Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05709

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05708 and MPMX19_05709 are separated by 100 nucleotidesMPMX19_05709 and MPMX19_05710 overlap by 4 nucleotides MPMX19_05708: MPMX19_05708 - hypothetical protein, at 426,483 to 428,561 _05708 MPMX19_05709: MPMX19_05709 - hypothetical protein, at 428,662 to 429,594 _05709 MPMX19_05710: MPMX19_05710 - Uric acid transporter UacT, at 429,591 to 430,955 _05710 Position (kb) 428 429 430Strain fitness (log2 ratio) -2 -1 0 1at 427.746 kb on + strand, within MPMX19_05708at 427.746 kb on + strand, within MPMX19_05708at 427.746 kb on + strand, within MPMX19_05708at 427.746 kb on + strand, within MPMX19_05708at 427.746 kb on + strand, within MPMX19_05708at 427.746 kb on + strand, within MPMX19_05708at 427.746 kb on + strand, within MPMX19_05708at 427.746 kb on + strand, within MPMX19_05708at 427.746 kb on + strand, within MPMX19_05708at 427.747 kb on - strand, within MPMX19_05708at 427.747 kb on - strand, within MPMX19_05708at 427.747 kb on - strand, within MPMX19_05708at 427.747 kb on - strand, within MPMX19_05708at 427.747 kb on - strand, within MPMX19_05708at 427.747 kb on - strand, within MPMX19_05708at 427.747 kb on - strand, within MPMX19_05708at 427.839 kb on + strand, within MPMX19_05708at 427.839 kb on + strand, within MPMX19_05708at 427.839 kb on + strand, within MPMX19_05708at 427.839 kb on + strand, within MPMX19_05708at 427.840 kb on - strand, within MPMX19_05708at 428.259 kb on + strand, within MPMX19_05708at 428.274 kb on + strand, within MPMX19_05708at 428.274 kb on + strand, within MPMX19_05708at 428.274 kb on + strand, within MPMX19_05708at 428.623 kb on + strandat 428.623 kb on + strandat 428.623 kb on + strandat 428.654 kb on + strandat 428.654 kb on + strandat 428.654 kb on + strandat 428.654 kb on + strandat 428.655 kb on - strandat 428.872 kb on + strand, within MPMX19_05709at 428.872 kb on + strand, within MPMX19_05709at 428.873 kb on - strand, within MPMX19_05709at 428.938 kb on + strand, within MPMX19_05709at 428.938 kb on + strand, within MPMX19_05709at 428.938 kb on + strand, within MPMX19_05709at 428.939 kb on - strand, within MPMX19_05709at 428.939 kb on - strand, within MPMX19_05709at 428.939 kb on - strand, within MPMX19_05709at 428.939 kb on - strand, within MPMX19_05709at 428.939 kb on - strand, within MPMX19_05709at 428.939 kb on - strand, within MPMX19_05709at 428.989 kb on + strand, within MPMX19_05709at 428.989 kb on + strand, within MPMX19_05709at 428.989 kb on + strand, within MPMX19_05709at 428.989 kb on + strand, within MPMX19_05709at 428.989 kb on + strand, within MPMX19_05709at 428.989 kb on + strand, within MPMX19_05709at 428.989 kb on + strand, within MPMX19_05709at 428.989 kb on + strand, within MPMX19_05709at 428.989 kb on + strand, within MPMX19_05709at 428.989 kb on + strand, within MPMX19_05709at 428.989 kb on + strand, within MPMX19_05709at 428.989 kb on + strand, within MPMX19_05709at 428.989 kb on + strand, within MPMX19_05709at 428.989 kb on + strand, within MPMX19_05709at 428.989 kb on + strand, within MPMX19_05709at 428.989 kb on + strand, within MPMX19_05709at 428.989 kb on + strand, within MPMX19_05709at 428.989 kb on + strand, within MPMX19_05709at 428.989 kb on + strand, within MPMX19_05709at 428.990 kb on - strand, within MPMX19_05709at 428.990 kb on - strand, within MPMX19_05709at 428.990 kb on - strand, within MPMX19_05709at 428.990 kb on - strand, within MPMX19_05709at 428.990 kb on - strand, within MPMX19_05709at 428.990 kb on - strand, within MPMX19_05709at 428.990 kb on - strand, within MPMX19_05709at 428.990 kb on - strand, within MPMX19_05709at 428.990 kb on - strand, within MPMX19_05709at 428.990 kb on - strand, within MPMX19_05709at 428.990 kb on - strand, within MPMX19_05709at 428.990 kb on - strand, within MPMX19_05709at 428.990 kb on - strand, within MPMX19_05709at 428.990 kb on - strand, within MPMX19_05709at 428.990 kb on - strand, within MPMX19_05709at 428.990 kb on - strand, within MPMX19_05709at 428.990 kb on - strand, within MPMX19_05709at 428.990 kb on - strand, within MPMX19_05709at 429.166 kb on + strand, within MPMX19_05709at 429.167 kb on - strand, within MPMX19_05709at 429.205 kb on + strand, within MPMX19_05709at 429.206 kb on - strand, within MPMX19_05709at 429.206 kb on - strand, within MPMX19_05709at 429.409 kb on + strand, within MPMX19_05709at 429.409 kb on + strand, within MPMX19_05709at 429.410 kb on - strand, within MPMX19_05709at 429.410 kb on - strand, within MPMX19_05709at 429.454 kb on + strand, within MPMX19_05709at 429.454 kb on + strand, within MPMX19_05709at 429.454 kb on + strand, within MPMX19_05709at 429.454 kb on + strand, within MPMX19_05709at 429.455 kb on - strand, within MPMX19_05709at 429.455 kb on - strand, within MPMX19_05709at 429.455 kb on - strand, within MPMX19_05709at 429.592 kb on + strandat 429.592 kb on + strandat 429.592 kb on + strandat 429.592 kb on + strandat 429.592 kb on + strandat 429.592 kb on + strandat 429.592 kb on + strandat 429.593 kb on - strandat 429.593 kb on - strandat 429.593 kb on - strandat 429.593 kb on - strandat 429.593 kb on - strandat 429.593 kb on - strandat 429.593 kb on - strandat 429.664 kb on + strandat 429.664 kb on + strandat 429.664 kb on + strandat 429.664 kb on + strandat 429.664 kb on + strandat 429.664 kb on + strandat 429.665 kb on - strandat 429.665 kb on - strandat 429.665 kb on - strandat 429.665 kb on - strandat 429.665 kb on - strandat 429.665 kb on - strandat 429.665 kb on - strandat 429.936 kb on + strand, within MPMX19_05710at 429.936 kb on + strand, within MPMX19_05710at 429.936 kb on + strand, within MPMX19_05710at 429.936 kb on + strand, within MPMX19_05710at 429.936 kb on + strand, within MPMX19_05710at 429.936 kb on + strand, within MPMX19_05710at 429.936 kb on + strand, within MPMX19_05710at 429.937 kb on - strand, within MPMX19_05710at 429.937 kb on - strand, within MPMX19_05710at 429.937 kb on - strand, within MPMX19_05710at 429.937 kb on - strand, within MPMX19_05710at 429.937 kb on - strand, within MPMX19_05710at 430.048 kb on + strand, within MPMX19_05710at 430.048 kb on + strand, within MPMX19_05710at 430.048 kb on + strand, within MPMX19_05710at 430.048 kb on + strand, within MPMX19_05710at 430.049 kb on - strand, within MPMX19_05710at 430.049 kb on - strand, within MPMX19_05710at 430.049 kb on - strand, within MPMX19_05710at 430.049 kb on - strand, within MPMX19_05710at 430.049 kb on - strand, within MPMX19_05710

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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427,746 + MPMX19_05708 0.61 +1.1
427,746 + MPMX19_05708 0.61 -0.9
427,746 + MPMX19_05708 0.61 -0.7
427,746 + MPMX19_05708 0.61 -0.8
427,746 + MPMX19_05708 0.61 +1.3
427,746 + MPMX19_05708 0.61 -2.1
427,746 + MPMX19_05708 0.61 -0.5
427,746 + MPMX19_05708 0.61 -0.6
427,746 + MPMX19_05708 0.61 -0.1
427,747 - MPMX19_05708 0.61 -0.2
427,747 - MPMX19_05708 0.61 +0.2
427,747 - MPMX19_05708 0.61 -0.9
427,747 - MPMX19_05708 0.61 -0.2
427,747 - MPMX19_05708 0.61 -0.3
427,747 - MPMX19_05708 0.61 -0.2
427,747 - MPMX19_05708 0.61 -0.0
427,839 + MPMX19_05708 0.65 -0.4
427,839 + MPMX19_05708 0.65 -0.4
427,839 + MPMX19_05708 0.65 -1.4
427,839 + MPMX19_05708 0.65 +0.9
427,840 - MPMX19_05708 0.65 -0.0
428,259 + MPMX19_05708 0.85 +1.0
428,274 + MPMX19_05708 0.86 -0.7
428,274 + MPMX19_05708 0.86 -0.9
428,274 + MPMX19_05708 0.86 -1.5
428,623 + -0.3
428,623 + -0.2
428,623 + -1.2
428,654 + -0.6
428,654 + -0.9
428,654 + +0.1
428,654 + -1.5
428,655 - -0.5
428,872 + MPMX19_05709 0.23 -0.7
428,872 + MPMX19_05709 0.23 -0.9
428,873 - MPMX19_05709 0.23 +0.5
428,938 + MPMX19_05709 0.30 -0.5
428,938 + MPMX19_05709 0.30 -1.6
428,938 + MPMX19_05709 0.30 +0.1
428,939 - MPMX19_05709 0.30 -1.5
428,939 - MPMX19_05709 0.30 -1.1
428,939 - MPMX19_05709 0.30 -0.9
428,939 - MPMX19_05709 0.30 -0.7
428,939 - MPMX19_05709 0.30 -0.7
428,939 - MPMX19_05709 0.30 -1.0
428,989 + MPMX19_05709 0.35 -0.1
428,989 + MPMX19_05709 0.35 -0.9
428,989 + MPMX19_05709 0.35 -1.1
428,989 + MPMX19_05709 0.35 -0.4
428,989 + MPMX19_05709 0.35 -1.0
428,989 + MPMX19_05709 0.35 +0.5
428,989 + MPMX19_05709 0.35 +0.1
428,989 + MPMX19_05709 0.35 -1.9
428,989 + MPMX19_05709 0.35 +0.3
428,989 + MPMX19_05709 0.35 -1.2
428,989 + MPMX19_05709 0.35 -0.2
428,989 + MPMX19_05709 0.35 +0.1
428,989 + MPMX19_05709 0.35 -0.1
428,989 + MPMX19_05709 0.35 -0.7
428,989 + MPMX19_05709 0.35 -0.7
428,989 + MPMX19_05709 0.35 -0.5
428,989 + MPMX19_05709 0.35 -1.2
428,989 + MPMX19_05709 0.35 -0.6
428,989 + MPMX19_05709 0.35 -0.7
428,990 - MPMX19_05709 0.35 -1.2
428,990 - MPMX19_05709 0.35 -1.3
428,990 - MPMX19_05709 0.35 -0.3
428,990 - MPMX19_05709 0.35 -1.1
428,990 - MPMX19_05709 0.35 -0.4
428,990 - MPMX19_05709 0.35 -0.1
428,990 - MPMX19_05709 0.35 -1.7
428,990 - MPMX19_05709 0.35 -1.7
428,990 - MPMX19_05709 0.35 -0.4
428,990 - MPMX19_05709 0.35 -0.6
428,990 - MPMX19_05709 0.35 -1.3
428,990 - MPMX19_05709 0.35 -1.0
428,990 - MPMX19_05709 0.35 -0.1
428,990 - MPMX19_05709 0.35 +0.6
428,990 - MPMX19_05709 0.35 -0.9
428,990 - MPMX19_05709 0.35 -0.4
428,990 - MPMX19_05709 0.35 -0.6
428,990 - MPMX19_05709 0.35 -0.7
429,166 + MPMX19_05709 0.54 +0.8
429,167 - MPMX19_05709 0.54 -1.7
429,205 + MPMX19_05709 0.58 -1.5
429,206 - MPMX19_05709 0.58 -1.1
429,206 - MPMX19_05709 0.58 -1.3
429,409 + MPMX19_05709 0.80 -0.2
429,409 + MPMX19_05709 0.80 -0.6
429,410 - MPMX19_05709 0.80 -1.8
429,410 - MPMX19_05709 0.80 -1.3
429,454 + MPMX19_05709 0.85 -1.4
429,454 + MPMX19_05709 0.85 +0.1
429,454 + MPMX19_05709 0.85 -2.1
429,454 + MPMX19_05709 0.85 +0.2
429,455 - MPMX19_05709 0.85 -2.1
429,455 - MPMX19_05709 0.85 +0.5
429,455 - MPMX19_05709 0.85 +1.0
429,592 + -0.4
429,592 + -0.4
429,592 + +0.8
429,592 + -2.0
429,592 + -0.7
429,592 + +0.1
429,592 + -0.1
429,593 - +0.1
429,593 - -0.9
429,593 - -0.7
429,593 - +0.9
429,593 - -0.3
429,593 - -1.1
429,593 - -0.8
429,664 + -1.0
429,664 + +0.4
429,664 + -1.0
429,664 + +0.1
429,664 + -0.3
429,664 + -0.9
429,665 - -1.1
429,665 - +0.2
429,665 - +0.5
429,665 - +1.1
429,665 - -1.1
429,665 - -0.3
429,665 - -1.5
429,936 + MPMX19_05710 0.25 +0.2
429,936 + MPMX19_05710 0.25 +0.5
429,936 + MPMX19_05710 0.25 +0.5
429,936 + MPMX19_05710 0.25 +0.8
429,936 + MPMX19_05710 0.25 +0.5
429,936 + MPMX19_05710 0.25 +0.4
429,936 + MPMX19_05710 0.25 -1.1
429,937 - MPMX19_05710 0.25 +0.2
429,937 - MPMX19_05710 0.25 -1.2
429,937 - MPMX19_05710 0.25 -0.4
429,937 - MPMX19_05710 0.25 -1.6
429,937 - MPMX19_05710 0.25 +0.5
430,048 + MPMX19_05710 0.33 -0.5
430,048 + MPMX19_05710 0.33 -0.7
430,048 + MPMX19_05710 0.33 +1.3
430,048 + MPMX19_05710 0.33 +0.3
430,049 - MPMX19_05710 0.34 -0.9
430,049 - MPMX19_05710 0.34 -1.1
430,049 - MPMX19_05710 0.34 -1.7
430,049 - MPMX19_05710 0.34 -1.3
430,049 - MPMX19_05710 0.34 -1.9

Or see this region's nucleotide sequence