Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06307

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06304 and MPMX19_06305 are separated by 38 nucleotidesMPMX19_06305 and MPMX19_06306 are separated by 161 nucleotidesMPMX19_06306 and MPMX19_06307 are separated by 60 nucleotidesMPMX19_06307 and MPMX19_06308 are separated by 44 nucleotides MPMX19_06304: MPMX19_06304 - hypothetical protein, at 69,333 to 69,731 _06304 MPMX19_06305: MPMX19_06305 - hypothetical protein, at 69,770 to 70,318 _06305 MPMX19_06306: MPMX19_06306 - hypothetical protein, at 70,480 to 70,602 _06306 MPMX19_06307: MPMX19_06307 - hypothetical protein, at 70,663 to 71,856 _06307 MPMX19_06308: MPMX19_06308 - hypothetical protein, at 71,901 to 72,500 _06308 Position (kb) 70 71 72Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 69.744 kb on + strandat 69.744 kb on + strandat 70.002 kb on + strand, within MPMX19_06305at 70.002 kb on + strand, within MPMX19_06305at 70.003 kb on - strand, within MPMX19_06305at 70.329 kb on + strandat 70.329 kb on + strandat 70.330 kb on - strandat 70.371 kb on + strandat 70.385 kb on + strandat 70.386 kb on - strandat 70.388 kb on - strandat 70.459 kb on + strandat 70.501 kb on + strand, within MPMX19_06306at 70.502 kb on - strand, within MPMX19_06306at 70.502 kb on - strand, within MPMX19_06306at 70.518 kb on + strand, within MPMX19_06306at 70.519 kb on - strand, within MPMX19_06306at 70.558 kb on - strand, within MPMX19_06306at 70.559 kb on + strand, within MPMX19_06306at 70.560 kb on - strand, within MPMX19_06306at 70.593 kb on - strandat 70.624 kb on + strandat 70.635 kb on + strandat 70.636 kb on - strandat 70.636 kb on - strandat 70.843 kb on + strand, within MPMX19_06307at 70.873 kb on + strand, within MPMX19_06307at 70.873 kb on + strand, within MPMX19_06307at 70.873 kb on + strand, within MPMX19_06307at 70.873 kb on + strand, within MPMX19_06307at 70.873 kb on + strand, within MPMX19_06307at 70.873 kb on + strand, within MPMX19_06307at 70.873 kb on + strand, within MPMX19_06307at 70.873 kb on + strand, within MPMX19_06307at 70.873 kb on + strand, within MPMX19_06307at 70.873 kb on + strand, within MPMX19_06307at 70.873 kb on + strand, within MPMX19_06307at 70.873 kb on + strand, within MPMX19_06307at 70.873 kb on + strand, within MPMX19_06307at 70.873 kb on + strand, within MPMX19_06307at 70.873 kb on + strand, within MPMX19_06307at 70.874 kb on - strand, within MPMX19_06307at 70.874 kb on - strand, within MPMX19_06307at 70.874 kb on - strand, within MPMX19_06307at 70.874 kb on - strand, within MPMX19_06307at 70.874 kb on - strand, within MPMX19_06307at 70.874 kb on - strand, within MPMX19_06307at 70.874 kb on - strand, within MPMX19_06307at 70.874 kb on - strand, within MPMX19_06307at 70.874 kb on - strand, within MPMX19_06307at 70.874 kb on - strand, within MPMX19_06307at 70.874 kb on - strand, within MPMX19_06307at 70.874 kb on - strand, within MPMX19_06307at 70.972 kb on + strand, within MPMX19_06307at 71.045 kb on - strand, within MPMX19_06307at 71.142 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.229 kb on - strand, within MPMX19_06307at 71.229 kb on - strand, within MPMX19_06307at 71.229 kb on - strand, within MPMX19_06307at 71.229 kb on - strand, within MPMX19_06307at 71.229 kb on - strand, within MPMX19_06307at 71.229 kb on - strand, within MPMX19_06307at 71.229 kb on - strand, within MPMX19_06307at 71.229 kb on - strand, within MPMX19_06307at 71.229 kb on - strand, within MPMX19_06307at 71.229 kb on - strand, within MPMX19_06307at 71.229 kb on - strand, within MPMX19_06307at 71.431 kb on + strand, within MPMX19_06307at 71.470 kb on + strand, within MPMX19_06307at 71.471 kb on - strand, within MPMX19_06307at 71.471 kb on - strand, within MPMX19_06307at 71.629 kb on + strand, within MPMX19_06307at 71.629 kb on + strand, within MPMX19_06307at 71.629 kb on + strand, within MPMX19_06307at 71.629 kb on + strand, within MPMX19_06307at 71.630 kb on - strand, within MPMX19_06307at 71.630 kb on - strand, within MPMX19_06307at 71.630 kb on - strand, within MPMX19_06307at 71.630 kb on - strand, within MPMX19_06307at 71.679 kb on + strand, within MPMX19_06307at 71.680 kb on - strand, within MPMX19_06307at 71.914 kb on + strandat 71.915 kb on - strandat 71.915 kb on - strandat 71.915 kb on - strandat 71.924 kb on + strandat 71.924 kb on + strandat 71.924 kb on + strandat 71.924 kb on + strandat 71.925 kb on - strandat 71.925 kb on - strandat 71.925 kb on - strandat 72.026 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.239 kb on - strand, within MPMX19_06308at 72.239 kb on - strand, within MPMX19_06308at 72.239 kb on - strand, within MPMX19_06308at 72.239 kb on - strand, within MPMX19_06308at 72.239 kb on - strand, within MPMX19_06308at 72.239 kb on - strand, within MPMX19_06308at 72.239 kb on - strand, within MPMX19_06308at 72.239 kb on - strand, within MPMX19_06308at 72.239 kb on - strand, within MPMX19_06308at 72.381 kb on + strand, within MPMX19_06308at 72.381 kb on + strand, within MPMX19_06308at 72.381 kb on + strand, within MPMX19_06308at 72.382 kb on - strand, within MPMX19_06308at 72.382 kb on - strand, within MPMX19_06308at 72.382 kb on - strand, within MPMX19_06308at 72.382 kb on - strand, within MPMX19_06308at 72.382 kb on - strand, within MPMX19_06308at 72.382 kb on - strand, within MPMX19_06308at 72.666 kb on + strandat 72.666 kb on + strandat 72.733 kb on + strandat 72.802 kb on + strandat 72.802 kb on + strandat 72.803 kb on - strandat 72.809 kb on + strandat 72.809 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
69,744 + -0.7
69,744 + -0.7
70,002 + MPMX19_06305 0.42 -1.7
70,002 + MPMX19_06305 0.42 +0.1
70,003 - MPMX19_06305 0.42 -1.3
70,329 + +0.1
70,329 + +0.3
70,330 - -1.6
70,371 + -1.6
70,385 + -0.2
70,386 - -1.4
70,388 - +0.6
70,459 + -2.3
70,501 + MPMX19_06306 0.17 -0.8
70,502 - MPMX19_06306 0.18 -0.9
70,502 - MPMX19_06306 0.18 -1.9
70,518 + MPMX19_06306 0.31 -0.2
70,519 - MPMX19_06306 0.32 -0.5
70,558 - MPMX19_06306 0.63 +0.8
70,559 + MPMX19_06306 0.64 -1.1
70,560 - MPMX19_06306 0.65 -1.5
70,593 - -1.3
70,624 + +0.4
70,635 + +0.7
70,636 - -0.4
70,636 - -0.1
70,843 + MPMX19_06307 0.15 +0.2
70,873 + MPMX19_06307 0.18 -2.4
70,873 + MPMX19_06307 0.18 -0.6
70,873 + MPMX19_06307 0.18 -0.4
70,873 + MPMX19_06307 0.18 +0.2
70,873 + MPMX19_06307 0.18 +0.4
70,873 + MPMX19_06307 0.18 -0.2
70,873 + MPMX19_06307 0.18 -0.6
70,873 + MPMX19_06307 0.18 -2.2
70,873 + MPMX19_06307 0.18 +1.9
70,873 + MPMX19_06307 0.18 -0.9
70,873 + MPMX19_06307 0.18 -0.3
70,873 + MPMX19_06307 0.18 -0.2
70,873 + MPMX19_06307 0.18 +2.3
70,873 + MPMX19_06307 0.18 -0.7
70,873 + MPMX19_06307 0.18 -1.8
70,874 - MPMX19_06307 0.18 +0.1
70,874 - MPMX19_06307 0.18 +0.8
70,874 - MPMX19_06307 0.18 +0.9
70,874 - MPMX19_06307 0.18 -0.7
70,874 - MPMX19_06307 0.18 +0.3
70,874 - MPMX19_06307 0.18 -0.7
70,874 - MPMX19_06307 0.18 +0.0
70,874 - MPMX19_06307 0.18 -0.1
70,874 - MPMX19_06307 0.18 -0.1
70,874 - MPMX19_06307 0.18 -0.6
70,874 - MPMX19_06307 0.18 -0.6
70,874 - MPMX19_06307 0.18 -0.9
70,972 + MPMX19_06307 0.26 -0.6
71,045 - MPMX19_06307 0.32 -1.3
71,142 + MPMX19_06307 0.40 +0.6
71,228 + MPMX19_06307 0.47 +0.2
71,228 + MPMX19_06307 0.47 -0.9
71,228 + MPMX19_06307 0.47 +0.4
71,228 + MPMX19_06307 0.47 -0.1
71,228 + MPMX19_06307 0.47 +0.4
71,228 + MPMX19_06307 0.47 +0.3
71,228 + MPMX19_06307 0.47 -1.1
71,228 + MPMX19_06307 0.47 -0.2
71,228 + MPMX19_06307 0.47 -0.3
71,228 + MPMX19_06307 0.47 -2.2
71,228 + MPMX19_06307 0.47 -0.3
71,228 + MPMX19_06307 0.47 -1.5
71,228 + MPMX19_06307 0.47 +0.1
71,228 + MPMX19_06307 0.47 +0.1
71,228 + MPMX19_06307 0.47 -0.8
71,228 + MPMX19_06307 0.47 -0.8
71,228 + MPMX19_06307 0.47 -0.2
71,228 + MPMX19_06307 0.47 -1.7
71,228 + MPMX19_06307 0.47 -1.4
71,228 + MPMX19_06307 0.47 +0.5
71,228 + MPMX19_06307 0.47 -0.3
71,228 + MPMX19_06307 0.47 -0.7
71,228 + MPMX19_06307 0.47 -1.7
71,228 + MPMX19_06307 0.47 -2.0
71,228 + MPMX19_06307 0.47 -0.3
71,229 - MPMX19_06307 0.47 -0.6
71,229 - MPMX19_06307 0.47 -0.9
71,229 - MPMX19_06307 0.47 -0.8
71,229 - MPMX19_06307 0.47 +0.2
71,229 - MPMX19_06307 0.47 -1.2
71,229 - MPMX19_06307 0.47 -1.2
71,229 - MPMX19_06307 0.47 -1.0
71,229 - MPMX19_06307 0.47 -0.3
71,229 - MPMX19_06307 0.47 -0.1
71,229 - MPMX19_06307 0.47 +1.7
71,229 - MPMX19_06307 0.47 +0.5
71,431 + MPMX19_06307 0.64 -0.6
71,470 + MPMX19_06307 0.68 +1.7
71,471 - MPMX19_06307 0.68 -0.1
71,471 - MPMX19_06307 0.68 -0.1
71,629 + MPMX19_06307 0.81 +0.8
71,629 + MPMX19_06307 0.81 -0.2
71,629 + MPMX19_06307 0.81 +0.3
71,629 + MPMX19_06307 0.81 -0.6
71,630 - MPMX19_06307 0.81 +0.8
71,630 - MPMX19_06307 0.81 -2.1
71,630 - MPMX19_06307 0.81 -0.7
71,630 - MPMX19_06307 0.81 -1.7
71,679 + MPMX19_06307 0.85 -0.7
71,680 - MPMX19_06307 0.85 +0.9
71,914 + -0.7
71,915 - +0.8
71,915 - +0.7
71,915 - +0.6
71,924 + +0.4
71,924 + -0.7
71,924 + -1.3
71,924 + +0.3
71,925 - +0.3
71,925 - -0.9
71,925 - -0.6
72,026 + MPMX19_06308 0.21 -0.2
72,238 + MPMX19_06308 0.56 -1.2
72,238 + MPMX19_06308 0.56 -1.0
72,238 + MPMX19_06308 0.56 +0.8
72,238 + MPMX19_06308 0.56 -0.7
72,238 + MPMX19_06308 0.56 -1.1
72,238 + MPMX19_06308 0.56 -2.1
72,238 + MPMX19_06308 0.56 -2.3
72,238 + MPMX19_06308 0.56 -1.1
72,238 + MPMX19_06308 0.56 +1.3
72,238 + MPMX19_06308 0.56 -0.2
72,238 + MPMX19_06308 0.56 +0.4
72,238 + MPMX19_06308 0.56 +0.5
72,238 + MPMX19_06308 0.56 -0.6
72,238 + MPMX19_06308 0.56 -0.7
72,238 + MPMX19_06308 0.56 -0.9
72,238 + MPMX19_06308 0.56 -0.6
72,238 + MPMX19_06308 0.56 -0.7
72,238 + MPMX19_06308 0.56 -1.6
72,239 - MPMX19_06308 0.56 +1.3
72,239 - MPMX19_06308 0.56 -1.2
72,239 - MPMX19_06308 0.56 -0.4
72,239 - MPMX19_06308 0.56 -1.7
72,239 - MPMX19_06308 0.56 +0.1
72,239 - MPMX19_06308 0.56 -0.9
72,239 - MPMX19_06308 0.56 -1.0
72,239 - MPMX19_06308 0.56 -0.9
72,239 - MPMX19_06308 0.56 +0.1
72,381 + MPMX19_06308 0.80 +1.3
72,381 + MPMX19_06308 0.80 -0.1
72,381 + MPMX19_06308 0.80 +0.3
72,382 - MPMX19_06308 0.80 +1.4
72,382 - MPMX19_06308 0.80 -0.5
72,382 - MPMX19_06308 0.80 -1.1
72,382 - MPMX19_06308 0.80 -0.6
72,382 - MPMX19_06308 0.80 +1.8
72,382 - MPMX19_06308 0.80 -1.6
72,666 + -1.2
72,666 + -1.1
72,733 + +0.1
72,802 + -2.8
72,802 + +0.1
72,803 - -0.8
72,809 + -1.0
72,809 + +0.3

Or see this region's nucleotide sequence