Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06944

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06943 and MPMX19_06944 are separated by 31 nucleotidesMPMX19_06944 and MPMX19_06945 overlap by 4 nucleotides MPMX19_06943: MPMX19_06943 - Alpha-ketoglutaric semialdehyde dehydrogenase 1, at 216,713 to 218,158 _06943 MPMX19_06944: MPMX19_06944 - Fatty acid oxidation complex subunit alpha, at 218,190 to 220,301 _06944 MPMX19_06945: MPMX19_06945 - hypothetical protein, at 220,298 to 221,539 _06945 Position (kb) 218 219 220 221Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.279 kb on - strand, within MPMX19_06943at 217.279 kb on - strand, within MPMX19_06943at 217.279 kb on - strand, within MPMX19_06943at 217.279 kb on - strand, within MPMX19_06943at 217.279 kb on - strand, within MPMX19_06943at 217.279 kb on - strand, within MPMX19_06943at 217.279 kb on - strand, within MPMX19_06943at 217.279 kb on - strand, within MPMX19_06943at 217.279 kb on - strand, within MPMX19_06943at 217.279 kb on - strand, within MPMX19_06943at 217.279 kb on - strand, within MPMX19_06943at 217.279 kb on - strand, within MPMX19_06943at 217.279 kb on - strand, within MPMX19_06943at 217.785 kb on + strand, within MPMX19_06943at 217.786 kb on - strand, within MPMX19_06943at 217.786 kb on - strand, within MPMX19_06943at 217.786 kb on - strand, within MPMX19_06943at 217.786 kb on - strand, within MPMX19_06943at 217.786 kb on - strand, within MPMX19_06943at 217.786 kb on - strand, within MPMX19_06943at 218.171 kb on - strandat 218.171 kb on - strandat 218.171 kb on - strandat 218.171 kb on - strandat 218.554 kb on + strand, within MPMX19_06944at 218.554 kb on + strand, within MPMX19_06944at 218.555 kb on - strand, within MPMX19_06944at 218.555 kb on - strand, within MPMX19_06944at 218.555 kb on - strand, within MPMX19_06944at 218.555 kb on - strand, within MPMX19_06944at 218.557 kb on + strand, within MPMX19_06944at 218.621 kb on - strand, within MPMX19_06944at 218.806 kb on + strand, within MPMX19_06944at 218.806 kb on + strand, within MPMX19_06944at 218.806 kb on + strand, within MPMX19_06944at 218.806 kb on + strand, within MPMX19_06944at 218.806 kb on + strand, within MPMX19_06944at 218.806 kb on + strand, within MPMX19_06944at 218.806 kb on + strand, within MPMX19_06944at 218.807 kb on - strand, within MPMX19_06944at 218.807 kb on - strand, within MPMX19_06944at 218.807 kb on - strand, within MPMX19_06944at 218.807 kb on - strand, within MPMX19_06944at 219.025 kb on + strand, within MPMX19_06944at 219.025 kb on + strand, within MPMX19_06944at 219.025 kb on + strand, within MPMX19_06944at 219.026 kb on - strand, within MPMX19_06944at 219.026 kb on - strand, within MPMX19_06944at 219.026 kb on - strand, within MPMX19_06944at 219.026 kb on - strand, within MPMX19_06944at 219.026 kb on - strand, within MPMX19_06944at 219.235 kb on + strand, within MPMX19_06944at 219.235 kb on + strand, within MPMX19_06944at 219.235 kb on + strand, within MPMX19_06944at 219.235 kb on + strand, within MPMX19_06944at 219.235 kb on + strand, within MPMX19_06944at 219.235 kb on + strand, within MPMX19_06944at 219.236 kb on - strand, within MPMX19_06944at 220.377 kb on + strandat 220.377 kb on + strandat 220.377 kb on + strandat 220.377 kb on + strandat 220.377 kb on + strandat 220.377 kb on + strandat 220.378 kb on - strandat 220.378 kb on - strandat 220.378 kb on - strandat 220.378 kb on - strandat 220.378 kb on - strandat 220.378 kb on - strandat 220.378 kb on - strandat 220.378 kb on - strandat 220.378 kb on - strandat 220.378 kb on - strandat 220.380 kb on + strandat 220.380 kb on + strandat 220.380 kb on + strandat 220.380 kb on + strandat 220.380 kb on + strandat 220.381 kb on - strandat 220.381 kb on - strandat 220.428 kb on + strand, within MPMX19_06945at 220.428 kb on + strand, within MPMX19_06945at 220.428 kb on + strand, within MPMX19_06945at 220.428 kb on + strand, within MPMX19_06945at 220.428 kb on + strand, within MPMX19_06945at 220.428 kb on + strand, within MPMX19_06945at 220.428 kb on + strand, within MPMX19_06945at 220.428 kb on + strand, within MPMX19_06945at 220.428 kb on + strand, within MPMX19_06945at 220.428 kb on + strand, within MPMX19_06945at 220.428 kb on + strand, within MPMX19_06945at 220.428 kb on + strand, within MPMX19_06945at 220.428 kb on + strand, within MPMX19_06945at 220.428 kb on + strand, within MPMX19_06945at 220.429 kb on - strand, within MPMX19_06945at 220.429 kb on - strand, within MPMX19_06945at 220.429 kb on - strand, within MPMX19_06945at 220.429 kb on - strand, within MPMX19_06945at 220.429 kb on - strand, within MPMX19_06945at 220.429 kb on - strand, within MPMX19_06945at 220.429 kb on - strand, within MPMX19_06945at 220.429 kb on - strand, within MPMX19_06945at 220.429 kb on - strand, within MPMX19_06945at 220.429 kb on - strand, within MPMX19_06945at 220.429 kb on - strand, within MPMX19_06945at 220.429 kb on - strand, within MPMX19_06945at 220.429 kb on - strand, within MPMX19_06945at 220.429 kb on - strand, within MPMX19_06945at 220.479 kb on + strand, within MPMX19_06945at 220.479 kb on + strand, within MPMX19_06945at 220.563 kb on + strand, within MPMX19_06945at 220.563 kb on + strand, within MPMX19_06945at 220.563 kb on + strand, within MPMX19_06945at 220.581 kb on + strand, within MPMX19_06945at 220.582 kb on - strand, within MPMX19_06945at 220.674 kb on + strand, within MPMX19_06945at 220.674 kb on + strand, within MPMX19_06945at 220.675 kb on - strand, within MPMX19_06945at 220.878 kb on + strand, within MPMX19_06945at 220.878 kb on + strand, within MPMX19_06945at 220.878 kb on + strand, within MPMX19_06945at 220.878 kb on + strand, within MPMX19_06945at 220.879 kb on - strand, within MPMX19_06945at 220.879 kb on - strand, within MPMX19_06945at 220.879 kb on - strand, within MPMX19_06945at 220.989 kb on + strand, within MPMX19_06945at 220.989 kb on + strand, within MPMX19_06945at 220.990 kb on - strand, within MPMX19_06945at 220.990 kb on - strand, within MPMX19_06945at 221.064 kb on + strand, within MPMX19_06945at 221.064 kb on + strand, within MPMX19_06945at 221.064 kb on + strand, within MPMX19_06945at 221.064 kb on + strand, within MPMX19_06945at 221.064 kb on + strand, within MPMX19_06945at 221.064 kb on + strand, within MPMX19_06945at 221.064 kb on + strand, within MPMX19_06945at 221.065 kb on - strand, within MPMX19_06945at 221.065 kb on - strand, within MPMX19_06945at 221.065 kb on - strand, within MPMX19_06945at 221.065 kb on - strand, within MPMX19_06945at 221.065 kb on - strand, within MPMX19_06945at 221.065 kb on - strand, within MPMX19_06945at 221.073 kb on + strand, within MPMX19_06945at 221.073 kb on + strand, within MPMX19_06945at 221.238 kb on + strand, within MPMX19_06945at 221.238 kb on + strand, within MPMX19_06945at 221.239 kb on - strand, within MPMX19_06945at 221.239 kb on - strand, within MPMX19_06945at 221.239 kb on - strand, within MPMX19_06945at 221.239 kb on - strand, within MPMX19_06945at 221.239 kb on - strand, within MPMX19_06945

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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217,278 + MPMX19_06943 0.39 -0.5
217,278 + MPMX19_06943 0.39 -0.7
217,278 + MPMX19_06943 0.39 +0.4
217,278 + MPMX19_06943 0.39 -0.7
217,278 + MPMX19_06943 0.39 -0.4
217,278 + MPMX19_06943 0.39 -0.4
217,278 + MPMX19_06943 0.39 -1.2
217,278 + MPMX19_06943 0.39 -0.6
217,278 + MPMX19_06943 0.39 +0.1
217,278 + MPMX19_06943 0.39 -1.1
217,278 + MPMX19_06943 0.39 -1.8
217,278 + MPMX19_06943 0.39 -1.4
217,278 + MPMX19_06943 0.39 -1.9
217,278 + MPMX19_06943 0.39 -1.1
217,278 + MPMX19_06943 0.39 -1.2
217,278 + MPMX19_06943 0.39 -0.8
217,279 - MPMX19_06943 0.39 +0.1
217,279 - MPMX19_06943 0.39 -1.2
217,279 - MPMX19_06943 0.39 +0.3
217,279 - MPMX19_06943 0.39 -0.9
217,279 - MPMX19_06943 0.39 +1.1
217,279 - MPMX19_06943 0.39 -0.6
217,279 - MPMX19_06943 0.39 -0.8
217,279 - MPMX19_06943 0.39 +0.8
217,279 - MPMX19_06943 0.39 -1.1
217,279 - MPMX19_06943 0.39 -2.5
217,279 - MPMX19_06943 0.39 -1.2
217,279 - MPMX19_06943 0.39 +1.1
217,279 - MPMX19_06943 0.39 -0.3
217,785 + MPMX19_06943 0.74 -0.3
217,786 - MPMX19_06943 0.74 +0.7
217,786 - MPMX19_06943 0.74 +0.1
217,786 - MPMX19_06943 0.74 +1.1
217,786 - MPMX19_06943 0.74 +0.5
217,786 - MPMX19_06943 0.74 +0.9
217,786 - MPMX19_06943 0.74 -0.4
218,171 - -1.3
218,171 - -0.1
218,171 - -0.9
218,171 - +0.6
218,554 + MPMX19_06944 0.17 +0.4
218,554 + MPMX19_06944 0.17 -1.9
218,555 - MPMX19_06944 0.17 +0.3
218,555 - MPMX19_06944 0.17 -0.7
218,555 - MPMX19_06944 0.17 +0.8
218,555 - MPMX19_06944 0.17 +0.8
218,557 + MPMX19_06944 0.17 -0.1
218,621 - MPMX19_06944 0.20 -0.2
218,806 + MPMX19_06944 0.29 -0.9
218,806 + MPMX19_06944 0.29 -0.6
218,806 + MPMX19_06944 0.29 +1.1
218,806 + MPMX19_06944 0.29 -0.6
218,806 + MPMX19_06944 0.29 +1.3
218,806 + MPMX19_06944 0.29 -1.7
218,806 + MPMX19_06944 0.29 -0.7
218,807 - MPMX19_06944 0.29 +0.0
218,807 - MPMX19_06944 0.29 -0.2
218,807 - MPMX19_06944 0.29 +0.8
218,807 - MPMX19_06944 0.29 -1.7
219,025 + MPMX19_06944 0.40 -1.2
219,025 + MPMX19_06944 0.40 +0.3
219,025 + MPMX19_06944 0.40 -0.8
219,026 - MPMX19_06944 0.40 -1.9
219,026 - MPMX19_06944 0.40 -0.0
219,026 - MPMX19_06944 0.40 -1.6
219,026 - MPMX19_06944 0.40 -0.0
219,026 - MPMX19_06944 0.40 -0.7
219,235 + MPMX19_06944 0.49 -0.1
219,235 + MPMX19_06944 0.49 -2.1
219,235 + MPMX19_06944 0.49 -0.5
219,235 + MPMX19_06944 0.49 -1.7
219,235 + MPMX19_06944 0.49 +1.1
219,235 + MPMX19_06944 0.49 -0.4
219,236 - MPMX19_06944 0.50 -0.7
220,377 + +0.1
220,377 + -1.0
220,377 + -2.0
220,377 + -0.0
220,377 + -0.1
220,377 + -0.2
220,378 - -0.9
220,378 - -1.4
220,378 - -1.2
220,378 - -0.5
220,378 - +0.3
220,378 - +0.5
220,378 - -0.6
220,378 - -2.6
220,378 - -1.0
220,378 - -0.2
220,380 + +1.4
220,380 + +0.7
220,380 + -0.7
220,380 + +0.3
220,380 + -0.0
220,381 - -0.9
220,381 - -2.3
220,428 + MPMX19_06945 0.10 -0.5
220,428 + MPMX19_06945 0.10 -0.7
220,428 + MPMX19_06945 0.10 +0.9
220,428 + MPMX19_06945 0.10 -0.5
220,428 + MPMX19_06945 0.10 +0.3
220,428 + MPMX19_06945 0.10 +0.3
220,428 + MPMX19_06945 0.10 -1.1
220,428 + MPMX19_06945 0.10 -1.4
220,428 + MPMX19_06945 0.10 -0.1
220,428 + MPMX19_06945 0.10 -0.3
220,428 + MPMX19_06945 0.10 -1.5
220,428 + MPMX19_06945 0.10 +1.8
220,428 + MPMX19_06945 0.10 -0.9
220,428 + MPMX19_06945 0.10 +0.5
220,429 - MPMX19_06945 0.11 -1.3
220,429 - MPMX19_06945 0.11 -0.4
220,429 - MPMX19_06945 0.11 -0.7
220,429 - MPMX19_06945 0.11 -0.5
220,429 - MPMX19_06945 0.11 -0.5
220,429 - MPMX19_06945 0.11 -0.7
220,429 - MPMX19_06945 0.11 +0.7
220,429 - MPMX19_06945 0.11 -1.4
220,429 - MPMX19_06945 0.11 -1.0
220,429 - MPMX19_06945 0.11 -0.9
220,429 - MPMX19_06945 0.11 -2.9
220,429 - MPMX19_06945 0.11 -0.0
220,429 - MPMX19_06945 0.11 +0.6
220,429 - MPMX19_06945 0.11 -0.2
220,479 + MPMX19_06945 0.15 +0.1
220,479 + MPMX19_06945 0.15 +0.7
220,563 + MPMX19_06945 0.21 +0.1
220,563 + MPMX19_06945 0.21 -0.9
220,563 + MPMX19_06945 0.21 -1.0
220,581 + MPMX19_06945 0.23 -0.4
220,582 - MPMX19_06945 0.23 -0.2
220,674 + MPMX19_06945 0.30 -0.8
220,674 + MPMX19_06945 0.30 -1.0
220,675 - MPMX19_06945 0.30 -0.5
220,878 + MPMX19_06945 0.47 -0.7
220,878 + MPMX19_06945 0.47 +0.4
220,878 + MPMX19_06945 0.47 -0.9
220,878 + MPMX19_06945 0.47 -0.8
220,879 - MPMX19_06945 0.47 +0.4
220,879 - MPMX19_06945 0.47 -0.4
220,879 - MPMX19_06945 0.47 +0.1
220,989 + MPMX19_06945 0.56 -1.0
220,989 + MPMX19_06945 0.56 -1.8
220,990 - MPMX19_06945 0.56 +0.1
220,990 - MPMX19_06945 0.56 -1.8
221,064 + MPMX19_06945 0.62 -0.5
221,064 + MPMX19_06945 0.62 -0.2
221,064 + MPMX19_06945 0.62 -1.2
221,064 + MPMX19_06945 0.62 -0.4
221,064 + MPMX19_06945 0.62 +1.1
221,064 + MPMX19_06945 0.62 +1.7
221,064 + MPMX19_06945 0.62 -1.0
221,065 - MPMX19_06945 0.62 -1.1
221,065 - MPMX19_06945 0.62 -0.1
221,065 - MPMX19_06945 0.62 +0.1
221,065 - MPMX19_06945 0.62 -1.1
221,065 - MPMX19_06945 0.62 -0.5
221,065 - MPMX19_06945 0.62 +0.1
221,073 + MPMX19_06945 0.62 +0.2
221,073 + MPMX19_06945 0.62 -1.2
221,238 + MPMX19_06945 0.76 -1.5
221,238 + MPMX19_06945 0.76 -0.8
221,239 - MPMX19_06945 0.76 -0.3
221,239 - MPMX19_06945 0.76 -1.2
221,239 - MPMX19_06945 0.76 -0.2
221,239 - MPMX19_06945 0.76 -1.4
221,239 - MPMX19_06945 0.76 -1.0

Or see this region's nucleotide sequence