Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06703

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06702 and MPMX19_06703 are separated by 82 nucleotidesMPMX19_06703 and MPMX19_06704 are separated by 297 nucleotides MPMX19_06702: MPMX19_06702 - Cadmium-transporting ATPase, at 269,728 to 272,016 _06702 MPMX19_06703: MPMX19_06703 - HTH-type transcriptional regulator HmrR, at 272,099 to 272,554 _06703 MPMX19_06704: MPMX19_06704 - Sensor histidine kinase RcsC, at 272,852 to 275,101 _06704 Position (kb) 272 273Strain fitness (log2 ratio) -3 -2 -1 0 1at 272.065 kb on + strandat 272.066 kb on - strandat 272.066 kb on - strandat 272.066 kb on - strandat 272.195 kb on + strand, within MPMX19_06703at 272.195 kb on + strand, within MPMX19_06703at 272.198 kb on + strand, within MPMX19_06703at 272.198 kb on + strand, within MPMX19_06703at 272.198 kb on + strand, within MPMX19_06703at 272.198 kb on + strand, within MPMX19_06703at 272.198 kb on + strand, within MPMX19_06703at 272.198 kb on + strand, within MPMX19_06703at 272.198 kb on + strand, within MPMX19_06703at 272.198 kb on + strand, within MPMX19_06703at 272.198 kb on + strand, within MPMX19_06703at 272.198 kb on + strand, within MPMX19_06703at 272.198 kb on + strand, within MPMX19_06703at 272.198 kb on + strand, within MPMX19_06703at 272.198 kb on + strand, within MPMX19_06703at 272.199 kb on - strand, within MPMX19_06703at 272.199 kb on - strand, within MPMX19_06703at 272.199 kb on - strand, within MPMX19_06703at 272.199 kb on - strand, within MPMX19_06703at 272.199 kb on - strand, within MPMX19_06703at 272.199 kb on - strand, within MPMX19_06703at 272.199 kb on - strand, within MPMX19_06703at 272.255 kb on + strand, within MPMX19_06703at 272.255 kb on + strand, within MPMX19_06703at 272.255 kb on + strand, within MPMX19_06703at 272.255 kb on + strand, within MPMX19_06703at 272.255 kb on + strand, within MPMX19_06703at 272.255 kb on + strand, within MPMX19_06703at 272.256 kb on - strand, within MPMX19_06703at 272.256 kb on - strand, within MPMX19_06703at 272.256 kb on - strand, within MPMX19_06703at 272.256 kb on - strand, within MPMX19_06703at 272.256 kb on - strand, within MPMX19_06703at 272.256 kb on - strand, within MPMX19_06703at 272.256 kb on - strand, within MPMX19_06703at 272.256 kb on - strand, within MPMX19_06703at 272.256 kb on - strand, within MPMX19_06703at 272.256 kb on - strand, within MPMX19_06703at 272.256 kb on - strand, within MPMX19_06703at 272.256 kb on - strand, within MPMX19_06703at 272.256 kb on - strand, within MPMX19_06703at 272.658 kb on + strandat 272.658 kb on + strandat 272.658 kb on + strandat 272.658 kb on + strandat 272.659 kb on - strandat 272.659 kb on - strandat 272.659 kb on - strandat 272.659 kb on - strandat 272.659 kb on - strandat 272.659 kb on - strandat 272.659 kb on - strandat 272.696 kb on + strandat 272.696 kb on + strandat 272.696 kb on + strandat 272.696 kb on + strandat 272.696 kb on + strandat 272.696 kb on + strandat 272.696 kb on + strandat 272.697 kb on - strandat 272.697 kb on - strandat 272.697 kb on - strandat 272.697 kb on - strandat 272.697 kb on - strandat 272.697 kb on - strandat 272.697 kb on - strandat 272.697 kb on - strandat 272.698 kb on + strandat 272.698 kb on + strandat 272.698 kb on + strandat 272.698 kb on + strandat 272.698 kb on + strandat 272.698 kb on + strandat 272.698 kb on + strandat 272.698 kb on + strandat 272.698 kb on + strandat 272.698 kb on + strandat 272.699 kb on - strandat 272.699 kb on - strandat 272.699 kb on - strandat 272.699 kb on - strandat 272.699 kb on - strandat 272.699 kb on - strandat 272.699 kb on - strandat 272.699 kb on - strandat 272.699 kb on - strandat 272.699 kb on - strandat 272.699 kb on - strandat 272.699 kb on - strandat 272.699 kb on - strandat 272.699 kb on - strandat 272.729 kb on + strandat 272.730 kb on + strandat 272.730 kb on + strandat 272.730 kb on + strandat 272.731 kb on - strandat 272.731 kb on - strandat 272.731 kb on - strandat 272.731 kb on - strandat 272.788 kb on + strandat 272.788 kb on + strandat 273.143 kb on + strand, within MPMX19_06704at 273.143 kb on + strand, within MPMX19_06704at 273.144 kb on - strand, within MPMX19_06704at 273.144 kb on - strand, within MPMX19_06704at 273.144 kb on - strand, within MPMX19_06704at 273.275 kb on + strand, within MPMX19_06704at 273.275 kb on + strand, within MPMX19_06704at 273.276 kb on - strand, within MPMX19_06704at 273.276 kb on - strand, within MPMX19_06704at 273.276 kb on - strand, within MPMX19_06704at 273.276 kb on - strand, within MPMX19_06704at 273.276 kb on - strand, within MPMX19_06704at 273.276 kb on - strand, within MPMX19_06704at 273.276 kb on - strand, within MPMX19_06704at 273.276 kb on - strand, within MPMX19_06704at 273.278 kb on + strand, within MPMX19_06704at 273.278 kb on + strand, within MPMX19_06704at 273.278 kb on + strand, within MPMX19_06704at 273.278 kb on + strand, within MPMX19_06704at 273.278 kb on + strand, within MPMX19_06704at 273.278 kb on + strand, within MPMX19_06704at 273.278 kb on + strand, within MPMX19_06704at 273.278 kb on + strand, within MPMX19_06704at 273.278 kb on + strand, within MPMX19_06704at 273.278 kb on + strand, within MPMX19_06704at 273.278 kb on + strand, within MPMX19_06704at 273.279 kb on - strand, within MPMX19_06704at 273.279 kb on - strand, within MPMX19_06704at 273.279 kb on - strand, within MPMX19_06704at 273.279 kb on - strand, within MPMX19_06704at 273.279 kb on - strand, within MPMX19_06704at 273.279 kb on - strand, within MPMX19_06704at 273.279 kb on - strand, within MPMX19_06704at 273.279 kb on - strand, within MPMX19_06704at 273.279 kb on - strand, within MPMX19_06704at 273.279 kb on - strand, within MPMX19_06704at 273.279 kb on - strand, within MPMX19_06704at 273.279 kb on - strand, within MPMX19_06704at 273.279 kb on - strand, within MPMX19_06704at 273.279 kb on - strand, within MPMX19_06704at 273.279 kb on - strand, within MPMX19_06704at 273.279 kb on - strand, within MPMX19_06704at 273.314 kb on + strand, within MPMX19_06704at 273.314 kb on + strand, within MPMX19_06704at 273.314 kb on + strand, within MPMX19_06704at 273.314 kb on + strand, within MPMX19_06704at 273.314 kb on + strand, within MPMX19_06704at 273.314 kb on + strand, within MPMX19_06704at 273.314 kb on + strand, within MPMX19_06704at 273.315 kb on - strand, within MPMX19_06704at 273.315 kb on - strand, within MPMX19_06704at 273.315 kb on - strand, within MPMX19_06704at 273.315 kb on - strand, within MPMX19_06704at 273.315 kb on - strand, within MPMX19_06704at 273.315 kb on - strand, within MPMX19_06704at 273.315 kb on - strand, within MPMX19_06704at 273.315 kb on - strand, within MPMX19_06704at 273.315 kb on - strand, within MPMX19_06704at 273.362 kb on + strand, within MPMX19_06704at 273.362 kb on + strand, within MPMX19_06704at 273.362 kb on + strand, within MPMX19_06704at 273.362 kb on + strand, within MPMX19_06704at 273.362 kb on + strand, within MPMX19_06704at 273.363 kb on - strand, within MPMX19_06704at 273.363 kb on - strand, within MPMX19_06704at 273.363 kb on - strand, within MPMX19_06704at 273.363 kb on - strand, within MPMX19_06704at 273.363 kb on - strand, within MPMX19_06704at 273.363 kb on - strand, within MPMX19_06704at 273.363 kb on - strand, within MPMX19_06704at 273.363 kb on - strand, within MPMX19_06704at 273.363 kb on - strand, within MPMX19_06704at 273.363 kb on - strand, within MPMX19_06704at 273.434 kb on + strand, within MPMX19_06704at 273.434 kb on + strand, within MPMX19_06704at 273.434 kb on + strand, within MPMX19_06704at 273.434 kb on + strand, within MPMX19_06704at 273.434 kb on + strand, within MPMX19_06704at 273.434 kb on + strand, within MPMX19_06704at 273.434 kb on + strand, within MPMX19_06704at 273.434 kb on + strand, within MPMX19_06704at 273.434 kb on + strand, within MPMX19_06704at 273.435 kb on - strand, within MPMX19_06704at 273.435 kb on - strand, within MPMX19_06704at 273.435 kb on - strand, within MPMX19_06704at 273.435 kb on - strand, within MPMX19_06704at 273.435 kb on - strand, within MPMX19_06704at 273.435 kb on - strand, within MPMX19_06704at 273.449 kb on + strand, within MPMX19_06704at 273.449 kb on + strand, within MPMX19_06704at 273.449 kb on - strand, within MPMX19_06704at 273.450 kb on - strand, within MPMX19_06704at 273.450 kb on - strand, within MPMX19_06704at 273.450 kb on - strand, within MPMX19_06704at 273.450 kb on - strand, within MPMX19_06704

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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272,065 + -0.6
272,066 - -0.7
272,066 - +0.5
272,066 - -0.8
272,195 + MPMX19_06703 0.21 -0.1
272,195 + MPMX19_06703 0.21 +0.1
272,198 + MPMX19_06703 0.22 +1.0
272,198 + MPMX19_06703 0.22 +0.1
272,198 + MPMX19_06703 0.22 +0.4
272,198 + MPMX19_06703 0.22 -0.7
272,198 + MPMX19_06703 0.22 +0.3
272,198 + MPMX19_06703 0.22 -0.4
272,198 + MPMX19_06703 0.22 -3.0
272,198 + MPMX19_06703 0.22 -0.3
272,198 + MPMX19_06703 0.22 -0.8
272,198 + MPMX19_06703 0.22 -0.6
272,198 + MPMX19_06703 0.22 -2.9
272,198 + MPMX19_06703 0.22 -0.3
272,198 + MPMX19_06703 0.22 -0.6
272,199 - MPMX19_06703 0.22 +1.1
272,199 - MPMX19_06703 0.22 -0.1
272,199 - MPMX19_06703 0.22 -1.3
272,199 - MPMX19_06703 0.22 +0.1
272,199 - MPMX19_06703 0.22 +0.4
272,199 - MPMX19_06703 0.22 -1.0
272,199 - MPMX19_06703 0.22 -1.7
272,255 + MPMX19_06703 0.34 -0.0
272,255 + MPMX19_06703 0.34 +0.1
272,255 + MPMX19_06703 0.34 -0.3
272,255 + MPMX19_06703 0.34 -0.1
272,255 + MPMX19_06703 0.34 -0.5
272,255 + MPMX19_06703 0.34 -0.9
272,256 - MPMX19_06703 0.34 -0.7
272,256 - MPMX19_06703 0.34 -0.4
272,256 - MPMX19_06703 0.34 +0.4
272,256 - MPMX19_06703 0.34 -0.7
272,256 - MPMX19_06703 0.34 -0.3
272,256 - MPMX19_06703 0.34 -1.9
272,256 - MPMX19_06703 0.34 +0.3
272,256 - MPMX19_06703 0.34 -1.0
272,256 - MPMX19_06703 0.34 +0.6
272,256 - MPMX19_06703 0.34 +0.4
272,256 - MPMX19_06703 0.34 -0.5
272,256 - MPMX19_06703 0.34 +0.1
272,256 - MPMX19_06703 0.34 -1.1
272,658 + -0.1
272,658 + +0.1
272,658 + +1.2
272,658 + +0.7
272,659 - -0.2
272,659 - +0.2
272,659 - -0.6
272,659 - -0.6
272,659 - +0.7
272,659 - -1.5
272,659 - +1.3
272,696 + -0.6
272,696 + -1.4
272,696 + -0.3
272,696 + -1.5
272,696 + +0.7
272,696 + -0.3
272,696 + +1.1
272,697 - -1.8
272,697 - -3.1
272,697 - -0.5
272,697 - -0.1
272,697 - +0.3
272,697 - +0.9
272,697 - -0.5
272,697 - -2.8
272,698 + -0.3
272,698 + -1.4
272,698 + -1.0
272,698 + -1.4
272,698 + -2.4
272,698 + -1.7
272,698 + -1.1
272,698 + +0.1
272,698 + -0.2
272,698 + -1.6
272,699 - -0.1
272,699 - -1.0
272,699 - -0.3
272,699 - -0.5
272,699 - -1.0
272,699 - +0.7
272,699 - -0.2
272,699 - -0.6
272,699 - -0.3
272,699 - -0.3
272,699 - -0.4
272,699 - -1.3
272,699 - -0.6
272,699 - -0.8
272,729 + -0.4
272,730 + +0.7
272,730 + -1.3
272,730 + -0.9
272,731 - -0.4
272,731 - -0.6
272,731 - -0.4
272,731 - -1.4
272,788 + -0.9
272,788 + -0.5
273,143 + MPMX19_06704 0.13 -1.3
273,143 + MPMX19_06704 0.13 -0.4
273,144 - MPMX19_06704 0.13 -0.5
273,144 - MPMX19_06704 0.13 -1.2
273,144 - MPMX19_06704 0.13 -0.7
273,275 + MPMX19_06704 0.19 -1.2
273,275 + MPMX19_06704 0.19 -0.9
273,276 - MPMX19_06704 0.19 +0.0
273,276 - MPMX19_06704 0.19 -0.1
273,276 - MPMX19_06704 0.19 +1.2
273,276 - MPMX19_06704 0.19 +0.1
273,276 - MPMX19_06704 0.19 +1.5
273,276 - MPMX19_06704 0.19 -0.3
273,276 - MPMX19_06704 0.19 -0.6
273,276 - MPMX19_06704 0.19 -1.2
273,278 + MPMX19_06704 0.19 -1.5
273,278 + MPMX19_06704 0.19 -0.7
273,278 + MPMX19_06704 0.19 -1.4
273,278 + MPMX19_06704 0.19 -0.5
273,278 + MPMX19_06704 0.19 -0.3
273,278 + MPMX19_06704 0.19 +1.3
273,278 + MPMX19_06704 0.19 -1.0
273,278 + MPMX19_06704 0.19 -0.9
273,278 + MPMX19_06704 0.19 -0.5
273,278 + MPMX19_06704 0.19 -1.1
273,278 + MPMX19_06704 0.19 -1.5
273,279 - MPMX19_06704 0.19 -1.9
273,279 - MPMX19_06704 0.19 +0.1
273,279 - MPMX19_06704 0.19 +1.0
273,279 - MPMX19_06704 0.19 +1.1
273,279 - MPMX19_06704 0.19 -0.7
273,279 - MPMX19_06704 0.19 +0.3
273,279 - MPMX19_06704 0.19 -0.5
273,279 - MPMX19_06704 0.19 -0.1
273,279 - MPMX19_06704 0.19 -0.1
273,279 - MPMX19_06704 0.19 -0.1
273,279 - MPMX19_06704 0.19 -0.1
273,279 - MPMX19_06704 0.19 -1.0
273,279 - MPMX19_06704 0.19 -0.7
273,279 - MPMX19_06704 0.19 -1.3
273,279 - MPMX19_06704 0.19 -0.4
273,279 - MPMX19_06704 0.19 -1.7
273,314 + MPMX19_06704 0.21 -0.5
273,314 + MPMX19_06704 0.21 -1.3
273,314 + MPMX19_06704 0.21 +1.4
273,314 + MPMX19_06704 0.21 -2.5
273,314 + MPMX19_06704 0.21 -0.7
273,314 + MPMX19_06704 0.21 +1.3
273,314 + MPMX19_06704 0.21 -1.9
273,315 - MPMX19_06704 0.21 +0.5
273,315 - MPMX19_06704 0.21 -1.3
273,315 - MPMX19_06704 0.21 +0.5
273,315 - MPMX19_06704 0.21 -0.1
273,315 - MPMX19_06704 0.21 +0.3
273,315 - MPMX19_06704 0.21 -0.3
273,315 - MPMX19_06704 0.21 +1.0
273,315 - MPMX19_06704 0.21 +1.1
273,315 - MPMX19_06704 0.21 -0.4
273,362 + MPMX19_06704 0.23 +0.1
273,362 + MPMX19_06704 0.23 -1.4
273,362 + MPMX19_06704 0.23 -1.6
273,362 + MPMX19_06704 0.23 -0.4
273,362 + MPMX19_06704 0.23 -1.0
273,363 - MPMX19_06704 0.23 -1.2
273,363 - MPMX19_06704 0.23 -1.0
273,363 - MPMX19_06704 0.23 -0.5
273,363 - MPMX19_06704 0.23 -0.2
273,363 - MPMX19_06704 0.23 -1.3
273,363 - MPMX19_06704 0.23 -0.5
273,363 - MPMX19_06704 0.23 -0.3
273,363 - MPMX19_06704 0.23 +0.5
273,363 - MPMX19_06704 0.23 -0.7
273,363 - MPMX19_06704 0.23 -0.5
273,434 + MPMX19_06704 0.26 +1.0
273,434 + MPMX19_06704 0.26 -1.5
273,434 + MPMX19_06704 0.26 -1.1
273,434 + MPMX19_06704 0.26 -1.8
273,434 + MPMX19_06704 0.26 -0.5
273,434 + MPMX19_06704 0.26 +0.3
273,434 + MPMX19_06704 0.26 +0.1
273,434 + MPMX19_06704 0.26 -1.2
273,434 + MPMX19_06704 0.26 -0.3
273,435 - MPMX19_06704 0.26 -0.9
273,435 - MPMX19_06704 0.26 -0.9
273,435 - MPMX19_06704 0.26 +0.5
273,435 - MPMX19_06704 0.26 -1.4
273,435 - MPMX19_06704 0.26 -1.4
273,435 - MPMX19_06704 0.26 -0.3
273,449 + MPMX19_06704 0.27 -2.0
273,449 + MPMX19_06704 0.27 -1.8
273,449 - MPMX19_06704 0.27 +0.5
273,450 - MPMX19_06704 0.27 -0.7
273,450 - MPMX19_06704 0.27 -0.5
273,450 - MPMX19_06704 0.27 +0.4
273,450 - MPMX19_06704 0.27 -1.2

Or see this region's nucleotide sequence