Strain Fitness in Escherichia coli ECRC102 around NIAGMN_23245

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_23225 and NIAGMN_23230 are separated by 1 nucleotidesNIAGMN_23230 and NIAGMN_23235 are separated by 1 nucleotidesNIAGMN_23235 and NIAGMN_23240 are separated by 1 nucleotidesNIAGMN_23240 and NIAGMN_23245 are separated by 151 nucleotidesNIAGMN_23245 and NIAGMN_23250 are separated by 316 nucleotidesNIAGMN_23250 and NIAGMN_23255 overlap by 4 nucleotidesNIAGMN_23255 and NIAGMN_23260 overlap by 4 nucleotidesNIAGMN_23260 and NIAGMN_23265 overlap by 28 nucleotidesNIAGMN_23265 and exoD overlap by 4 nucleotides NIAGMN_23225: NIAGMN_23225 - hypothetical protein, at 4,570,353 to 4,570,640 _23225 NIAGMN_23230: NIAGMN_23230 - sugar acetyltransferase inhibitor, at 4,570,642 to 4,570,860 _23230 NIAGMN_23235: NIAGMN_23235 - hypothetical protein, at 4,570,862 to 4,571,077 _23235 NIAGMN_23240: NIAGMN_23240 - hypothetical protein, at 4,571,079 to 4,571,267 _23240 NIAGMN_23245: NIAGMN_23245 - Ead/Ea22-like protein, at 4,571,419 to 4,572,192 _23245 NIAGMN_23250: NIAGMN_23250 - Cell division protein ZapA, at 4,572,509 to 4,572,724 _23250 NIAGMN_23255: NIAGMN_23255 - DUF1382 domain-containing protein, at 4,572,721 to 4,572,804 _23255 NIAGMN_23260: NIAGMN_23260 - DUF1382 domain-containing protein, at 4,572,801 to 4,572,992 _23260 NIAGMN_23265: NIAGMN_23265 - cruciferin, at 4,572,965 to 4,573,147 _23265 NIAGMN_23270: exoD - Putative uncharacterized protein ExoD, at 4,573,144 to 4,573,824 exoD Position (kb) 4571 4572 4573Strain fitness (log2 ratio) -2 -1 0 1 2at 4570.445 kb on + strand, within NIAGMN_23225at 4570.654 kb on - strandat 4570.710 kb on - strand, within NIAGMN_23230at 4570.854 kb on + strandat 4570.855 kb on - strandat 4570.985 kb on - strand, within NIAGMN_23235at 4570.987 kb on - strand, within NIAGMN_23235at 4571.009 kb on - strand, within NIAGMN_23235at 4571.011 kb on - strand, within NIAGMN_23235at 4571.071 kb on + strandat 4571.078 kb on - strandat 4571.168 kb on - strand, within NIAGMN_23240at 4571.421 kb on - strandat 4571.497 kb on - strand, within NIAGMN_23245at 4571.497 kb on - strand, within NIAGMN_23245at 4571.606 kb on - strand, within NIAGMN_23245at 4571.684 kb on - strand, within NIAGMN_23245at 4571.715 kb on - strand, within NIAGMN_23245at 4572.941 kb on + strand, within NIAGMN_23260at 4572.966 kb on + strandat 4573.009 kb on + strand, within NIAGMN_23265at 4573.010 kb on - strand, within NIAGMN_23265

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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4,570,445 + NIAGMN_23225 0.32 +0.1
4,570,654 - -1.0
4,570,710 - NIAGMN_23230 0.31 +0.9
4,570,854 + -0.6
4,570,855 - +0.6
4,570,985 - NIAGMN_23235 0.57 +1.4
4,570,987 - NIAGMN_23235 0.58 +0.7
4,571,009 - NIAGMN_23235 0.68 +0.9
4,571,011 - NIAGMN_23235 0.69 +2.4
4,571,071 + +1.7
4,571,078 - -0.3
4,571,168 - NIAGMN_23240 0.47 -1.3
4,571,421 - +0.4
4,571,497 - NIAGMN_23245 0.10 -1.6
4,571,497 - NIAGMN_23245 0.10 -1.1
4,571,606 - NIAGMN_23245 0.24 -1.2
4,571,684 - NIAGMN_23245 0.34 +0.2
4,571,715 - NIAGMN_23245 0.38 +0.4
4,572,941 + NIAGMN_23260 0.73 -0.8
4,572,966 + +0.9
4,573,009 + NIAGMN_23265 0.24 -0.6
4,573,010 - NIAGMN_23265 0.25 -1.9

Or see this region's nucleotide sequence