 + OHPLBJKB_00820 0.81 -0.5
843,434 + OHPLBJKB_00820 0.81 -0.4
843,435 - OHPLBJKB_00820 0.81 -0.3
843,438 + OHPLBJKB_00820 0.82 +1.4
843,438 + OHPLBJKB_00820 0.82 +0.1
843,438 + OHPLBJKB_00820 0.82 +0.4
843,438 + OHPLBJKB_00820 0.82 -1.0
843,438 + OHPLBJKB_00820 0.82 +0.6
843,438 + OHPLBJKB_00820 0.82 +0.6
843,438 + OHPLBJKB_00820 0.82 -0.3
843,438 + OHPLBJKB_00820 0.82 -0.5
843,438 + OHPLBJKB_00820 0.82 +0.2
843,438 + OHPLBJKB_00820 0.82 +1.0
843,439 - OHPLBJKB_00820 0.82 +0.1
843,439 - OHPLBJKB_00820 0.82 -1.5
843,439 - OHPLBJKB_00820 0.82 +0.6
843,439 - OHPLBJKB_00820 0.82 +0.2
843,439 - OHPLBJKB_00820 0.82 +0.7
843,439 - OHPLBJKB_00820 0.82 +0.4
843,496 + -0.5
843,496 + +1.4
843,496 + +0.2
843,497 - +0.1
843,533 + +0.2
843,538 + +0.3
843,538 + -0.6
843,538 + +0.1
843,539 - -0.4
843,539 - +0.3
843,539 - -0.4
843,539 - +0.4
843,539 - -0.0
843,539 - -0.5
843,539 - -0.3
843,539 - -1.3
843,571 + -0.5
843,571 + +0.6
843,572 - +2.0
843,572 - +0.8
843,572 - -0.8
843,572 - +1.0
843,576 + +0.7
843,576 + -0.4
843,576 + +0.7
843,604 + -0.6
843,605 - -0.1
843,611 + +0.3
843,846 - OHPLBJKB_00821 0.22 -1.3
843,982 + OHPLBJKB_00821 0.38 -0.0
844,006 + OHPLBJKB_00821 0.40 -0.0
844,006 + OHPLBJKB_00821 0.40 -1.2
844,042 + OHPLBJKB_00821 0.44 -0.1
844,042 + OHPLBJKB_00821 0.44 +0.4
844,071 + OHPLBJKB_00821 0.47 -0.8
844,071 + OHPLBJKB_00821 0.47 -1.2
844,072 - OHPLBJKB_00821 0.48 -1.0
844,072 - OHPLBJKB_00821 0.48 -0.5
844,072 - OHPLBJKB_00821 0.48 -1.0
844,072 - OHPLBJKB_00821 0.48 -1.3
844,121 + OHPLBJKB_00821 0.53 -0.3
844,219 - OHPLBJKB_00821 0.64 -0.3
844,325 + OHPLBJKB_00821 0.76 -1.5
844,326 - OHPLBJKB_00821 0.76 -2.5
844,332 + OHPLBJKB_00821 0.77 -0.0
844,405 + OHPLBJKB_00821 0.85 -1.0
844,445 - OHPLBJKB_00821 0.89 +0.7
844,481 + -1.0
844,482 - +0.4
844,565 + -0.6
844,565 + +0.2
844,566 - -0.4
844,581 - -1.1
844,581 - +1.4
844,581 - -0.4
844,589 + -1.3
844,589 + +0.6
844,590 - +0.4
844,590 - -0.1
844,590 - -0.8
844,590 - -0.1
844,680 - OHPLBJKB_00822 0.16 -0.6
844,722 - OHPLBJKB_00822 0.22 +0.6
844,737 + OHPLBJKB_00822 0.24 +0.4
844,737 + OHPLBJKB_00822 0.24 +0.2
844,737 + OHPLBJKB_00822 0.24 -0.3
844,737 + OHPLBJKB_00822 0.24 -0.2
844,737 + OHPLBJKB_00822 0.24 +0.2
844,737 + OHPLBJKB_00822 0.24 +0.4
844,737 + OHPLBJKB_00822 0.24 +0.1
844,737 + OHPLBJKB_00822 0.24 +0.4
844,738 - OHPLBJKB_00822 0.24 -0.6
844,738 - OHPLBJKB_00822 0.24 +0.3
844,738 - OHPLBJKB_00822 0.24 -1.0
844,738 - OHPLBJKB_00822 0.24 +0.7
844,738 - OHPLBJKB_00822 0.24 -0.9
844,738 - OHPLBJKB_00822 0.24 +0.2
844,738 - OHPLBJKB_00822 0.24 -0.2
844,738 - OHPLBJKB_00822 0.24 -2.3
844,755 - OHPLBJKB_00822 0.27 +0.1
844,760 + OHPLBJKB_00822 0.27 -0.1
844,760 + OHPLBJKB_00822 0.27 +0.3
844,760 + OHPLBJKB_00822 0.27 -0.3
844,760 + OHPLBJKB_00822 0.27 -0.3
844,761 - OHPLBJKB_00822 0.27 -1.1
844,761 - OHPLBJKB_00822 0.27 +0.2
844,761 - OHPLBJKB_00822 0.27 +0.1
844,779 + OHPLBJKB_00822 0.30 +0.1
844,779 + OHPLBJKB_00822 0.30 -0.1
844,780 - OHPLBJKB_00822 0.30 -0.0
844,780 - OHPLBJKB_00822 0.30 -0.4
844,780 - OHPLBJKB_00822 0.30 +0.2
844,780 - OHPLBJKB_00822 0.30 -1.3
844,780 - OHPLBJKB_00822 0.30 +0.4
844,828 + OHPLBJKB_00822 0.37 +0.1
844,829 - OHPLBJKB_00822 0.37 -0.4
844,868 + OHPLBJKB_00822 0.42 +0.9
844,868 + OHPLBJKB_00822 0.42 +0.8
844,910 + OHPLBJKB_00822 0.48 +0.3
844,911 - OHPLBJKB_00822 0.49 +0.7
844,913 + OHPLBJKB_00822 0.49 +0.3
844,914 - OHPLBJKB_00822 0.49 +0.2
844,914 - OHPLBJKB_00822 0.49 +0.7
844,956 + OHPLBJKB_00822 0.55 -0.3
844,956 + OHPLBJKB_00822 0.55 -0.8
844,956 + OHPLBJKB_00822 0.55 -0.7
844,957 - OHPLBJKB_00822 0.55 -0.3
844,957 - OHPLBJKB_00822 0.55 -0.0
844,983 + OHPLBJKB_00822 0.59 -0.9
845,039 + OHPLBJKB_00822 0.67 -0.1
845,136 + OHPLBJKB_00822 0.80 -0.3
845,136 + OHPLBJKB_00822 0.80 -1.0
845,140 + OHPLBJKB_00822 0.81 -0.3
845,141 - OHPLBJKB_00822 0.81 -0.5
845,141 - OHPLBJKB_00822 0.81 +1.1
845,271 - -1.4
845,274 + -0.7
845,275 - -0.0
845,295 + -0.2
845,295 + -0.0
845,295 + +0.7
845,295 + +0.6
845,296 - -0.3
845,369 + -0.3
845,422 + -1.1
845,422 + -0.3
845,422 + -0.5
845,422 + -0.5
845,423 - +0.6
845,423 - +0.3
845,423 - -0.2
845,423 - +0.7
845,423 - -0.9
845,474 + OHPLBJKB_00823 0.11 +1.1
845,474 + OHPLBJKB_00823 0.11 +0.1
845,474 + OHPLBJKB_00823 0.11 -2.0
845,474 + OHPLBJKB_00823 0.11 +0.2
845,474 + OHPLBJKB_00823 0.11 -1.2
845,474 + OHPLBJKB_00823 0.11 +1.3
845,475 - OHPLBJKB_00823 0.11 +0.2
845,475 - OHPLBJKB_00823 0.11 +0.3
845,475 - OHPLBJKB_00823 0.11 +0.6

Or see this region's nucleotide sequence