Experiment: N4 MOI10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00338 and OHPLBJKB_00339 are separated by 270 nucleotides OHPLBJKB_00339 and OHPLBJKB_00340 are separated by 104 nucleotides OHPLBJKB_00340 and OHPLBJKB_00341 overlap by 11 nucleotides OHPLBJKB_00341 and OHPLBJKB_00342 are separated by 31 nucleotides
OHPLBJKB_00338: OHPLBJKB_00338 - Protein TsgA, at 372,809 to 373,990
_00338
OHPLBJKB_00339: OHPLBJKB_00339 - Peptidyl-prolyl cis-trans isomerase A, at 374,261 to 374,833
_00339
OHPLBJKB_00340: OHPLBJKB_00340 - putative protein YhfG, at 374,938 to 375,105
_00340
OHPLBJKB_00341: OHPLBJKB_00341 - putative adenosine monophosphate-protein transferase fic, at 375,095 to 375,697
_00341
OHPLBJKB_00342: OHPLBJKB_00342 - Aminodeoxychorismate synthase component 2, at 375,729 to 376,292
_00342
Position (kb) 374
375 Strain fitness (log2 ratio) -2
-1
0
1
2 at 373.296 kb on + strand, within OHPLBJKB_00338 at 373.297 kb on - strand, within OHPLBJKB_00338 at 373.297 kb on - strand, within OHPLBJKB_00338 at 373.315 kb on + strand, within OHPLBJKB_00338 at 373.316 kb on - strand, within OHPLBJKB_00338 at 373.316 kb on - strand, within OHPLBJKB_00338 at 373.322 kb on + strand, within OHPLBJKB_00338 at 373.323 kb on - strand, within OHPLBJKB_00338 at 373.338 kb on + strand, within OHPLBJKB_00338 at 373.338 kb on + strand, within OHPLBJKB_00338 at 373.338 kb on + strand, within OHPLBJKB_00338 at 373.339 kb on - strand, within OHPLBJKB_00338 at 373.339 kb on - strand, within OHPLBJKB_00338 at 373.339 kb on - strand, within OHPLBJKB_00338 at 373.339 kb on - strand, within OHPLBJKB_00338 at 373.459 kb on + strand, within OHPLBJKB_00338 at 373.473 kb on + strand, within OHPLBJKB_00338 at 373.473 kb on + strand, within OHPLBJKB_00338 at 373.473 kb on + strand, within OHPLBJKB_00338 at 373.473 kb on + strand, within OHPLBJKB_00338 at 373.473 kb on + strand, within OHPLBJKB_00338 at 373.474 kb on - strand, within OHPLBJKB_00338 at 373.474 kb on - strand, within OHPLBJKB_00338 at 373.474 kb on - strand, within OHPLBJKB_00338 at 373.474 kb on - strand, within OHPLBJKB_00338 at 373.527 kb on - strand, within OHPLBJKB_00338 at 373.583 kb on - strand, within OHPLBJKB_00338 at 373.617 kb on + strand, within OHPLBJKB_00338 at 373.617 kb on + strand, within OHPLBJKB_00338 at 373.617 kb on + strand, within OHPLBJKB_00338 at 373.617 kb on + strand, within OHPLBJKB_00338 at 373.618 kb on - strand, within OHPLBJKB_00338 at 373.618 kb on - strand, within OHPLBJKB_00338 at 373.618 kb on - strand, within OHPLBJKB_00338 at 373.618 kb on - strand, within OHPLBJKB_00338 at 373.618 kb on - strand, within OHPLBJKB_00338 at 373.629 kb on - strand, within OHPLBJKB_00338 at 373.639 kb on + strand, within OHPLBJKB_00338 at 373.639 kb on + strand, within OHPLBJKB_00338 at 373.651 kb on + strand, within OHPLBJKB_00338 at 373.651 kb on + strand, within OHPLBJKB_00338 at 373.651 kb on + strand, within OHPLBJKB_00338 at 373.651 kb on + strand, within OHPLBJKB_00338 at 373.651 kb on + strand, within OHPLBJKB_00338 at 373.651 kb on + strand, within OHPLBJKB_00338 at 373.651 kb on + strand, within OHPLBJKB_00338 at 373.652 kb on - strand, within OHPLBJKB_00338 at 373.652 kb on - strand, within OHPLBJKB_00338 at 373.652 kb on - strand, within OHPLBJKB_00338 at 373.652 kb on - strand, within OHPLBJKB_00338 at 373.652 kb on - strand, within OHPLBJKB_00338 at 373.652 kb on - strand, within OHPLBJKB_00338 at 373.652 kb on - strand, within OHPLBJKB_00338 at 373.654 kb on + strand, within OHPLBJKB_00338 at 373.654 kb on + strand, within OHPLBJKB_00338 at 373.654 kb on + strand, within OHPLBJKB_00338 at 373.654 kb on + strand, within OHPLBJKB_00338 at 373.654 kb on + strand, within OHPLBJKB_00338 at 373.655 kb on - strand, within OHPLBJKB_00338 at 373.655 kb on - strand, within OHPLBJKB_00338 at 373.655 kb on - strand, within OHPLBJKB_00338 at 373.655 kb on - strand, within OHPLBJKB_00338 at 373.763 kb on + strand, within OHPLBJKB_00338 at 373.764 kb on - strand, within OHPLBJKB_00338 at 373.821 kb on - strand, within OHPLBJKB_00338 at 373.821 kb on - strand, within OHPLBJKB_00338 at 373.954 kb on + strand at 373.955 kb on - strand at 373.955 kb on - strand at 374.050 kb on + strand at 374.050 kb on + strand at 374.097 kb on - strand at 374.151 kb on + strand at 374.151 kb on + strand at 374.152 kb on - strand at 374.152 kb on - strand at 374.152 kb on - strand at 374.155 kb on + strand at 374.155 kb on + strand at 374.155 kb on + strand at 374.155 kb on + strand at 374.155 kb on + strand at 374.155 kb on + strand at 374.155 kb on + strand at 374.155 kb on + strand at 374.155 kb on + strand at 374.156 kb on - strand at 374.156 kb on - strand at 374.156 kb on - strand at 374.156 kb on - strand at 374.156 kb on - strand at 374.156 kb on - strand at 374.157 kb on + strand at 374.157 kb on + strand at 374.157 kb on + strand at 374.158 kb on - strand at 374.158 kb on - strand at 374.158 kb on - strand at 374.158 kb on - strand at 374.166 kb on + strand at 374.166 kb on + strand at 374.167 kb on - strand at 374.170 kb on + strand at 374.207 kb on + strand at 374.211 kb on + strand at 374.211 kb on + strand at 374.211 kb on + strand at 374.212 kb on - strand at 374.212 kb on - strand at 374.352 kb on + strand, within OHPLBJKB_00339 at 374.352 kb on + strand, within OHPLBJKB_00339 at 374.352 kb on + strand, within OHPLBJKB_00339 at 374.353 kb on - strand, within OHPLBJKB_00339 at 374.353 kb on - strand, within OHPLBJKB_00339 at 374.454 kb on - strand, within OHPLBJKB_00339 at 374.464 kb on + strand, within OHPLBJKB_00339 at 374.802 kb on + strand at 374.802 kb on + strand at 374.803 kb on - strand at 374.803 kb on - strand at 374.806 kb on + strand at 374.901 kb on + strand at 374.901 kb on + strand at 374.901 kb on + strand at 374.902 kb on - strand at 374.902 kb on - strand at 374.902 kb on - strand at 374.902 kb on - strand at 374.902 kb on - strand at 374.989 kb on - strand, within OHPLBJKB_00340 at 374.994 kb on + strand, within OHPLBJKB_00340 at 375.095 kb on - strand at 375.095 kb on - strand at 375.104 kb on - strand at 375.134 kb on + strand at 375.293 kb on + strand, within OHPLBJKB_00341 at 375.302 kb on - strand, within OHPLBJKB_00341 at 375.342 kb on - strand, within OHPLBJKB_00341 at 375.374 kb on + strand, within OHPLBJKB_00341 at 375.374 kb on + strand, within OHPLBJKB_00341 at 375.374 kb on + strand, within OHPLBJKB_00341 at 375.374 kb on + strand, within OHPLBJKB_00341 at 375.375 kb on - strand, within OHPLBJKB_00341 at 375.375 kb on - strand, within OHPLBJKB_00341 at 375.375 kb on - strand, within OHPLBJKB_00341 at 375.375 kb on - strand, within OHPLBJKB_00341 at 375.473 kb on + strand, within OHPLBJKB_00341 at 375.474 kb on - strand, within OHPLBJKB_00341 at 375.476 kb on + strand, within OHPLBJKB_00341 at 375.657 kb on + strand at 375.657 kb on + strand at 375.657 kb on + strand at 375.657 kb on + strand at 375.657 kb on + strand at 375.658 kb on - strand at 375.658 kb on - strand at 375.661 kb on + strand at 375.661 kb on + strand at 375.662 kb on - strand at 375.662 kb on - strand at 375.673 kb on - strand at 375.696 kb on - strand at 375.701 kb on - strand at 375.701 kb on - strand at 375.701 kb on - strand at 375.741 kb on - strand at 375.741 kb on - strand at 375.742 kb on + strand at 375.742 kb on + strand at 375.742 kb on + strand at 375.742 kb on + strand at 375.742 kb on + strand at 375.742 kb on + strand at 375.742 kb on + strand at 375.742 kb on + strand at 375.742 kb on + strand at 375.742 kb on + strand at 375.743 kb on - strand at 375.743 kb on - strand at 375.746 kb on + strand at 375.746 kb on + strand at 375.747 kb on - strand at 375.750 kb on + strand at 375.750 kb on + strand at 375.750 kb on + strand at 375.751 kb on - strand at 375.751 kb on - strand at 375.812 kb on + strand, within OHPLBJKB_00342
Per-strain Table
Position Strand Gene LocusTag Fraction N4 MOI10 remove 373,296 + OHPLBJKB_00338 0.41 +0.1 373,297 - OHPLBJKB_00338 0.41 -1.8 373,297 - OHPLBJKB_00338 0.41 -0.4 373,315 + OHPLBJKB_00338 0.43 -1.1 373,316 - OHPLBJKB_00338 0.43 -0.1 373,316 - OHPLBJKB_00338 0.43 -0.1 373,322 + OHPLBJKB_00338 0.43 -0.3 373,323 - OHPLBJKB_00338 0.43 +0.1 373,338 + OHPLBJKB_00338 0.45 +0.8 373,338 + OHPLBJKB_00338 0.45 +0.2 373,338 + OHPLBJKB_00338 0.45 +0.4 373,339 - OHPLBJKB_00338 0.45 -0.3 373,339 - OHPLBJKB_00338 0.45 +0.8 373,339 - OHPLBJKB_00338 0.45 -0.7 373,339 - OHPLBJKB_00338 0.45 -0.7 373,459 + OHPLBJKB_00338 0.55 +0.9 373,473 + OHPLBJKB_00338 0.56 +0.7 373,473 + OHPLBJKB_00338 0.56 -0.0 373,473 + OHPLBJKB_00338 0.56 -0.3 373,473 + OHPLBJKB_00338 0.56 -0.0 373,473 + OHPLBJKB_00338 0.56 +0.4 373,474 - OHPLBJKB_00338 0.56 +1.3 373,474 - OHPLBJKB_00338 0.56 -0.4 373,474 - OHPLBJKB_00338 0.56 -0.2 373,474 - OHPLBJKB_00338 0.56 -0.2 373,527 - OHPLBJKB_00338 0.61 -0.4 373,583 - OHPLBJKB_00338 0.65 +0.0 373,617 + OHPLBJKB_00338 0.68 +1.1 373,617 + OHPLBJKB_00338 0.68 +0.4 373,617 + OHPLBJKB_00338 0.68 +2.1 373,617 + OHPLBJKB_00338 0.68 +0.2 373,618 - OHPLBJKB_00338 0.68 -0.7 373,618 - OHPLBJKB_00338 0.68 +0.8 373,618 - OHPLBJKB_00338 0.68 -1.5 373,618 - OHPLBJKB_00338 0.68 -0.1 373,618 - OHPLBJKB_00338 0.68 +0.3 373,629 - OHPLBJKB_00338 0.69 -0.2 373,639 + OHPLBJKB_00338 0.70 +0.4 373,639 + OHPLBJKB_00338 0.70 -0.6 373,651 + OHPLBJKB_00338 0.71 -0.6 373,651 + OHPLBJKB_00338 0.71 -0.2 373,651 + OHPLBJKB_00338 0.71 -0.1 373,651 + OHPLBJKB_00338 0.71 -1.0 373,651 + OHPLBJKB_00338 0.71 -0.0 373,651 + OHPLBJKB_00338 0.71 +0.1 373,651 + OHPLBJKB_00338 0.71 +0.3 373,652 - OHPLBJKB_00338 0.71 +0.7 373,652 - OHPLBJKB_00338 0.71 +0.4 373,652 - OHPLBJKB_00338 0.71 -0.7 373,652 - OHPLBJKB_00338 0.71 +0.2 373,652 - OHPLBJKB_00338 0.71 -0.3 373,652 - OHPLBJKB_00338 0.71 -0.3 373,652 - OHPLBJKB_00338 0.71 +0.1 373,654 + OHPLBJKB_00338 0.71 -0.3 373,654 + OHPLBJKB_00338 0.71 +0.4 373,654 + OHPLBJKB_00338 0.71 +0.2 373,654 + OHPLBJKB_00338 0.71 +0.9 373,654 + OHPLBJKB_00338 0.71 +0.0 373,655 - OHPLBJKB_00338 0.72 -0.3 373,655 - OHPLBJKB_00338 0.72 +0.7 373,655 - OHPLBJKB_00338 0.72 -0.6 373,655 - OHPLBJKB_00338 0.72 +0.1 373,763 + OHPLBJKB_00338 0.81 -0.1 373,764 - OHPLBJKB_00338 0.81 -0.2 373,821 - OHPLBJKB_00338 0.86 +0.1 373,821 - OHPLBJKB_00338 0.86 -0.6 373,954 + -0.0 373,955 - -0.9 373,955 - +0.0 374,050 + +0.3 374,050 + +1.3 374,097 - +0.6 374,151 + -0.6 374,151 + -0.0 374,152 - +0.3 374,152 - -1.5 374,152 - -0.2 374,155 + -1.7 374,155 + -0.9 374,155 + +0.5 374,155 + -0.2 374,155 + -0.0 374,155 + -0.2 374,155 + +0.4 374,155 + +0.5 374,155 + -0.4 374,156 - -0.2 374,156 - -1.4 374,156 - +0.1 374,156 - -0.3 374,156 - +0.1 374,156 - -0.7 374,157 + +2.3 374,157 + +0.4 374,157 + +0.2 374,158 - +0.3 374,158 - +0.6 374,158 - +0.2 374,158 - -0.8 374,166 + +0.3 374,166 + -0.1 374,167 - +0.1 374,170 + -0.1 374,207 + +0.1 374,211 + -0.5 374,211 + -0.8 374,211 + -0.5 374,212 - -0.8 374,212 - -0.1 374,352 + OHPLBJKB_00339 0.16 -0.1 374,352 + OHPLBJKB_00339 0.16 -0.4 374,352 + OHPLBJKB_00339 0.16 -0.8 374,353 - OHPLBJKB_00339 0.16 -0.5 374,353 - OHPLBJKB_00339 0.16 -0.7 374,454 - OHPLBJKB_00339 0.34 -0.7 374,464 + OHPLBJKB_00339 0.35 -0.7 374,802 + +0.5 374,802 + -0.0 374,803 - -0.1 374,803 - +0.1 374,806 + +0.2 374,901 + -1.1 374,901 + -0.3 374,901 + -0.1 374,902 - -0.2 374,902 - +0.1 374,902 - +0.1 374,902 - -0.4 374,902 - -0.0 374,989 - OHPLBJKB_00340 0.30 -0.3 374,994 + OHPLBJKB_00340 0.33 +0.2 375,095 - +1.0 375,095 - -0.6 375,104 - +0.4 375,134 + +0.4 375,293 + OHPLBJKB_00341 0.33 -0.0 375,302 - OHPLBJKB_00341 0.34 +1.5 375,342 - OHPLBJKB_00341 0.41 -1.0 375,374 + OHPLBJKB_00341 0.46 +0.4 375,374 + OHPLBJKB_00341 0.46 -0.4 375,374 + OHPLBJKB_00341 0.46 -0.5 375,374 + OHPLBJKB_00341 0.46 +0.5 375,375 - OHPLBJKB_00341 0.46 -0.9 375,375 - OHPLBJKB_00341 0.46 -0.6 375,375 - OHPLBJKB_00341 0.46 -0.6 375,375 - OHPLBJKB_00341 0.46 -1.0 375,473 + OHPLBJKB_00341 0.63 +0.0 375,474 - OHPLBJKB_00341 0.63 -0.2 375,476 + OHPLBJKB_00341 0.63 -0.3 375,657 + +0.3 375,657 + +1.5 375,657 + -0.5 375,657 + +0.2 375,657 + +0.4 375,658 - +0.3 375,658 - +1.1 375,661 + -0.3 375,661 + -0.4 375,662 - +0.3 375,662 - +0.1 375,673 - +1.0 375,696 - +0.2 375,701 - -0.8 375,701 - +0.3 375,701 - +0.3 375,741 - -1.0 375,741 - -0.6 375,742 + -0.1 375,742 + +0.5 375,742 + +0.5 375,742 + +0.7 375,742 + -0.2 375,742 + +0.3 375,742 + -0.1 375,742 + -0.3 375,742 + +0.5 375,742 + -0.6 375,743 - -0.1 375,743 - +0.0 375,746 + -2.4 375,746 + +0.1 375,747 - -0.7 375,750 + -0.7 375,750 + -2.1 375,750 + -0.2 375,751 - +1.7 375,751 - -0.2 375,812 + OHPLBJKB_00342 0.15 -0.5
Or see this region's nucleotide sequence