Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03431

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03429 and MPMX19_03430 overlap by 4 nucleotidesMPMX19_03430 and MPMX19_03431 overlap by 4 nucleotidesMPMX19_03431 and MPMX19_03432 are separated by 256 nucleotides MPMX19_03429: MPMX19_03429 - hypothetical protein, at 821,284 to 823,326 _03429 MPMX19_03430: MPMX19_03430 - hypothetical protein, at 823,323 to 823,922 _03430 MPMX19_03431: MPMX19_03431 - hypothetical protein, at 823,919 to 824,476 _03431 MPMX19_03432: MPMX19_03432 - hypothetical protein, at 824,733 to 825,530 _03432 Position (kb) 823 824 825Strain fitness (log2 ratio) -2 -1 0 1at 823.422 kb on + strand, within MPMX19_03430at 823.422 kb on + strand, within MPMX19_03430at 823.423 kb on - strand, within MPMX19_03430at 823.423 kb on - strand, within MPMX19_03430at 823.446 kb on + strand, within MPMX19_03430at 823.446 kb on + strand, within MPMX19_03430at 823.446 kb on + strand, within MPMX19_03430at 823.446 kb on + strand, within MPMX19_03430at 823.447 kb on - strand, within MPMX19_03430at 823.447 kb on - strand, within MPMX19_03430at 823.447 kb on - strand, within MPMX19_03430at 823.734 kb on + strand, within MPMX19_03430at 823.734 kb on + strand, within MPMX19_03430at 823.734 kb on + strand, within MPMX19_03430at 823.773 kb on + strand, within MPMX19_03430at 823.812 kb on + strand, within MPMX19_03430at 823.812 kb on + strand, within MPMX19_03430at 823.812 kb on + strand, within MPMX19_03430at 823.812 kb on + strand, within MPMX19_03430at 823.812 kb on + strand, within MPMX19_03430at 823.812 kb on + strand, within MPMX19_03430at 823.812 kb on + strand, within MPMX19_03430at 823.812 kb on + strand, within MPMX19_03430at 823.812 kb on + strand, within MPMX19_03430at 823.812 kb on + strand, within MPMX19_03430at 823.812 kb on + strand, within MPMX19_03430at 823.812 kb on + strand, within MPMX19_03430at 823.812 kb on + strand, within MPMX19_03430at 823.812 kb on + strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.982 kb on + strand, within MPMX19_03431at 823.985 kb on + strand, within MPMX19_03431at 823.985 kb on + strand, within MPMX19_03431at 823.985 kb on + strand, within MPMX19_03431at 823.985 kb on + strand, within MPMX19_03431at 823.985 kb on + strand, within MPMX19_03431at 823.985 kb on + strand, within MPMX19_03431at 823.985 kb on + strand, within MPMX19_03431at 823.986 kb on - strand, within MPMX19_03431at 823.986 kb on - strand, within MPMX19_03431at 823.986 kb on - strand, within MPMX19_03431at 823.986 kb on - strand, within MPMX19_03431at 823.986 kb on - strand, within MPMX19_03431at 823.986 kb on - strand, within MPMX19_03431at 823.986 kb on - strand, within MPMX19_03431at 823.986 kb on - strand, within MPMX19_03431at 824.219 kb on + strand, within MPMX19_03431at 824.219 kb on + strand, within MPMX19_03431at 824.220 kb on - strand, within MPMX19_03431at 824.220 kb on - strand, within MPMX19_03431at 824.402 kb on + strand, within MPMX19_03431at 824.402 kb on + strand, within MPMX19_03431at 824.403 kb on - strand, within MPMX19_03431at 824.403 kb on - strand, within MPMX19_03431at 824.403 kb on - strand, within MPMX19_03431at 824.528 kb on + strandat 824.528 kb on + strandat 824.528 kb on + strandat 824.528 kb on + strandat 824.528 kb on + strandat 824.528 kb on + strandat 824.528 kb on + strandat 824.528 kb on + strandat 824.528 kb on + strandat 824.528 kb on + strandat 824.529 kb on - strandat 824.529 kb on - strandat 824.529 kb on - strandat 824.529 kb on - strandat 824.529 kb on - strandat 824.529 kb on - strandat 824.529 kb on - strandat 824.529 kb on - strandat 824.529 kb on - strandat 824.584 kb on - strandat 824.621 kb on + strandat 824.622 kb on - strandat 824.622 kb on - strandat 824.744 kb on + strandat 824.744 kb on + strandat 824.744 kb on + strandat 824.745 kb on - strandat 824.745 kb on - strandat 824.745 kb on - strandat 824.745 kb on - strandat 824.745 kb on - strandat 824.745 kb on - strandat 825.162 kb on + strand, within MPMX19_03432at 825.162 kb on + strand, within MPMX19_03432at 825.163 kb on - strand, within MPMX19_03432at 825.163 kb on - strand, within MPMX19_03432at 825.163 kb on - strand, within MPMX19_03432at 825.163 kb on - strand, within MPMX19_03432at 825.163 kb on - strand, within MPMX19_03432at 825.214 kb on + strand, within MPMX19_03432at 825.375 kb on + strand, within MPMX19_03432at 825.375 kb on + strand, within MPMX19_03432at 825.375 kb on + strand, within MPMX19_03432at 825.375 kb on + strand, within MPMX19_03432at 825.375 kb on + strand, within MPMX19_03432at 825.375 kb on + strand, within MPMX19_03432at 825.375 kb on + strand, within MPMX19_03432at 825.375 kb on + strand, within MPMX19_03432at 825.376 kb on - strand, within MPMX19_03432at 825.376 kb on - strand, within MPMX19_03432at 825.376 kb on - strand, within MPMX19_03432at 825.376 kb on - strand, within MPMX19_03432at 825.405 kb on + strand, within MPMX19_03432at 825.405 kb on + strand, within MPMX19_03432at 825.406 kb on - strand, within MPMX19_03432

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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823,422 + MPMX19_03430 0.17 +1.0
823,422 + MPMX19_03430 0.17 +0.6
823,423 - MPMX19_03430 0.17 -0.2
823,423 - MPMX19_03430 0.17 -1.2
823,446 + MPMX19_03430 0.20 +0.4
823,446 + MPMX19_03430 0.20 +1.3
823,446 + MPMX19_03430 0.20 +1.0
823,446 + MPMX19_03430 0.20 -0.8
823,447 - MPMX19_03430 0.21 +0.2
823,447 - MPMX19_03430 0.21 +0.7
823,447 - MPMX19_03430 0.21 +0.3
823,734 + MPMX19_03430 0.69 -0.8
823,734 + MPMX19_03430 0.69 +0.7
823,734 + MPMX19_03430 0.69 -0.2
823,773 + MPMX19_03430 0.75 -1.2
823,812 + MPMX19_03430 0.81 -0.9
823,812 + MPMX19_03430 0.81 -1.1
823,812 + MPMX19_03430 0.81 +0.2
823,812 + MPMX19_03430 0.81 +0.5
823,812 + MPMX19_03430 0.81 -0.7
823,812 + MPMX19_03430 0.81 +1.7
823,812 + MPMX19_03430 0.81 -0.9
823,812 + MPMX19_03430 0.81 -0.8
823,812 + MPMX19_03430 0.81 -0.2
823,812 + MPMX19_03430 0.81 -1.0
823,812 + MPMX19_03430 0.81 -1.2
823,812 + MPMX19_03430 0.81 -0.8
823,812 + MPMX19_03430 0.81 -1.5
823,812 + MPMX19_03430 0.81 +0.1
823,813 - MPMX19_03430 0.82 -2.4
823,813 - MPMX19_03430 0.82 +0.6
823,813 - MPMX19_03430 0.82 -2.0
823,813 - MPMX19_03430 0.82 -0.6
823,813 - MPMX19_03430 0.82 +0.3
823,813 - MPMX19_03430 0.82 -0.0
823,813 - MPMX19_03430 0.82 -0.0
823,813 - MPMX19_03430 0.82 -0.3
823,813 - MPMX19_03430 0.82 -0.4
823,813 - MPMX19_03430 0.82 +1.1
823,813 - MPMX19_03430 0.82 -1.5
823,813 - MPMX19_03430 0.82 -0.3
823,813 - MPMX19_03430 0.82 -0.0
823,813 - MPMX19_03430 0.82 +0.4
823,813 - MPMX19_03430 0.82 -0.6
823,813 - MPMX19_03430 0.82 +0.9
823,813 - MPMX19_03430 0.82 -0.7
823,813 - MPMX19_03430 0.82 -1.7
823,813 - MPMX19_03430 0.82 -0.7
823,813 - MPMX19_03430 0.82 -0.3
823,982 + MPMX19_03431 0.11 -1.0
823,985 + MPMX19_03431 0.12 +0.2
823,985 + MPMX19_03431 0.12 -0.4
823,985 + MPMX19_03431 0.12 -0.1
823,985 + MPMX19_03431 0.12 -0.4
823,985 + MPMX19_03431 0.12 -0.5
823,985 + MPMX19_03431 0.12 -0.4
823,985 + MPMX19_03431 0.12 -0.8
823,986 - MPMX19_03431 0.12 -0.8
823,986 - MPMX19_03431 0.12 +0.3
823,986 - MPMX19_03431 0.12 +1.0
823,986 - MPMX19_03431 0.12 +1.7
823,986 - MPMX19_03431 0.12 +0.4
823,986 - MPMX19_03431 0.12 -1.8
823,986 - MPMX19_03431 0.12 -0.6
823,986 - MPMX19_03431 0.12 -2.3
824,219 + MPMX19_03431 0.54 -1.4
824,219 + MPMX19_03431 0.54 -0.8
824,220 - MPMX19_03431 0.54 -2.3
824,220 - MPMX19_03431 0.54 -0.3
824,402 + MPMX19_03431 0.87 +0.2
824,402 + MPMX19_03431 0.87 -1.0
824,403 - MPMX19_03431 0.87 -1.6
824,403 - MPMX19_03431 0.87 -1.7
824,403 - MPMX19_03431 0.87 +1.0
824,528 + +1.6
824,528 + +0.3
824,528 + -1.1
824,528 + -0.6
824,528 + -1.3
824,528 + -1.2
824,528 + -0.5
824,528 + -2.3
824,528 + +0.1
824,528 + -2.3
824,529 - -0.4
824,529 - +1.2
824,529 - -0.0
824,529 - +0.6
824,529 - -1.8
824,529 - -2.0
824,529 - +0.3
824,529 - +0.7
824,529 - -1.5
824,584 - -0.6
824,621 + -0.6
824,622 - +0.6
824,622 - -0.0
824,744 + -1.4
824,744 + -0.8
824,744 + -0.3
824,745 - +0.3
824,745 - -1.3
824,745 - -0.3
824,745 - +0.7
824,745 - -0.7
824,745 - -0.6
825,162 + MPMX19_03432 0.54 -2.4
825,162 + MPMX19_03432 0.54 -1.8
825,163 - MPMX19_03432 0.54 +0.3
825,163 - MPMX19_03432 0.54 -1.5
825,163 - MPMX19_03432 0.54 -2.0
825,163 - MPMX19_03432 0.54 +1.6
825,163 - MPMX19_03432 0.54 -0.2
825,214 + MPMX19_03432 0.60 -1.1
825,375 + MPMX19_03432 0.80 -0.7
825,375 + MPMX19_03432 0.80 -0.4
825,375 + MPMX19_03432 0.80 +1.0
825,375 + MPMX19_03432 0.80 -0.1
825,375 + MPMX19_03432 0.80 +0.8
825,375 + MPMX19_03432 0.80 +0.1
825,375 + MPMX19_03432 0.80 -1.4
825,375 + MPMX19_03432 0.80 +0.7
825,376 - MPMX19_03432 0.81 +0.3
825,376 - MPMX19_03432 0.81 -0.2
825,376 - MPMX19_03432 0.81 -1.7
825,376 - MPMX19_03432 0.81 -0.6
825,405 + MPMX19_03432 0.84 +0.6
825,405 + MPMX19_03432 0.84 -0.6
825,406 - MPMX19_03432 0.84 -0.5

Or see this region's nucleotide sequence