Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04010 and MPMX19_04011 are separated by 91 nucleotides MPMX19_04011 and MPMX19_04012 are separated by 33 nucleotides MPMX19_04012 and MPMX19_04013 are separated by 84 nucleotides
MPMX19_04010: MPMX19_04010 - Isoaspartyl peptidase, at 306,430 to 307,401
_04010
MPMX19_04011: MPMX19_04011 - Zinc-type alcohol dehydrogenase-like protein, at 307,493 to 308,443
_04011
MPMX19_04012: MPMX19_04012 - hypothetical protein, at 308,477 to 308,902
_04012
MPMX19_04013: MPMX19_04013 - hypothetical protein, at 308,987 to 309,466
_04013
Position (kb) 307
308
309 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 306.871 kb on + strand, within MPMX19_04010 at 306.871 kb on + strand, within MPMX19_04010 at 306.872 kb on - strand, within MPMX19_04010 at 306.872 kb on - strand, within MPMX19_04010 at 306.872 kb on - strand, within MPMX19_04010 at 306.872 kb on - strand, within MPMX19_04010 at 307.330 kb on + strand at 307.331 kb on - strand at 307.331 kb on - strand at 307.679 kb on + strand, within MPMX19_04011 at 307.679 kb on + strand, within MPMX19_04011 at 307.679 kb on + strand, within MPMX19_04011 at 307.680 kb on - strand, within MPMX19_04011 at 307.751 kb on + strand, within MPMX19_04011 at 307.751 kb on + strand, within MPMX19_04011 at 307.751 kb on + strand, within MPMX19_04011 at 307.751 kb on + strand, within MPMX19_04011 at 307.751 kb on + strand, within MPMX19_04011 at 307.751 kb on + strand, within MPMX19_04011 at 307.751 kb on + strand, within MPMX19_04011 at 307.751 kb on + strand, within MPMX19_04011 at 307.751 kb on + strand, within MPMX19_04011 at 307.751 kb on + strand, within MPMX19_04011 at 307.751 kb on + strand, within MPMX19_04011 at 307.752 kb on - strand, within MPMX19_04011 at 307.752 kb on - strand, within MPMX19_04011 at 307.752 kb on - strand, within MPMX19_04011 at 307.752 kb on - strand, within MPMX19_04011 at 307.752 kb on - strand, within MPMX19_04011 at 307.752 kb on - strand, within MPMX19_04011 at 307.752 kb on - strand, within MPMX19_04011 at 307.752 kb on - strand, within MPMX19_04011 at 307.752 kb on - strand, within MPMX19_04011 at 307.752 kb on - strand, within MPMX19_04011 at 307.752 kb on - strand, within MPMX19_04011 at 307.752 kb on - strand, within MPMX19_04011 at 307.752 kb on - strand, within MPMX19_04011 at 307.752 kb on - strand, within MPMX19_04011 at 307.752 kb on - strand, within MPMX19_04011 at 307.787 kb on + strand, within MPMX19_04011 at 307.787 kb on + strand, within MPMX19_04011 at 307.787 kb on + strand, within MPMX19_04011 at 307.787 kb on + strand, within MPMX19_04011 at 307.787 kb on + strand, within MPMX19_04011 at 307.788 kb on - strand, within MPMX19_04011 at 307.788 kb on - strand, within MPMX19_04011 at 307.788 kb on - strand, within MPMX19_04011 at 307.788 kb on - strand, within MPMX19_04011 at 307.788 kb on - strand, within MPMX19_04011 at 307.796 kb on + strand, within MPMX19_04011 at 307.796 kb on + strand, within MPMX19_04011 at 307.796 kb on + strand, within MPMX19_04011 at 307.796 kb on + strand, within MPMX19_04011 at 307.796 kb on + strand, within MPMX19_04011 at 307.796 kb on + strand, within MPMX19_04011 at 307.796 kb on + strand, within MPMX19_04011 at 307.797 kb on - strand, within MPMX19_04011 at 307.797 kb on - strand, within MPMX19_04011 at 307.797 kb on - strand, within MPMX19_04011 at 307.797 kb on - strand, within MPMX19_04011 at 307.797 kb on - strand, within MPMX19_04011 at 307.797 kb on - strand, within MPMX19_04011 at 307.797 kb on - strand, within MPMX19_04011 at 307.797 kb on - strand, within MPMX19_04011 at 307.797 kb on - strand, within MPMX19_04011 at 307.797 kb on - strand, within MPMX19_04011 at 308.075 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.264 kb on + strand, within MPMX19_04011 at 308.264 kb on + strand, within MPMX19_04011 at 308.265 kb on - strand, within MPMX19_04011 at 308.416 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.494 kb on + strand at 308.897 kb on + strand at 308.897 kb on + strand at 308.898 kb on - strand at 308.898 kb on - strand at 308.909 kb on + strand at 308.909 kb on + strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 309.053 kb on + strand, within MPMX19_04013 at 309.053 kb on + strand, within MPMX19_04013 at 309.053 kb on + strand, within MPMX19_04013 at 309.053 kb on + strand, within MPMX19_04013 at 309.054 kb on - strand, within MPMX19_04013 at 309.054 kb on - strand, within MPMX19_04013 at 309.054 kb on - strand, within MPMX19_04013 at 309.260 kb on + strand, within MPMX19_04013 at 309.261 kb on - strand, within MPMX19_04013 at 309.261 kb on - strand, within MPMX19_04013
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 306,871 + MPMX19_04010 0.45 -1.3 306,871 + MPMX19_04010 0.45 -0.8 306,872 - MPMX19_04010 0.45 -0.7 306,872 - MPMX19_04010 0.45 -0.5 306,872 - MPMX19_04010 0.45 -0.7 306,872 - MPMX19_04010 0.45 -1.7 307,330 + +1.3 307,331 - -0.7 307,331 - +0.3 307,679 + MPMX19_04011 0.20 -0.3 307,679 + MPMX19_04011 0.20 -0.1 307,679 + MPMX19_04011 0.20 -2.0 307,680 - MPMX19_04011 0.20 -0.7 307,751 + MPMX19_04011 0.27 -0.8 307,751 + MPMX19_04011 0.27 +0.2 307,751 + MPMX19_04011 0.27 -0.3 307,751 + MPMX19_04011 0.27 +1.2 307,751 + MPMX19_04011 0.27 -0.6 307,751 + MPMX19_04011 0.27 +0.3 307,751 + MPMX19_04011 0.27 -0.5 307,751 + MPMX19_04011 0.27 -1.0 307,751 + MPMX19_04011 0.27 -0.6 307,751 + MPMX19_04011 0.27 -1.8 307,751 + MPMX19_04011 0.27 -1.5 307,752 - MPMX19_04011 0.27 -2.3 307,752 - MPMX19_04011 0.27 +0.6 307,752 - MPMX19_04011 0.27 -1.5 307,752 - MPMX19_04011 0.27 -1.3 307,752 - MPMX19_04011 0.27 +0.2 307,752 - MPMX19_04011 0.27 +0.6 307,752 - MPMX19_04011 0.27 -2.1 307,752 - MPMX19_04011 0.27 -1.8 307,752 - MPMX19_04011 0.27 +0.6 307,752 - MPMX19_04011 0.27 -1.0 307,752 - MPMX19_04011 0.27 +0.8 307,752 - MPMX19_04011 0.27 -2.2 307,752 - MPMX19_04011 0.27 -1.2 307,752 - MPMX19_04011 0.27 +0.6 307,752 - MPMX19_04011 0.27 -1.2 307,787 + MPMX19_04011 0.31 +0.2 307,787 + MPMX19_04011 0.31 +0.7 307,787 + MPMX19_04011 0.31 -1.8 307,787 + MPMX19_04011 0.31 -0.5 307,787 + MPMX19_04011 0.31 +0.3 307,788 - MPMX19_04011 0.31 -0.6 307,788 - MPMX19_04011 0.31 -0.8 307,788 - MPMX19_04011 0.31 -1.2 307,788 - MPMX19_04011 0.31 +0.0 307,788 - MPMX19_04011 0.31 -0.4 307,796 + MPMX19_04011 0.32 -0.4 307,796 + MPMX19_04011 0.32 -3.1 307,796 + MPMX19_04011 0.32 -0.4 307,796 + MPMX19_04011 0.32 +2.2 307,796 + MPMX19_04011 0.32 +0.5 307,796 + MPMX19_04011 0.32 -0.2 307,796 + MPMX19_04011 0.32 -0.6 307,797 - MPMX19_04011 0.32 -0.0 307,797 - MPMX19_04011 0.32 +0.6 307,797 - MPMX19_04011 0.32 +0.5 307,797 - MPMX19_04011 0.32 -0.6 307,797 - MPMX19_04011 0.32 -0.4 307,797 - MPMX19_04011 0.32 +1.4 307,797 - MPMX19_04011 0.32 +0.8 307,797 - MPMX19_04011 0.32 -0.9 307,797 - MPMX19_04011 0.32 -1.3 307,797 - MPMX19_04011 0.32 +0.6 308,075 + MPMX19_04011 0.61 -1.0 308,243 + MPMX19_04011 0.79 -1.2 308,243 + MPMX19_04011 0.79 -0.7 308,243 + MPMX19_04011 0.79 +0.8 308,243 + MPMX19_04011 0.79 -1.5 308,243 + MPMX19_04011 0.79 -0.3 308,243 + MPMX19_04011 0.79 -0.4 308,243 + MPMX19_04011 0.79 -0.4 308,243 + MPMX19_04011 0.79 -0.5 308,243 + MPMX19_04011 0.79 -2.4 308,243 + MPMX19_04011 0.79 +1.2 308,243 + MPMX19_04011 0.79 -1.3 308,243 + MPMX19_04011 0.79 -0.7 308,243 + MPMX19_04011 0.79 -2.5 308,243 + MPMX19_04011 0.79 -0.8 308,244 - MPMX19_04011 0.79 -0.2 308,244 - MPMX19_04011 0.79 -0.4 308,244 - MPMX19_04011 0.79 -1.9 308,244 - MPMX19_04011 0.79 -0.8 308,244 - MPMX19_04011 0.79 -1.3 308,244 - MPMX19_04011 0.79 -1.0 308,244 - MPMX19_04011 0.79 -0.4 308,244 - MPMX19_04011 0.79 -0.1 308,244 - MPMX19_04011 0.79 -0.2 308,244 - MPMX19_04011 0.79 -0.2 308,244 - MPMX19_04011 0.79 +0.3 308,244 - MPMX19_04011 0.79 -1.2 308,244 - MPMX19_04011 0.79 -2.9 308,244 - MPMX19_04011 0.79 -1.5 308,244 - MPMX19_04011 0.79 -0.3 308,244 - MPMX19_04011 0.79 -1.0 308,244 - MPMX19_04011 0.79 -2.8 308,264 + MPMX19_04011 0.81 -0.3 308,264 + MPMX19_04011 0.81 -0.5 308,265 - MPMX19_04011 0.81 -0.5 308,416 + +0.9 308,483 + +0.4 308,483 + -0.6 308,483 + -0.8 308,483 + +1.6 308,483 + -0.1 308,483 + -1.7 308,483 + -0.5 308,483 + -1.8 308,483 + -0.2 308,483 + -0.4 308,483 + -0.5 308,483 + -0.5 308,483 + +0.7 308,483 + -1.5 308,483 + -0.8 308,483 + -0.4 308,483 + -0.7 308,483 + -1.0 308,483 + -1.1 308,483 + -0.4 308,483 + -0.7 308,483 + -0.3 308,483 + -0.8 308,483 + +0.8 308,483 + -0.4 308,483 + -0.2 308,483 + -1.0 308,484 - -0.1 308,484 - -1.3 308,484 - -0.7 308,484 - -2.0 308,484 - +0.6 308,484 - -1.8 308,484 - -0.7 308,484 - -1.5 308,484 - -2.2 308,484 - -0.8 308,484 - +0.3 308,484 - -0.1 308,484 - -2.2 308,484 - -1.0 308,484 - -0.9 308,484 - +0.7 308,484 - -1.4 308,484 - -0.5 308,484 - -0.4 308,485 + +1.2 308,485 + +0.2 308,485 + -0.3 308,485 + -0.6 308,485 + +0.3 308,485 + -0.5 308,485 + +0.2 308,485 + +1.2 308,485 + +0.2 308,485 + -0.5 308,485 + -0.4 308,485 + -0.4 308,485 + -1.1 308,485 + -0.2 308,485 + +1.4 308,486 - -0.8 308,486 - -0.2 308,486 - -0.8 308,486 - -2.7 308,486 - +0.7 308,486 - +1.4 308,486 - -1.9 308,486 - -0.5 308,486 - -0.0 308,486 - +0.7 308,486 - +0.2 308,486 - -0.5 308,486 - -0.0 308,486 - -0.5 308,486 - +0.7 308,486 - -1.2 308,486 - +0.2 308,494 + -0.4 308,897 + +0.4 308,897 + +0.1 308,898 - -1.2 308,898 - +0.8 308,909 + +0.3 308,909 + -1.1 308,910 - -0.4 308,910 - +0.2 308,910 - -0.3 308,910 - +1.2 308,910 - -0.3 308,910 - +1.9 308,910 - -1.8 308,910 - -1.4 308,910 - -0.4 308,910 - -0.8 308,910 - -2.3 308,910 - -0.3 308,910 - -1.7 309,053 + MPMX19_04013 0.14 -0.9 309,053 + MPMX19_04013 0.14 -0.7 309,053 + MPMX19_04013 0.14 -2.0 309,053 + MPMX19_04013 0.14 -1.2 309,054 - MPMX19_04013 0.14 -0.7 309,054 - MPMX19_04013 0.14 +0.6 309,054 - MPMX19_04013 0.14 -0.7 309,260 + MPMX19_04013 0.57 -0.9 309,261 - MPMX19_04013 0.57 -1.3 309,261 - MPMX19_04013 0.57 -1.0
Or see this region's nucleotide sequence