Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05260 and MPMX19_05261 overlap by 4 nucleotides MPMX19_05261 and MPMX19_05262 are separated by 90 nucleotides MPMX19_05262 and MPMX19_05263 are separated by 6 nucleotides
MPMX19_05260: MPMX19_05260 - Cobalt-zinc-cadmium resistance protein CzcA, at 792,920 to 796,042
_05260
MPMX19_05261: MPMX19_05261 - Multidrug resistance protein MdtE, at 796,039 to 797,157
_05261
MPMX19_05262: MPMX19_05262 - hypothetical protein, at 797,248 to 797,880
_05262
MPMX19_05263: MPMX19_05263 - hypothetical protein, at 797,887 to 799,308
_05263
Position (kb) 796
797
798 Strain fitness (log2 ratio) -2
-1
0
1
2 at 795.204 kb on + strand, within MPMX19_05260 at 795.204 kb on + strand, within MPMX19_05260 at 795.205 kb on - strand, within MPMX19_05260 at 795.205 kb on - strand, within MPMX19_05260 at 795.205 kb on - strand, within MPMX19_05260 at 795.205 kb on - strand, within MPMX19_05260 at 795.205 kb on - strand, within MPMX19_05260 at 795.216 kb on + strand, within MPMX19_05260 at 795.216 kb on + strand, within MPMX19_05260 at 795.216 kb on + strand, within MPMX19_05260 at 795.216 kb on + strand, within MPMX19_05260 at 795.216 kb on + strand, within MPMX19_05260 at 795.217 kb on - strand, within MPMX19_05260 at 795.234 kb on + strand, within MPMX19_05260 at 795.234 kb on + strand, within MPMX19_05260 at 795.234 kb on + strand, within MPMX19_05260 at 795.234 kb on + strand, within MPMX19_05260 at 795.235 kb on - strand, within MPMX19_05260 at 795.235 kb on - strand, within MPMX19_05260 at 795.345 kb on + strand, within MPMX19_05260 at 795.345 kb on + strand, within MPMX19_05260 at 795.345 kb on + strand, within MPMX19_05260 at 795.345 kb on + strand, within MPMX19_05260 at 795.345 kb on + strand, within MPMX19_05260 at 795.345 kb on + strand, within MPMX19_05260 at 795.345 kb on + strand, within MPMX19_05260 at 795.346 kb on - strand, within MPMX19_05260 at 795.346 kb on - strand, within MPMX19_05260 at 795.346 kb on - strand, within MPMX19_05260 at 795.346 kb on - strand, within MPMX19_05260 at 795.346 kb on - strand, within MPMX19_05260 at 795.346 kb on - strand, within MPMX19_05260 at 795.346 kb on - strand, within MPMX19_05260 at 795.346 kb on - strand, within MPMX19_05260 at 795.346 kb on - strand, within MPMX19_05260 at 795.346 kb on - strand, within MPMX19_05260 at 795.346 kb on - strand, within MPMX19_05260 at 795.471 kb on + strand, within MPMX19_05260 at 795.471 kb on + strand, within MPMX19_05260 at 795.471 kb on + strand, within MPMX19_05260 at 795.471 kb on + strand, within MPMX19_05260 at 795.471 kb on + strand, within MPMX19_05260 at 795.472 kb on - strand, within MPMX19_05260 at 795.472 kb on - strand, within MPMX19_05260 at 795.472 kb on - strand, within MPMX19_05260 at 795.472 kb on - strand, within MPMX19_05260 at 795.472 kb on - strand, within MPMX19_05260 at 795.472 kb on - strand, within MPMX19_05260 at 795.472 kb on - strand, within MPMX19_05260 at 795.472 kb on - strand, within MPMX19_05260 at 795.600 kb on + strand, within MPMX19_05260 at 795.600 kb on + strand, within MPMX19_05260 at 795.600 kb on + strand, within MPMX19_05260 at 795.600 kb on + strand, within MPMX19_05260 at 795.600 kb on + strand, within MPMX19_05260 at 795.600 kb on + strand, within MPMX19_05260 at 795.601 kb on - strand, within MPMX19_05260 at 795.601 kb on - strand, within MPMX19_05260 at 795.601 kb on - strand, within MPMX19_05260 at 795.601 kb on - strand, within MPMX19_05260 at 795.601 kb on - strand, within MPMX19_05260 at 795.601 kb on - strand, within MPMX19_05260 at 795.601 kb on - strand, within MPMX19_05260 at 795.601 kb on - strand, within MPMX19_05260 at 795.605 kb on - strand, within MPMX19_05260 at 795.605 kb on - strand, within MPMX19_05260 at 795.612 kb on + strand, within MPMX19_05260 at 795.612 kb on + strand, within MPMX19_05260 at 795.613 kb on - strand, within MPMX19_05260 at 795.613 kb on - strand, within MPMX19_05260 at 795.669 kb on + strand, within MPMX19_05260 at 795.670 kb on - strand, within MPMX19_05260 at 795.670 kb on - strand, within MPMX19_05260 at 795.702 kb on + strand, within MPMX19_05260 at 795.703 kb on - strand, within MPMX19_05260 at 795.703 kb on - strand, within MPMX19_05260 at 795.780 kb on + strand at 795.780 kb on + strand at 795.780 kb on + strand at 795.780 kb on + strand at 795.780 kb on + strand at 795.781 kb on - strand at 795.781 kb on - strand at 795.781 kb on - strand at 795.798 kb on + strand at 795.798 kb on + strand at 795.798 kb on + strand at 795.798 kb on + strand at 795.798 kb on + strand at 795.798 kb on + strand at 795.798 kb on + strand at 795.798 kb on + strand at 795.799 kb on - strand at 795.799 kb on - strand at 795.799 kb on - strand at 795.799 kb on - strand at 795.799 kb on - strand at 795.799 kb on - strand at 795.799 kb on - strand at 795.799 kb on - strand at 795.799 kb on - strand at 795.799 kb on - strand at 795.799 kb on - strand at 795.801 kb on + strand at 795.801 kb on + strand at 795.802 kb on - strand at 795.802 kb on - strand at 795.802 kb on - strand at 795.802 kb on - strand at 795.942 kb on + strand at 795.942 kb on + strand at 795.942 kb on + strand at 795.942 kb on + strand at 796.160 kb on + strand, within MPMX19_05261 at 796.160 kb on + strand, within MPMX19_05261 at 796.161 kb on - strand, within MPMX19_05261 at 796.622 kb on + strand, within MPMX19_05261 at 796.622 kb on + strand, within MPMX19_05261 at 796.622 kb on + strand, within MPMX19_05261 at 796.622 kb on + strand, within MPMX19_05261 at 796.622 kb on + strand, within MPMX19_05261 at 796.623 kb on - strand, within MPMX19_05261 at 796.623 kb on - strand, within MPMX19_05261 at 796.623 kb on - strand, within MPMX19_05261 at 796.623 kb on - strand, within MPMX19_05261 at 796.623 kb on - strand, within MPMX19_05261 at 796.623 kb on - strand, within MPMX19_05261 at 796.623 kb on - strand, within MPMX19_05261 at 796.712 kb on + strand, within MPMX19_05261 at 796.712 kb on + strand, within MPMX19_05261 at 796.713 kb on - strand, within MPMX19_05261 at 796.713 kb on - strand, within MPMX19_05261 at 796.713 kb on - strand, within MPMX19_05261 at 796.713 kb on - strand, within MPMX19_05261 at 796.754 kb on + strand, within MPMX19_05261 at 796.755 kb on - strand, within MPMX19_05261 at 797.158 kb on - strand at 797.158 kb on - strand at 797.158 kb on - strand at 797.158 kb on - strand at 797.159 kb on - strand at 797.185 kb on + strand at 797.186 kb on - strand at 797.186 kb on - strand at 797.186 kb on - strand at 797.190 kb on + strand at 797.190 kb on + strand at 797.191 kb on - strand at 797.191 kb on - strand at 797.191 kb on - strand at 797.197 kb on - strand at 797.204 kb on + strand at 797.205 kb on - strand at 797.205 kb on - strand at 797.239 kb on + strand at 797.240 kb on - strand at 797.240 kb on - strand at 797.240 kb on - strand at 797.351 kb on - strand, within MPMX19_05262 at 797.410 kb on + strand, within MPMX19_05262 at 797.410 kb on + strand, within MPMX19_05262 at 797.410 kb on + strand, within MPMX19_05262 at 797.410 kb on + strand, within MPMX19_05262 at 797.411 kb on - strand, within MPMX19_05262 at 797.411 kb on - strand, within MPMX19_05262 at 797.411 kb on - strand, within MPMX19_05262 at 797.411 kb on - strand, within MPMX19_05262 at 797.411 kb on - strand, within MPMX19_05262 at 797.411 kb on - strand, within MPMX19_05262 at 797.411 kb on - strand, within MPMX19_05262 at 797.440 kb on + strand, within MPMX19_05262 at 797.440 kb on + strand, within MPMX19_05262 at 797.440 kb on + strand, within MPMX19_05262 at 797.440 kb on + strand, within MPMX19_05262 at 797.440 kb on + strand, within MPMX19_05262 at 797.440 kb on + strand, within MPMX19_05262 at 797.440 kb on + strand, within MPMX19_05262 at 797.440 kb on + strand, within MPMX19_05262 at 797.440 kb on + strand, within MPMX19_05262 at 797.441 kb on - strand, within MPMX19_05262 at 797.441 kb on - strand, within MPMX19_05262 at 797.441 kb on - strand, within MPMX19_05262 at 797.441 kb on - strand, within MPMX19_05262 at 797.638 kb on + strand, within MPMX19_05262 at 797.638 kb on + strand, within MPMX19_05262 at 797.639 kb on - strand, within MPMX19_05262 at 797.639 kb on - strand, within MPMX19_05262 at 797.639 kb on - strand, within MPMX19_05262 at 797.776 kb on + strand, within MPMX19_05262 at 797.776 kb on + strand, within MPMX19_05262 at 797.776 kb on + strand, within MPMX19_05262 at 797.777 kb on - strand, within MPMX19_05262 at 797.777 kb on - strand, within MPMX19_05262 at 797.789 kb on + strand, within MPMX19_05262 at 797.789 kb on + strand, within MPMX19_05262 at 797.789 kb on + strand, within MPMX19_05262 at 797.790 kb on - strand, within MPMX19_05262 at 797.888 kb on + strand at 797.889 kb on - strand at 797.903 kb on + strand at 797.903 kb on + strand at 797.903 kb on + strand at 797.904 kb on - strand at 798.062 kb on + strand, within MPMX19_05263 at 798.063 kb on - strand, within MPMX19_05263 at 798.063 kb on - strand, within MPMX19_05263 at 798.063 kb on - strand, within MPMX19_05263 at 798.080 kb on + strand, within MPMX19_05263 at 798.080 kb on + strand, within MPMX19_05263 at 798.081 kb on - strand, within MPMX19_05263 at 798.081 kb on - strand, within MPMX19_05263 at 798.081 kb on - strand, within MPMX19_05263
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 795,204 + MPMX19_05260 0.73 -0.3 795,204 + MPMX19_05260 0.73 -0.2 795,205 - MPMX19_05260 0.73 -0.4 795,205 - MPMX19_05260 0.73 +0.2 795,205 - MPMX19_05260 0.73 -0.8 795,205 - MPMX19_05260 0.73 -0.9 795,205 - MPMX19_05260 0.73 -2.5 795,216 + MPMX19_05260 0.74 -0.2 795,216 + MPMX19_05260 0.74 +0.4 795,216 + MPMX19_05260 0.74 -1.0 795,216 + MPMX19_05260 0.74 -1.3 795,216 + MPMX19_05260 0.74 -0.6 795,217 - MPMX19_05260 0.74 -0.5 795,234 + MPMX19_05260 0.74 +0.0 795,234 + MPMX19_05260 0.74 -0.8 795,234 + MPMX19_05260 0.74 +0.4 795,234 + MPMX19_05260 0.74 -0.4 795,235 - MPMX19_05260 0.74 +0.3 795,235 - MPMX19_05260 0.74 +0.3 795,345 + MPMX19_05260 0.78 +0.0 795,345 + MPMX19_05260 0.78 +1.6 795,345 + MPMX19_05260 0.78 -2.3 795,345 + MPMX19_05260 0.78 -1.2 795,345 + MPMX19_05260 0.78 -0.2 795,345 + MPMX19_05260 0.78 -1.7 795,345 + MPMX19_05260 0.78 -0.8 795,346 - MPMX19_05260 0.78 -0.6 795,346 - MPMX19_05260 0.78 -0.0 795,346 - MPMX19_05260 0.78 -0.6 795,346 - MPMX19_05260 0.78 -0.4 795,346 - MPMX19_05260 0.78 -1.6 795,346 - MPMX19_05260 0.78 -0.9 795,346 - MPMX19_05260 0.78 -1.3 795,346 - MPMX19_05260 0.78 -0.6 795,346 - MPMX19_05260 0.78 -0.1 795,346 - MPMX19_05260 0.78 -0.6 795,346 - MPMX19_05260 0.78 +0.2 795,471 + MPMX19_05260 0.82 -0.8 795,471 + MPMX19_05260 0.82 -1.3 795,471 + MPMX19_05260 0.82 -0.8 795,471 + MPMX19_05260 0.82 -2.1 795,471 + MPMX19_05260 0.82 +1.4 795,472 - MPMX19_05260 0.82 -1.3 795,472 - MPMX19_05260 0.82 -1.2 795,472 - MPMX19_05260 0.82 -1.1 795,472 - MPMX19_05260 0.82 +0.4 795,472 - MPMX19_05260 0.82 +0.8 795,472 - MPMX19_05260 0.82 -2.1 795,472 - MPMX19_05260 0.82 -0.3 795,472 - MPMX19_05260 0.82 -0.6 795,600 + MPMX19_05260 0.86 -1.8 795,600 + MPMX19_05260 0.86 +0.0 795,600 + MPMX19_05260 0.86 -0.3 795,600 + MPMX19_05260 0.86 -2.3 795,600 + MPMX19_05260 0.86 +0.6 795,600 + MPMX19_05260 0.86 -0.1 795,601 - MPMX19_05260 0.86 -0.1 795,601 - MPMX19_05260 0.86 -0.1 795,601 - MPMX19_05260 0.86 -0.3 795,601 - MPMX19_05260 0.86 -0.4 795,601 - MPMX19_05260 0.86 +0.0 795,601 - MPMX19_05260 0.86 -0.5 795,601 - MPMX19_05260 0.86 -0.6 795,601 - MPMX19_05260 0.86 +0.7 795,605 - MPMX19_05260 0.86 -0.2 795,605 - MPMX19_05260 0.86 +0.3 795,612 + MPMX19_05260 0.86 -1.3 795,612 + MPMX19_05260 0.86 -0.2 795,613 - MPMX19_05260 0.86 +0.2 795,613 - MPMX19_05260 0.86 -1.3 795,669 + MPMX19_05260 0.88 +0.4 795,670 - MPMX19_05260 0.88 +1.0 795,670 - MPMX19_05260 0.88 -0.8 795,702 + MPMX19_05260 0.89 -1.3 795,703 - MPMX19_05260 0.89 -1.6 795,703 - MPMX19_05260 0.89 -1.0 795,780 + -0.1 795,780 + +0.0 795,780 + -1.0 795,780 + -1.1 795,780 + -1.3 795,781 - -0.9 795,781 - -1.2 795,781 - +2.0 795,798 + -0.3 795,798 + -0.3 795,798 + -0.6 795,798 + -0.5 795,798 + -1.1 795,798 + +0.2 795,798 + -0.5 795,798 + -1.3 795,799 - +0.2 795,799 - -0.6 795,799 - -1.6 795,799 - -0.1 795,799 - -2.2 795,799 - +1.2 795,799 - -2.1 795,799 - +0.2 795,799 - -0.1 795,799 - -1.4 795,799 - -0.0 795,801 + -1.6 795,801 + -0.4 795,802 - -0.3 795,802 - -0.1 795,802 - +0.4 795,802 - -1.3 795,942 + -0.1 795,942 + +0.3 795,942 + +0.8 795,942 + -0.3 796,160 + MPMX19_05261 0.11 +0.8 796,160 + MPMX19_05261 0.11 -1.8 796,161 - MPMX19_05261 0.11 -1.1 796,622 + MPMX19_05261 0.52 -0.1 796,622 + MPMX19_05261 0.52 -1.7 796,622 + MPMX19_05261 0.52 -0.3 796,622 + MPMX19_05261 0.52 +0.3 796,622 + MPMX19_05261 0.52 -1.8 796,623 - MPMX19_05261 0.52 -0.2 796,623 - MPMX19_05261 0.52 -1.1 796,623 - MPMX19_05261 0.52 -1.1 796,623 - MPMX19_05261 0.52 -0.6 796,623 - MPMX19_05261 0.52 -0.4 796,623 - MPMX19_05261 0.52 -0.4 796,623 - MPMX19_05261 0.52 -0.3 796,712 + MPMX19_05261 0.60 -0.1 796,712 + MPMX19_05261 0.60 -0.2 796,713 - MPMX19_05261 0.60 +0.2 796,713 - MPMX19_05261 0.60 -1.7 796,713 - MPMX19_05261 0.60 +0.2 796,713 - MPMX19_05261 0.60 -0.6 796,754 + MPMX19_05261 0.64 -0.8 796,755 - MPMX19_05261 0.64 -0.6 797,158 - -1.3 797,158 - -0.6 797,158 - -1.6 797,158 - -0.2 797,159 - +0.4 797,185 + +0.4 797,186 - +0.4 797,186 - -1.0 797,186 - -0.8 797,190 + -1.1 797,190 + +1.0 797,191 - -0.3 797,191 - -1.0 797,191 - -1.7 797,197 - -0.0 797,204 + -0.2 797,205 - -0.3 797,205 - -0.6 797,239 + -0.8 797,240 - -0.6 797,240 - -0.8 797,240 - -0.0 797,351 - MPMX19_05262 0.16 -1.3 797,410 + MPMX19_05262 0.26 -1.1 797,410 + MPMX19_05262 0.26 -1.0 797,410 + MPMX19_05262 0.26 -2.0 797,410 + MPMX19_05262 0.26 -1.0 797,411 - MPMX19_05262 0.26 +0.0 797,411 - MPMX19_05262 0.26 -0.1 797,411 - MPMX19_05262 0.26 +0.2 797,411 - MPMX19_05262 0.26 +0.0 797,411 - MPMX19_05262 0.26 -0.9 797,411 - MPMX19_05262 0.26 -0.6 797,411 - MPMX19_05262 0.26 -0.8 797,440 + MPMX19_05262 0.30 -0.5 797,440 + MPMX19_05262 0.30 -2.1 797,440 + MPMX19_05262 0.30 -2.4 797,440 + MPMX19_05262 0.30 +0.2 797,440 + MPMX19_05262 0.30 -1.1 797,440 + MPMX19_05262 0.30 -1.4 797,440 + MPMX19_05262 0.30 -0.6 797,440 + MPMX19_05262 0.30 -0.8 797,440 + MPMX19_05262 0.30 +0.0 797,441 - MPMX19_05262 0.30 +0.0 797,441 - MPMX19_05262 0.30 -1.3 797,441 - MPMX19_05262 0.30 -2.6 797,441 - MPMX19_05262 0.30 +1.4 797,638 + MPMX19_05262 0.62 +0.0 797,638 + MPMX19_05262 0.62 -0.7 797,639 - MPMX19_05262 0.62 -0.1 797,639 - MPMX19_05262 0.62 -1.3 797,639 - MPMX19_05262 0.62 -0.7 797,776 + MPMX19_05262 0.83 -2.2 797,776 + MPMX19_05262 0.83 +0.4 797,776 + MPMX19_05262 0.83 -1.7 797,777 - MPMX19_05262 0.84 +0.1 797,777 - MPMX19_05262 0.84 -1.0 797,789 + MPMX19_05262 0.85 -1.3 797,789 + MPMX19_05262 0.85 +0.4 797,789 + MPMX19_05262 0.85 -0.2 797,790 - MPMX19_05262 0.86 -0.3 797,888 + +0.0 797,889 - +0.6 797,903 + +1.3 797,903 + -1.7 797,903 + -1.2 797,904 - +0.4 798,062 + MPMX19_05263 0.12 -0.1 798,063 - MPMX19_05263 0.12 -0.2 798,063 - MPMX19_05263 0.12 +1.0 798,063 - MPMX19_05263 0.12 -1.1 798,080 + MPMX19_05263 0.14 -0.4 798,080 + MPMX19_05263 0.14 -0.6 798,081 - MPMX19_05263 0.14 -1.7 798,081 - MPMX19_05263 0.14 +0.8 798,081 - MPMX19_05263 0.14 -0.6
Or see this region's nucleotide sequence