Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dacD and NIAGMN_22520 are separated by 118 nucleotides NIAGMN_22520 and yeeA are separated by 198 nucleotides
NIAGMN_22515: dacD - serine-type D-Ala-D-Ala carboxypeptidase DacD, at 4,445,318 to 4,446,484
dacD
NIAGMN_22520: NIAGMN_22520 - DNA gyrase inhibitor, at 4,446,603 to 4,447,076
_22520
NIAGMN_22525: yeeA - Inner membrane protein YeeA, at 4,447,275 to 4,448,333
yeeA
Position (kb) 4446
4447
4448 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4445.612 kb on - strand, within dacD at 4445.735 kb on + strand, within dacD at 4445.735 kb on + strand, within dacD at 4445.735 kb on + strand, within dacD at 4445.851 kb on + strand, within dacD at 4445.917 kb on + strand, within dacD at 4445.917 kb on + strand, within dacD at 4445.921 kb on + strand, within dacD at 4445.921 kb on + strand, within dacD at 4445.921 kb on + strand, within dacD at 4445.921 kb on + strand, within dacD at 4446.022 kb on + strand, within dacD at 4446.167 kb on - strand, within dacD at 4446.308 kb on + strand, within dacD at 4446.310 kb on + strand, within dacD at 4446.310 kb on + strand, within dacD at 4446.883 kb on - strand, within NIAGMN_22520 at 4446.944 kb on + strand, within NIAGMN_22520 at 4447.002 kb on + strand, within NIAGMN_22520 at 4447.003 kb on - strand, within NIAGMN_22520 at 4447.047 kb on + strand at 4447.047 kb on + strand at 4447.074 kb on + strand at 4447.074 kb on + strand at 4447.135 kb on + strand at 4447.316 kb on - strand at 4447.394 kb on + strand, within yeeA at 4447.394 kb on + strand, within yeeA at 4447.490 kb on + strand, within yeeA at 4447.950 kb on - strand, within yeeA at 4447.965 kb on + strand, within yeeA at 4447.965 kb on + strand, within yeeA at 4447.966 kb on - strand, within yeeA at 4447.966 kb on - strand, within yeeA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 4,445,612 - dacD NIAGMN_22515 0.25 -0.3 4,445,735 + dacD NIAGMN_22515 0.36 +0.0 4,445,735 + dacD NIAGMN_22515 0.36 -0.6 4,445,735 + dacD NIAGMN_22515 0.36 +2.4 4,445,851 + dacD NIAGMN_22515 0.46 +2.4 4,445,917 + dacD NIAGMN_22515 0.51 +1.0 4,445,917 + dacD NIAGMN_22515 0.51 +0.1 4,445,921 + dacD NIAGMN_22515 0.52 -0.0 4,445,921 + dacD NIAGMN_22515 0.52 -0.8 4,445,921 + dacD NIAGMN_22515 0.52 -0.8 4,445,921 + dacD NIAGMN_22515 0.52 +0.8 4,446,022 + dacD NIAGMN_22515 0.60 -0.6 4,446,167 - dacD NIAGMN_22515 0.73 +0.5 4,446,308 + dacD NIAGMN_22515 0.85 +0.9 4,446,310 + dacD NIAGMN_22515 0.85 +1.4 4,446,310 + dacD NIAGMN_22515 0.85 -1.9 4,446,883 - NIAGMN_22520 0.59 -0.4 4,446,944 + NIAGMN_22520 0.72 -1.6 4,447,002 + NIAGMN_22520 0.84 -0.4 4,447,003 - NIAGMN_22520 0.84 -0.6 4,447,047 + +0.4 4,447,047 + -0.8 4,447,074 + +0.9 4,447,074 + +1.0 4,447,135 + +0.4 4,447,316 - -1.2 4,447,394 + yeeA NIAGMN_22525 0.11 -0.4 4,447,394 + yeeA NIAGMN_22525 0.11 -1.9 4,447,490 + yeeA NIAGMN_22525 0.20 -0.6 4,447,950 - yeeA NIAGMN_22525 0.64 +1.4 4,447,965 + yeeA NIAGMN_22525 0.65 -0.2 4,447,965 + yeeA NIAGMN_22525 0.65 +0.9 4,447,966 - yeeA NIAGMN_22525 0.65 -0.0 4,447,966 - yeeA NIAGMN_22525 0.65 +0.2
Or see this region's nucleotide sequence