Strain Fitness in Escherichia fergusonii Becca around EFB2_01876

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
1,988,633	-				+1.3
1,988,633	-				-0.7
1,988,633	-				-0.8
1,988,633	-				-1.8
1,988,644	+				-1.7
1,988,652	+				+2.1
1,988,652	+				+2.6
1,988,652	+				-1.8
1,988,652	+				+0.2
1,988,652	+				+1.8
1,988,653	-				-1.5
1,988,662	+				+0.1
1,988,662	+				-0.5
1,988,662	+				+0.6
1,988,663	-				-3.4
1,988,663	-				-1.2
1,988,663	-				-1.0
1,988,769	+				-0.2
1,988,769	+				-2.5
1,988,769	+				-0.9
1,988,769	+				+1.1
1,988,769	+				+2.1
1,988,769	+				-1.9
1,988,770	-				-0.0
1,988,770	-				-1.9
1,988,770	-				+0.6
1,988,770	-				-0.6
1,988,770	-				+0.6
1,988,823	+				-2.6
1,988,823	+				+0.6
1,988,823	+				-1.5
1,988,823	+				-0.1
1,988,823	+				+1.1
1,988,823	+				+1.6
1,988,824	-				+0.5
1,988,824	-				-3.7
1,988,824	-				-0.6
1,988,824	-				-1.4
1,988,824	-				-0.9
1,988,824	-				-0.4
1,988,825	+				+0.6
1,988,826	-				-0.2
1,988,826	-				-1.8
1,988,826	-				-1.5
1,988,826	-				-0.2
1,988,826	-				-1.9
1,988,826	-				+0.2
1,988,826	-				-0.1
1,988,826	-				+0.8
1,988,826	-				-0.0
1,988,826	-				-2.3
1,988,826	-				+0.8
1,988,826	-				-0.9
1,988,826	-				-1.3
1,988,826	-				+1.9
1,988,833	+				-0.3
1,988,833	+				-0.5
1,988,833	+				-0.7
1,988,833	+				-1.6
1,988,833	+				+0.1
1,988,833	+				+0.1
1,988,833	+				+0.9
1,988,833	+				+1.7
1,988,833	+				+1.0
1,988,833	+				-0.6
1,988,833	+				+1.0
1,988,833	+				-1.2
1,988,833	+				-0.0
1,988,833	+				-1.7
1,988,833	+				-0.1
1,988,833	+				-1.3
1,988,833	+				-2.2
1,988,833	+				-0.9
1,988,833	+				+0.5
1,988,833	+				-2.8
1,988,833	+				+0.2
1,988,833	+				+0.6
1,988,833	+				+0.4
1,988,833	+				-0.4
1,988,833	+				-0.7
1,988,833	+				+0.5
1,988,833	+				-0.9
1,988,833	+				+0.7
1,988,833	+				+1.4
1,988,833	+				-0.2
1,988,833	+				+0.1
1,988,833	+				+2.1
1,988,833	+				+1.1
1,988,833	+				+0.5
1,988,833	+				+0.8
1,988,833	+				+2.8
1,988,833	+				-0.1
1,988,833	+				-0.2
1,988,833	+				+2.0
1,988,833	+				-1.2
1,988,834	-				+1.1
1,988,834	-				+1.3
1,988,834	-				+0.5
1,988,834	-				+1.7
1,988,834	-				-0.7
1,988,834	-				-3.0
1,988,834	-				-0.5
1,988,834	-				+0.2
1,988,834	-				-2.1
1,988,834	-				-2.4
1,988,834	-				-0.5
1,988,834	-				+0.4
1,988,834	-				-0.3
1,988,834	-				-0.8
1,988,834	-				+0.8
1,988,834	-				-0.5
1,988,834	-				+0.0
1,988,834	-				+0.1
1,988,834	-				-0.9
1,988,834	-				-2.1
1,988,834	-				-0.2
1,988,834	-				-2.4
1,988,834	-				+0.8
1,988,834	-				+0.1
1,988,834	-				+0.3
1,988,834	-				+0.9
1,988,834	-				+1.4
1,988,834	-				+0.2
1,988,834	-				-2.4
1,988,834	-				+0.8
1,988,834	-				+0.2
1,988,834	-				-0.1
1,988,834	-				+1.2
1,988,834	-				+0.7
1,988,834	-				-2.0
1,988,834	-				+2.3
1,988,835	+				-2.8
1,988,835	+				+1.9
1,988,835	+				+0.6
1,988,835	+				+0.2
1,988,835	+				-1.0
1,988,835	+				+0.1
1,988,835	+				-1.1
1,988,835	+				+1.2
1,988,835	+				-0.3
1,988,835	+				+0.3
1,988,835	+				-0.5
1,988,836	-				-0.1
1,988,836	-				+0.3
1,988,836	-				-0.7
1,988,836	-				-0.3
1,988,836	-				+0.6
1,988,836	-				+3.0
1,988,836	-				+0.3
1,988,836	-				-0.3
1,988,836	-				+0.1
1,988,836	-				-0.5
1,988,836	-				+0.6
1,988,836	-				+2.7
1,988,836	-				-1.3
1,988,836	-				-1.5
1,988,836	-				+0.5
1,988,836	-				-1.4
1,988,836	-				-0.4
1,988,836	-				+1.2
1,988,870	+				-1.3
1,988,870	+				+0.8
1,988,870	+				+0.7
1,988,870	+				+0.3
1,988,870	+				-3.1
1,988,870	+				+1.0
1,988,871	-				+0.2
1,988,881	+				+1.1
1,988,881	+				-0.9
1,988,881	+				+1.2
1,988,882	-				-2.1
1,988,886	+				-1.2
1,988,887	-				+1.4
1,988,887	-				-1.5
1,988,891	+				-0.9
1,988,891	+				-1.1
1,988,929	-				-2.7
1,988,963	+				-1.1
1,988,963	+				-0.9
1,988,963	+				+0.3
1,988,963	+				-2.6
1,988,963	+				-1.5
1,988,963	+				+0.8
1,988,963	+				-1.1
1,988,964	-				+0.6
1,988,964	-				-0.6
1,988,964	-				-1.7
1,988,964	-				-0.5
1,988,964	-				+0.8
1,988,964	-				+0.8
1,988,964	-				-0.5
1,988,964	-				+1.8
1,988,964	-				+0.2
1,988,964	-				-1.1
1,988,964	-				+0.3
1,988,964	-				-1.6
1,988,964	-				+0.6
1,988,964	-				+0.2
1,988,969	-				+1.0
1,988,976	-				+0.5
1,988,976	-				-1.0
1,988,976	-				+1.1
1,988,976	-				-2.0
1,988,976	-				+0.6
1,988,976	-				+0.4
1,988,983	+				+1.5
1,988,983	+				+1.5
1,988,983	+				-0.8
1,988,983	+				+0.6
1,988,983	+				-0.6
1,988,984	-				+0.4
1,988,984	-				-0.0
1,988,984	-				+2.1
1,988,984	-				-0.0
1,988,984	-				-1.4
1,989,108	+		EFB2_01875	0.28	+2.4
1,989,108	+		EFB2_01875	0.28	-0.6
1,989,108	+		EFB2_01875	0.28	-0.6
1,989,108	+		EFB2_01875	0.28	+1.6
1,989,108	+		EFB2_01875	0.28	-0.3
1,989,108	+		EFB2_01875	0.28	+1.7
1,989,108	+		EFB2_01875	0.28	+1.4
1,989,108	+		EFB2_01875	0.28	+0.5
1,989,109	-		EFB2_01875	0.29	+0.1
1,989,109	-		EFB2_01875	0.29	+0.8
1,989,109	-		EFB2_01875	0.29	+0.3
1,989,109	-		EFB2_01875	0.29	-0.2
1,989,144	+		EFB2_01875	0.34	+3.1
1,989,144	+		EFB2_01875	0.34	-0.9
1,989,144	+		EFB2_01875	0.34	-1.9
1,989,144	+		EFB2_01875	0.34	+0.3
1,989,144	+		EFB2_01875	0.34	-3.6
1,989,144	+		EFB2_01875	0.34	+1.1
1,989,144	+		EFB2_01875	0.34	+1.1
1,989,145	-		EFB2_01875	0.34	-1.0
1,989,145	-		EFB2_01875	0.34	-2.7
1,989,145	-		EFB2_01875	0.34	+1.0
1,989,145	-		EFB2_01875	0.34	-2.1
1,989,145	-		EFB2_01875	0.34	-0.6
1,989,334	+		EFB2_01875	0.66	+5.7
1,989,334	+		EFB2_01875	0.66	+0.5
1,989,334	+		EFB2_01875	0.66	-3.1
1,989,334	+		EFB2_01875	0.66	+1.2
1,989,334	+		EFB2_01875	0.66	-2.5
1,989,334	+		EFB2_01875	0.66	+0.6
1,989,335	-		EFB2_01875	0.66	-0.5
1,989,335	-		EFB2_01875	0.66	-2.5
1,989,335	-		EFB2_01875	0.66	-0.2
1,989,424	+		EFB2_01875	0.81	+0.4
1,989,424	+		EFB2_01875	0.81	+2.3
1,989,424	+		EFB2_01875	0.81	+2.4
1,989,424	+		EFB2_01875	0.81	+0.5
1,989,424	+		EFB2_01875	0.81	-0.0
1,989,424	+		EFB2_01875	0.81	+0.8
1,989,424	+		EFB2_01875	0.81	-0.7
1,989,424	+		EFB2_01875	0.81	-0.3
1,989,424	+		EFB2_01875	0.81	+0.5
1,989,427	+		EFB2_01875	0.81	+1.2
1,989,427	+		EFB2_01875	0.81	+0.4
1,989,427	+		EFB2_01875	0.81	+0.4
1,989,427	+		EFB2_01875	0.81	-0.1
1,989,427	+		EFB2_01875	0.81	-1.2
1,989,427	+		EFB2_01875	0.81	-0.2
1,989,427	+		EFB2_01875	0.81	-2.0
1,989,427	+		EFB2_01875	0.81	-2.1
1,989,427	+		EFB2_01875	0.81	-0.7
1,989,457	-		EFB2_01875	0.86	+0.4
1,989,762	-		EFB2_01876	0.62	+0.3
1,989,762	-		EFB2_01876	0.62	-0.8
1,989,764	-		EFB2_01876	0.63	-2.0
1,989,768	+		EFB2_01876	0.65	-1.3
1,989,788	+		EFB2_01876	0.75	-1.4
1,989,788	+		EFB2_01876	0.75	+1.5
1,989,788	+		EFB2_01876	0.75	-0.9
1,989,788	+		EFB2_01876	0.75	-1.0
1,989,863	+				+0.6
1,989,864	-				+1.2
1,989,864	-				+0.0
1,989,864	-				-0.9
1,989,911	+				-1.5
1,989,911	+				-1.9
1,989,911	+				+0.6
1,989,911	+				-0.4
1,989,911	+				-0.1
1,989,912	-				-1.2
1,989,912	-				-0.9
1,989,964	-				+1.3
1,989,964	-				-1.2
1,990,017	-				+0.8
1,990,019	+				+0.2
1,990,019	+				-0.0
1,990,019	+				-0.4
1,990,019	+				+0.2
1,990,019	+				-0.5
1,990,019	+				+1.3
1,990,019	+				+0.0
1,990,020	-				+1.4
1,990,020	-				-2.2
1,990,020	-				-1.2
1,990,020	-				-0.2
1,990,020	-				-2.1
1,990,036	+				+0.1
1,990,036	+				-0.2
1,990,036	+				-0.3
1,990,036	+				-0.6
1,990,036	+				+0.7
1,990,036	+				+1.7
1,990,036	+				+1.1
1,990,037	-				+0.8
1,990,037	-				+2.8
1,990,037	-				-0.1
1,990,037	-				-0.8
1,990,037	-				-0.2
1,990,037	-				+0.0
1,990,037	-				+0.1
1,990,055	-				+3.7
1,990,159	+		EFB2_01877	0.10	+1.1
1,990,159	+		EFB2_01877	0.10	-0.6
1,990,159	+		EFB2_01877	0.10	-1.4
1,990,159	+		EFB2_01877	0.10	-1.2
1,990,159	+		EFB2_01877	0.10	-1.5
1,990,159	+		EFB2_01877	0.10	-0.9
1,990,159	+		EFB2_01877	0.10	-2.3
1,990,159	+		EFB2_01877	0.10	+1.1
1,990,159	+		EFB2_01877	0.10	+0.9
1,990,159	+		EFB2_01877	0.10	+2.7
1,990,159	+		EFB2_01877	0.10	-0.0
1,990,159	+		EFB2_01877	0.10	+1.5
1,990,159	+		EFB2_01877	0.10	+0.8
1,990,159	+		EFB2_01877	0.10	-0.9
1,990,159	+		EFB2_01877	0.10	+1.5
1,990,159	+		EFB2_01877	0.10	+0.2
1,990,159	+		EFB2_01877	0.10	+0.5
1,990,159	+		EFB2_01877	0.10	+0.9
1,990,159	+		EFB2_01877	0.10	+0.5
1,990,159	+		EFB2_01877	0.10	-2.2
1,990,159	+		EFB2_01877	0.10	-0.2
1,990,159	+		EFB2_01877	0.10	-0.5
1,990,159	+		EFB2_01877	0.10	+0.3
1,990,159	+		EFB2_01877	0.10	-0.4
1,990,160	-		EFB2_01877	0.10	+1.3
1,990,160	-		EFB2_01877	0.10	-1.8
1,990,160	-		EFB2_01877	0.10	-0.2
1,990,160	-		EFB2_01877	0.10	+1.2
1,990,160	-		EFB2_01877	0.10	-1.6
1,990,160	-		EFB2_01877	0.10	+1.4
1,990,160	-		EFB2_01877	0.10	+1.0
1,990,160	-		EFB2_01877	0.10	-2.1
1,990,160	-		EFB2_01877	0.10	-0.2
1,990,160	-		EFB2_01877	0.10	-0.7
1,990,160	-		EFB2_01877	0.10	+1.8
1,990,160	-		EFB2_01877	0.10	-0.5
1,990,160	-		EFB2_01877	0.10	-1.2
1,990,160	-		EFB2_01877	0.10	-0.9
1,990,160	-		EFB2_01877	0.10	-1.1
1,990,160	-		EFB2_01877	0.10	+2.1
1,990,160	-		EFB2_01877	0.10	+1.1
1,990,162	+		EFB2_01877	0.11	-0.1
1,990,162	+		EFB2_01877	0.11	+0.4
1,990,162	+		EFB2_01877	0.11	-2.5
1,990,162	+		EFB2_01877	0.11	-0.7
1,990,162	+		EFB2_01877	0.11	-0.2
1,990,162	+		EFB2_01877	0.11	+0.3
1,990,163	-		EFB2_01877	0.11	-2.1
1,990,163	-		EFB2_01877	0.11	+0.9
1,990,163	-		EFB2_01877	0.11	+0.1
1,990,163	-		EFB2_01877	0.11	-1.7
1,990,229	+		EFB2_01877	0.16	-1.2
1,990,229	+		EFB2_01877	0.16	+1.5
1,990,229	+		EFB2_01877	0.16	+1.5
1,990,229	+		EFB2_01877	0.16	+0.7
1,990,229	+		EFB2_01877	0.16	+1.8
1,990,229	+		EFB2_01877	0.16	-0.5
1,990,229	+		EFB2_01877	0.16	+2.9
1,990,229	+		EFB2_01877	0.16	-1.2
1,990,230	-		EFB2_01877	0.16	-0.4
1,990,230	-		EFB2_01877	0.16	-0.2
1,990,230	-		EFB2_01877	0.16	+0.0
1,990,230	-		EFB2_01877	0.16	+1.5
1,990,230	-		EFB2_01877	0.16	+2.7
1,990,230	-		EFB2_01877	0.16	+1.2
1,990,230	-		EFB2_01877	0.16	+0.1
1,990,230	-		EFB2_01877	0.16	-1.3
1,990,230	-		EFB2_01877	0.16	-0.2
1,990,230	-		EFB2_01877	0.16	+1.2
1,990,230	-		EFB2_01877	0.16	-1.9
1,990,260	+		EFB2_01877	0.19	-1.3
1,990,261	-		EFB2_01877	0.19	-0.7
1,990,285	-		EFB2_01877	0.21	+1.4
1,990,303	+		EFB2_01877	0.22	+1.5
1,990,303	+		EFB2_01877	0.22	+0.3
1,990,303	+		EFB2_01877	0.22	+2.4
1,990,303	+		EFB2_01877	0.22	-1.1
1,990,303	+		EFB2_01877	0.22	-1.8
1,990,303	+		EFB2_01877	0.22	+0.4
1,990,303	+		EFB2_01877	0.22	+1.1
1,990,303	+		EFB2_01877	0.22	-3.0
1,990,303	+		EFB2_01877	0.22	-2.1
1,990,303	+		EFB2_01877	0.22	-2.6
1,990,303	+		EFB2_01877	0.22	+0.6
1,990,304	-		EFB2_01877	0.22	+1.4
1,990,304	-		EFB2_01877	0.22	+0.3
1,990,391	+		EFB2_01877	0.30	-1.8
1,990,391	+		EFB2_01877	0.30	+1.6
1,990,391	+		EFB2_01877	0.30	+0.4
1,990,392	-		EFB2_01877	0.30	+0.0
1,990,438	-		EFB2_01877	0.34	+0.8
1,990,466	+		EFB2_01877	0.36	-2.7
1,990,466	+		EFB2_01877	0.36	-0.2
1,990,467	-		EFB2_01877	0.36	+2.1
1,990,503	+		EFB2_01877	0.39	-0.1
1,990,503	+		EFB2_01877	0.39	+0.8
1,990,504	-		EFB2_01877	0.39	+0.4
1,990,504	-		EFB2_01877	0.39	+1.7
1,990,507	-		EFB2_01877	0.39	+0.1
1,990,507	-		EFB2_01877	0.39	-2.7
1,990,507	-		EFB2_01877	0.39	+0.9
1,990,563	+		EFB2_01877	0.44	+1.1
1,990,563	+		EFB2_01877	0.44	-1.0
1,990,563	+		EFB2_01877	0.44	-2.7
1,990,563	+		EFB2_01877	0.44	+1.7
1,990,563	+		EFB2_01877	0.44	+0.4
1,990,563	+		EFB2_01877	0.44	+0.2
1,990,563	+		EFB2_01877	0.44	-1.9
1,990,563	+		EFB2_01877	0.44	+2.4
1,990,563	+		EFB2_01877	0.44	+1.9
1,990,563	+		EFB2_01877	0.44	-3.3
1,990,563	+		EFB2_01877	0.44	+0.1
1,990,563	+		EFB2_01877	0.44	-0.6
1,990,563	+		EFB2_01877	0.44	-3.7
1,990,563	+		EFB2_01877	0.44	+1.8
1,990,563	+		EFB2_01877	0.44	-0.1
1,990,563	+		EFB2_01877	0.44	-1.4
1,990,563	+		EFB2_01877	0.44	-0.7
1,990,563	+		EFB2_01877	0.44	+0.6
1,990,563	+		EFB2_01877	0.44	+0.5
1,990,563	+		EFB2_01877	0.44	-2.0
1,990,563	+		EFB2_01877	0.44	+0.5
1,990,563	+		EFB2_01877	0.44	-2.1
1,990,564	-		EFB2_01877	0.44	+0.7
1,990,564	-		EFB2_01877	0.44	+0.7
1,990,564	-		EFB2_01877	0.44	-1.3
1,990,564	-		EFB2_01877	0.44	+1.1
1,990,564	-		EFB2_01877	0.44	-0.1
1,990,564	-		EFB2_01877	0.44	+0.2
1,990,564	-		EFB2_01877	0.44	-1.9
1,990,564	-		EFB2_01877	0.44	+1.8
1,990,564	-		EFB2_01877	0.44	+0.4
1,990,564	-		EFB2_01877	0.44	+0.4
1,990,564	-		EFB2_01877	0.44	+0.4
1,990,564	-		EFB2_01877	0.44	+0.4
1,990,564	-		EFB2_01877	0.44	+2.4
1,990,564	-		EFB2_01877	0.44	+1.4
1,990,564	-		EFB2_01877	0.44	+0.1
1,990,564	-		EFB2_01877	0.44	+0.6
1,990,564	-		EFB2_01877	0.44	+0.7
1,990,564	-		EFB2_01877	0.44	+0.2
1,990,564	-		EFB2_01877	0.44	-2.6
1,990,564	-		EFB2_01877	0.44	+0.2
1,990,564	-		EFB2_01877	0.44	-1.3
1,990,564	-		EFB2_01877	0.44	+0.5
1,990,564	-		EFB2_01877	0.44	+0.4
1,990,564	-		EFB2_01877	0.44	+1.0
1,990,564	-		EFB2_01877	0.44	-1.5
1,990,583	+		EFB2_01877	0.46	-0.9
1,990,734	+		EFB2_01877	0.58	-0.6
1,990,734	+		EFB2_01877	0.58	-2.1
1,990,734	+		EFB2_01877	0.58	-1.0
1,990,734	+		EFB2_01877	0.58	-0.5
1,990,734	+		EFB2_01877	0.58	+0.1
1,990,734	+		EFB2_01877	0.58	-2.7
1,990,734	+		EFB2_01877	0.58	+1.2
1,990,734	+		EFB2_01877	0.58	+0.7
1,990,734	+		EFB2_01877	0.58	+1.3
1,990,734	+		EFB2_01877	0.58	+0.4
1,990,734	+		EFB2_01877	0.58	+1.2
1,990,734	+		EFB2_01877	0.58	-2.5
1,990,734	+		EFB2_01877	0.58	-2.9
1,990,734	+		EFB2_01877	0.58	+0.1
1,990,734	+		EFB2_01877	0.58	+0.5
1,990,734	+		EFB2_01877	0.58	-0.9
1,990,735	-		EFB2_01877	0.58	-0.7
1,990,735	-		EFB2_01877	0.58	-1.5
1,990,735	-		EFB2_01877	0.58	+1.1
1,990,735	-		EFB2_01877	0.58	-1.4
1,990,735	-		EFB2_01877	0.58	-3.6
1,990,735	-		EFB2_01877	0.58	+1.4
1,990,735	-		EFB2_01877	0.58	-2.9
1,990,735	-		EFB2_01877	0.58	-0.1
1,990,735	-		EFB2_01877	0.58	-0.1
1,990,735	-		EFB2_01877	0.58	+0.3
1,990,735	-		EFB2_01877	0.58	+1.3
1,990,735	-		EFB2_01877	0.58	-1.5