Strain Fitness in Escherichia coli ECRC102 around NIAGMN_00815

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsufB and sufA are separated by 8 nucleotidessufA and ydiH are separated by 548 nucleotidesydiH and menI are separated by 99 nucleotides NIAGMN_00810: sufB - Fe-S cluster assembly protein SufB, at 137,804 to 139,291 sufB NIAGMN_00815: sufA - Fe-S cluster assembly scaffold SufA, at 139,300 to 139,668 sufA NIAGMN_00825: ydiH - Uncharacterized protein YdiH, at 140,217 to 140,405 ydiH NIAGMN_00830: menI - 1,4-dihydroxy-2-naphthoyl-CoA hydrolase, at 140,505 to 140,915 menI Position (kb) 139 140Strain fitness (log2 ratio) -1 0 1 2 3at 138.507 kb on + strand, within sufBat 138.552 kb on + strand, within sufBat 138.749 kb on - strand, within sufBat 138.832 kb on + strand, within sufBat 138.833 kb on - strand, within sufBat 138.932 kb on - strand, within sufBat 139.345 kb on - strand, within sufAat 139.505 kb on + strand, within sufAat 139.645 kb on - strandat 139.760 kb on + strandat 139.761 kb on - strandat 139.784 kb on + strandat 139.785 kb on - strandat 139.794 kb on - strandat 139.926 kb on + strandat 139.927 kb on - strandat 140.068 kb on - strandat 140.146 kb on + strandat 140.406 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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138,507 + sufB NIAGMN_00810 0.47 -0.3
138,552 + sufB NIAGMN_00810 0.50 +0.2
138,749 - sufB NIAGMN_00810 0.64 -0.4
138,832 + sufB NIAGMN_00810 0.69 +0.7
138,833 - sufB NIAGMN_00810 0.69 +0.2
138,932 - sufB NIAGMN_00810 0.76 +2.2
139,345 - sufA NIAGMN_00815 0.12 -0.4
139,505 + sufA NIAGMN_00815 0.56 -0.4
139,645 - +3.2
139,760 + +1.7
139,761 - +1.2
139,784 + -1.4
139,785 - +1.2
139,794 - -1.4
139,926 + +0.1
139,927 - -0.5
140,068 - +0.2
140,146 + -0.0
140,406 - +2.2

Or see this region's nucleotide sequence