Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03972 and MPMX19_03973 are separated by 147 nucleotides MPMX19_03973 and MPMX19_03974 are separated by 132 nucleotides
MPMX19_03972: MPMX19_03972 - Enolase, at 261,863 to 263,140
_03972
MPMX19_03973: MPMX19_03973 - Esterase YbfF, at 263,288 to 264,070
_03973
MPMX19_03974: MPMX19_03974 - putative lipid II flippase MurJ, at 264,203 to 265,753
_03974
Position (kb) 263
264
265 Strain fitness (log2 ratio) -2
-1
0
1
2 at 262.381 kb on - strand, within MPMX19_03972 at 262.381 kb on - strand, within MPMX19_03972 at 262.381 kb on - strand, within MPMX19_03972 at 262.381 kb on - strand, within MPMX19_03972 at 262.914 kb on + strand, within MPMX19_03972 at 262.914 kb on + strand, within MPMX19_03972 at 262.914 kb on + strand, within MPMX19_03972 at 262.914 kb on + strand, within MPMX19_03972 at 262.914 kb on + strand, within MPMX19_03972 at 262.914 kb on + strand, within MPMX19_03972 at 262.914 kb on + strand, within MPMX19_03972 at 262.914 kb on + strand, within MPMX19_03972 at 262.914 kb on + strand, within MPMX19_03972 at 262.915 kb on - strand, within MPMX19_03972 at 262.915 kb on - strand, within MPMX19_03972 at 262.915 kb on - strand, within MPMX19_03972 at 262.915 kb on - strand, within MPMX19_03972 at 262.915 kb on - strand, within MPMX19_03972 at 262.915 kb on - strand, within MPMX19_03972 at 263.194 kb on + strand at 263.194 kb on + strand at 263.195 kb on - strand at 263.195 kb on - strand at 263.212 kb on + strand at 263.213 kb on - strand at 263.224 kb on - strand at 263.224 kb on - strand at 263.237 kb on + strand at 263.237 kb on + strand at 263.237 kb on + strand at 263.237 kb on + strand at 263.237 kb on + strand at 263.237 kb on + strand at 263.237 kb on + strand at 263.237 kb on + strand at 263.238 kb on - strand at 263.238 kb on - strand at 263.238 kb on - strand at 263.238 kb on - strand at 263.238 kb on - strand at 263.251 kb on + strand at 263.251 kb on + strand at 263.251 kb on + strand at 263.251 kb on + strand at 263.251 kb on + strand at 263.251 kb on + strand at 263.252 kb on - strand at 263.252 kb on - strand at 263.252 kb on - strand at 263.252 kb on - strand at 263.252 kb on - strand at 263.252 kb on - strand at 263.252 kb on - strand at 263.424 kb on + strand, within MPMX19_03973 at 263.424 kb on + strand, within MPMX19_03973 at 263.424 kb on + strand, within MPMX19_03973 at 263.424 kb on + strand, within MPMX19_03973 at 263.424 kb on + strand, within MPMX19_03973 at 263.425 kb on - strand, within MPMX19_03973 at 263.425 kb on - strand, within MPMX19_03973 at 263.425 kb on - strand, within MPMX19_03973 at 263.425 kb on - strand, within MPMX19_03973 at 263.425 kb on - strand, within MPMX19_03973 at 263.425 kb on - strand, within MPMX19_03973 at 263.425 kb on - strand, within MPMX19_03973 at 263.466 kb on + strand, within MPMX19_03973 at 263.706 kb on + strand, within MPMX19_03973 at 263.706 kb on + strand, within MPMX19_03973 at 263.706 kb on + strand, within MPMX19_03973 at 263.706 kb on + strand, within MPMX19_03973 at 263.706 kb on + strand, within MPMX19_03973 at 263.706 kb on + strand, within MPMX19_03973 at 263.706 kb on + strand, within MPMX19_03973 at 263.706 kb on + strand, within MPMX19_03973 at 263.706 kb on + strand, within MPMX19_03973 at 263.706 kb on + strand, within MPMX19_03973 at 263.706 kb on + strand, within MPMX19_03973 at 263.706 kb on + strand, within MPMX19_03973 at 263.707 kb on - strand, within MPMX19_03973 at 263.707 kb on - strand, within MPMX19_03973 at 263.707 kb on - strand, within MPMX19_03973 at 263.707 kb on - strand, within MPMX19_03973 at 263.707 kb on - strand, within MPMX19_03973 at 263.707 kb on - strand, within MPMX19_03973 at 263.707 kb on - strand, within MPMX19_03973 at 263.707 kb on - strand, within MPMX19_03973 at 263.707 kb on - strand, within MPMX19_03973 at 263.707 kb on - strand, within MPMX19_03973 at 263.707 kb on - strand, within MPMX19_03973 at 263.707 kb on - strand, within MPMX19_03973 at 263.707 kb on - strand, within MPMX19_03973 at 263.707 kb on - strand, within MPMX19_03973 at 263.707 kb on - strand, within MPMX19_03973 at 263.871 kb on + strand, within MPMX19_03973 at 263.871 kb on + strand, within MPMX19_03973 at 263.872 kb on - strand, within MPMX19_03973 at 263.872 kb on - strand, within MPMX19_03973 at 263.925 kb on + strand, within MPMX19_03973 at 263.925 kb on + strand, within MPMX19_03973 at 263.925 kb on + strand, within MPMX19_03973 at 263.925 kb on + strand, within MPMX19_03973 at 263.925 kb on + strand, within MPMX19_03973 at 263.926 kb on - strand, within MPMX19_03973 at 263.926 kb on - strand, within MPMX19_03973 at 263.926 kb on - strand, within MPMX19_03973 at 263.926 kb on - strand, within MPMX19_03973 at 263.926 kb on - strand, within MPMX19_03973 at 263.926 kb on - strand, within MPMX19_03973 at 264.042 kb on + strand at 264.042 kb on + strand at 264.042 kb on + strand at 264.042 kb on + strand at 264.043 kb on - strand at 264.043 kb on - strand at 264.043 kb on - strand at 264.043 kb on - strand at 264.043 kb on - strand at 264.043 kb on - strand at 264.043 kb on - strand at 264.043 kb on - strand at 264.132 kb on + strand at 264.132 kb on + strand at 264.132 kb on + strand at 264.132 kb on + strand at 264.132 kb on + strand at 264.133 kb on - strand at 264.133 kb on - strand at 264.133 kb on - strand at 264.133 kb on - strand at 264.133 kb on - strand at 264.155 kb on + strand at 264.155 kb on + strand at 264.155 kb on + strand at 264.155 kb on + strand at 264.155 kb on + strand at 264.156 kb on - strand at 264.156 kb on - strand at 264.156 kb on - strand at 264.156 kb on - strand at 264.214 kb on + strand at 264.214 kb on + strand at 264.214 kb on + strand at 264.215 kb on - strand at 264.215 kb on - strand at 264.215 kb on - strand at 264.215 kb on - strand at 264.215 kb on - strand at 264.215 kb on - strand at 264.215 kb on - strand at 264.426 kb on + strand, within MPMX19_03974 at 264.426 kb on + strand, within MPMX19_03974 at 264.426 kb on + strand, within MPMX19_03974 at 264.426 kb on + strand, within MPMX19_03974 at 264.427 kb on - strand, within MPMX19_03974 at 264.427 kb on - strand, within MPMX19_03974 at 264.605 kb on + strand, within MPMX19_03974 at 264.605 kb on + strand, within MPMX19_03974 at 264.605 kb on + strand, within MPMX19_03974 at 264.606 kb on - strand, within MPMX19_03974 at 264.606 kb on - strand, within MPMX19_03974 at 264.635 kb on + strand, within MPMX19_03974 at 264.636 kb on - strand, within MPMX19_03974 at 264.636 kb on - strand, within MPMX19_03974 at 264.636 kb on - strand, within MPMX19_03974 at 264.636 kb on - strand, within MPMX19_03974 at 264.636 kb on - strand, within MPMX19_03974 at 264.803 kb on + strand, within MPMX19_03974 at 264.803 kb on + strand, within MPMX19_03974 at 264.803 kb on + strand, within MPMX19_03974 at 264.804 kb on - strand, within MPMX19_03974 at 264.804 kb on - strand, within MPMX19_03974 at 264.804 kb on - strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.987 kb on - strand, within MPMX19_03974 at 264.987 kb on - strand, within MPMX19_03974 at 264.987 kb on - strand, within MPMX19_03974 at 264.987 kb on - strand, within MPMX19_03974 at 264.987 kb on - strand, within MPMX19_03974 at 264.987 kb on - strand, within MPMX19_03974 at 264.987 kb on - strand, within MPMX19_03974 at 264.987 kb on - strand, within MPMX19_03974 at 264.987 kb on - strand, within MPMX19_03974 at 264.987 kb on - strand, within MPMX19_03974 at 264.987 kb on - strand, within MPMX19_03974 at 264.992 kb on + strand, within MPMX19_03974 at 264.992 kb on + strand, within MPMX19_03974 at 264.992 kb on + strand, within MPMX19_03974 at 264.992 kb on + strand, within MPMX19_03974 at 264.992 kb on + strand, within MPMX19_03974 at 264.992 kb on + strand, within MPMX19_03974 at 264.992 kb on + strand, within MPMX19_03974 at 264.993 kb on - strand, within MPMX19_03974 at 264.993 kb on - strand, within MPMX19_03974 at 264.993 kb on - strand, within MPMX19_03974 at 264.993 kb on - strand, within MPMX19_03974 at 264.993 kb on - strand, within MPMX19_03974 at 264.993 kb on - strand, within MPMX19_03974 at 264.993 kb on - strand, within MPMX19_03974 at 264.993 kb on - strand, within MPMX19_03974 at 264.993 kb on - strand, within MPMX19_03974 at 264.993 kb on - strand, within MPMX19_03974 at 264.993 kb on - strand, within MPMX19_03974 at 264.993 kb on - strand, within MPMX19_03974 at 264.995 kb on + strand, within MPMX19_03974 at 264.995 kb on + strand, within MPMX19_03974 at 264.995 kb on + strand, within MPMX19_03974 at 264.995 kb on + strand, within MPMX19_03974 at 264.995 kb on + strand, within MPMX19_03974 at 264.995 kb on + strand, within MPMX19_03974 at 264.995 kb on + strand, within MPMX19_03974 at 264.996 kb on - strand, within MPMX19_03974 at 264.996 kb on - strand, within MPMX19_03974 at 264.996 kb on - strand, within MPMX19_03974 at 264.996 kb on - strand, within MPMX19_03974 at 264.996 kb on - strand, within MPMX19_03974 at 264.996 kb on - strand, within MPMX19_03974 at 264.996 kb on - strand, within MPMX19_03974
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 262,381 - MPMX19_03972 0.41 +0.3 262,381 - MPMX19_03972 0.41 +1.2 262,381 - MPMX19_03972 0.41 +1.3 262,381 - MPMX19_03972 0.41 +0.6 262,914 + MPMX19_03972 0.82 -0.4 262,914 + MPMX19_03972 0.82 +1.0 262,914 + MPMX19_03972 0.82 -0.8 262,914 + MPMX19_03972 0.82 -1.3 262,914 + MPMX19_03972 0.82 -1.7 262,914 + MPMX19_03972 0.82 +1.2 262,914 + MPMX19_03972 0.82 -0.2 262,914 + MPMX19_03972 0.82 -0.0 262,914 + MPMX19_03972 0.82 -1.2 262,915 - MPMX19_03972 0.82 -0.7 262,915 - MPMX19_03972 0.82 -0.0 262,915 - MPMX19_03972 0.82 +0.1 262,915 - MPMX19_03972 0.82 -0.2 262,915 - MPMX19_03972 0.82 +1.6 262,915 - MPMX19_03972 0.82 -1.5 263,194 + +0.0 263,194 + -0.7 263,195 - +1.6 263,195 - +0.5 263,212 + -0.8 263,213 - -0.7 263,224 - +0.8 263,224 - +0.2 263,237 + +1.0 263,237 + +0.2 263,237 + -0.6 263,237 + +1.2 263,237 + -1.5 263,237 + +1.0 263,237 + -0.5 263,237 + -0.8 263,238 - +0.2 263,238 - +0.3 263,238 - -0.6 263,238 - -1.0 263,238 - +0.7 263,251 + -1.9 263,251 + +0.6 263,251 + -0.3 263,251 + +1.2 263,251 + +1.2 263,251 + -1.9 263,252 - +0.6 263,252 - +0.4 263,252 - +1.6 263,252 - -0.2 263,252 - -0.9 263,252 - -0.5 263,252 - +0.2 263,424 + MPMX19_03973 0.17 -1.2 263,424 + MPMX19_03973 0.17 +0.2 263,424 + MPMX19_03973 0.17 -0.8 263,424 + MPMX19_03973 0.17 -0.4 263,424 + MPMX19_03973 0.17 +0.0 263,425 - MPMX19_03973 0.17 +2.2 263,425 - MPMX19_03973 0.17 -1.5 263,425 - MPMX19_03973 0.17 -0.8 263,425 - MPMX19_03973 0.17 -1.1 263,425 - MPMX19_03973 0.17 +0.5 263,425 - MPMX19_03973 0.17 +0.2 263,425 - MPMX19_03973 0.17 -1.2 263,466 + MPMX19_03973 0.23 -0.4 263,706 + MPMX19_03973 0.53 -0.4 263,706 + MPMX19_03973 0.53 -0.3 263,706 + MPMX19_03973 0.53 -1.9 263,706 + MPMX19_03973 0.53 +0.6 263,706 + MPMX19_03973 0.53 +1.5 263,706 + MPMX19_03973 0.53 -0.9 263,706 + MPMX19_03973 0.53 -0.5 263,706 + MPMX19_03973 0.53 +0.2 263,706 + MPMX19_03973 0.53 -0.2 263,706 + MPMX19_03973 0.53 +0.2 263,706 + MPMX19_03973 0.53 -0.4 263,706 + MPMX19_03973 0.53 +0.3 263,707 - MPMX19_03973 0.54 -0.4 263,707 - MPMX19_03973 0.54 -0.4 263,707 - MPMX19_03973 0.54 -0.5 263,707 - MPMX19_03973 0.54 -0.5 263,707 - MPMX19_03973 0.54 -0.0 263,707 - MPMX19_03973 0.54 -0.5 263,707 - MPMX19_03973 0.54 +0.2 263,707 - MPMX19_03973 0.54 +0.7 263,707 - MPMX19_03973 0.54 -0.2 263,707 - MPMX19_03973 0.54 -0.2 263,707 - MPMX19_03973 0.54 -0.8 263,707 - MPMX19_03973 0.54 -1.5 263,707 - MPMX19_03973 0.54 -1.2 263,707 - MPMX19_03973 0.54 +1.7 263,707 - MPMX19_03973 0.54 -1.4 263,871 + MPMX19_03973 0.74 -1.4 263,871 + MPMX19_03973 0.74 +0.6 263,872 - MPMX19_03973 0.75 -0.8 263,872 - MPMX19_03973 0.75 +1.0 263,925 + MPMX19_03973 0.81 -0.9 263,925 + MPMX19_03973 0.81 -0.2 263,925 + MPMX19_03973 0.81 -0.7 263,925 + MPMX19_03973 0.81 +0.6 263,925 + MPMX19_03973 0.81 -0.3 263,926 - MPMX19_03973 0.81 +1.0 263,926 - MPMX19_03973 0.81 -0.3 263,926 - MPMX19_03973 0.81 -1.2 263,926 - MPMX19_03973 0.81 -1.1 263,926 - MPMX19_03973 0.81 -0.3 263,926 - MPMX19_03973 0.81 -1.3 264,042 + -1.0 264,042 + -0.0 264,042 + +0.2 264,042 + -0.9 264,043 - -0.8 264,043 - +0.6 264,043 - -0.1 264,043 - -1.2 264,043 - +1.2 264,043 - +0.3 264,043 - -1.5 264,043 - -0.9 264,132 + +0.2 264,132 + +0.2 264,132 + +0.3 264,132 + +0.2 264,132 + -0.9 264,133 - +0.3 264,133 - -1.0 264,133 - -0.8 264,133 - +0.6 264,133 - +0.6 264,155 + -0.4 264,155 + -0.4 264,155 + -0.3 264,155 + -0.9 264,155 + +0.6 264,156 - -0.7 264,156 - -0.7 264,156 - -1.7 264,156 - +0.1 264,214 + +1.4 264,214 + -1.7 264,214 + +1.6 264,215 - +1.4 264,215 - +0.3 264,215 - +0.3 264,215 - -0.8 264,215 - -1.0 264,215 - +0.6 264,215 - -0.0 264,426 + MPMX19_03974 0.14 +0.2 264,426 + MPMX19_03974 0.14 +0.6 264,426 + MPMX19_03974 0.14 +0.1 264,426 + MPMX19_03974 0.14 -0.9 264,427 - MPMX19_03974 0.14 -0.4 264,427 - MPMX19_03974 0.14 -0.1 264,605 + MPMX19_03974 0.26 +0.5 264,605 + MPMX19_03974 0.26 -1.2 264,605 + MPMX19_03974 0.26 +1.2 264,606 - MPMX19_03974 0.26 -0.0 264,606 - MPMX19_03974 0.26 -1.2 264,635 + MPMX19_03974 0.28 +0.1 264,636 - MPMX19_03974 0.28 +0.7 264,636 - MPMX19_03974 0.28 +0.2 264,636 - MPMX19_03974 0.28 -0.7 264,636 - MPMX19_03974 0.28 -2.0 264,636 - MPMX19_03974 0.28 -0.7 264,803 + MPMX19_03974 0.39 -0.4 264,803 + MPMX19_03974 0.39 -0.5 264,803 + MPMX19_03974 0.39 +1.6 264,804 - MPMX19_03974 0.39 -1.4 264,804 - MPMX19_03974 0.39 +1.9 264,804 - MPMX19_03974 0.39 +1.2 264,986 + MPMX19_03974 0.50 -0.5 264,986 + MPMX19_03974 0.50 -0.2 264,986 + MPMX19_03974 0.50 -0.8 264,986 + MPMX19_03974 0.50 -0.7 264,986 + MPMX19_03974 0.50 -0.2 264,986 + MPMX19_03974 0.50 -1.4 264,986 + MPMX19_03974 0.50 -0.8 264,986 + MPMX19_03974 0.50 -1.8 264,986 + MPMX19_03974 0.50 -0.2 264,986 + MPMX19_03974 0.50 +1.2 264,986 + MPMX19_03974 0.50 -0.1 264,986 + MPMX19_03974 0.50 +0.8 264,986 + MPMX19_03974 0.50 -0.8 264,986 + MPMX19_03974 0.50 -0.2 264,986 + MPMX19_03974 0.50 -1.7 264,987 - MPMX19_03974 0.51 -0.5 264,987 - MPMX19_03974 0.51 +1.0 264,987 - MPMX19_03974 0.51 +0.4 264,987 - MPMX19_03974 0.51 +0.3 264,987 - MPMX19_03974 0.51 -0.1 264,987 - MPMX19_03974 0.51 +1.2 264,987 - MPMX19_03974 0.51 -0.2 264,987 - MPMX19_03974 0.51 +0.2 264,987 - MPMX19_03974 0.51 -0.5 264,987 - MPMX19_03974 0.51 -1.2 264,987 - MPMX19_03974 0.51 -2.2 264,992 + MPMX19_03974 0.51 -1.2 264,992 + MPMX19_03974 0.51 -0.5 264,992 + MPMX19_03974 0.51 -1.6 264,992 + MPMX19_03974 0.51 -1.2 264,992 + MPMX19_03974 0.51 -1.4 264,992 + MPMX19_03974 0.51 +0.4 264,992 + MPMX19_03974 0.51 -0.9 264,993 - MPMX19_03974 0.51 -1.2 264,993 - MPMX19_03974 0.51 -0.2 264,993 - MPMX19_03974 0.51 -1.0 264,993 - MPMX19_03974 0.51 -0.2 264,993 - MPMX19_03974 0.51 -0.2 264,993 - MPMX19_03974 0.51 -0.0 264,993 - MPMX19_03974 0.51 -0.7 264,993 - MPMX19_03974 0.51 +0.2 264,993 - MPMX19_03974 0.51 +0.1 264,993 - MPMX19_03974 0.51 -1.5 264,993 - MPMX19_03974 0.51 -1.2 264,993 - MPMX19_03974 0.51 -0.8 264,995 + MPMX19_03974 0.51 -0.3 264,995 + MPMX19_03974 0.51 -0.8 264,995 + MPMX19_03974 0.51 +0.7 264,995 + MPMX19_03974 0.51 +0.4 264,995 + MPMX19_03974 0.51 +1.2 264,995 + MPMX19_03974 0.51 +2.0 264,995 + MPMX19_03974 0.51 +0.2 264,996 - MPMX19_03974 0.51 +0.2 264,996 - MPMX19_03974 0.51 -1.0 264,996 - MPMX19_03974 0.51 +0.6 264,996 - MPMX19_03974 0.51 +0.7 264,996 - MPMX19_03974 0.51 +1.5 264,996 - MPMX19_03974 0.51 +0.0 264,996 - MPMX19_03974 0.51 -0.6
Or see this region's nucleotide sequence