Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03395

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03394 and MPMX19_03395 overlap by 4 nucleotidesMPMX19_03395 and MPMX19_03396 are separated by 5 nucleotidesMPMX19_03396 and MPMX19_03397 are separated by 33 nucleotides MPMX19_03394: MPMX19_03394 - hypothetical protein, at 780,303 to 781,343 _03394 MPMX19_03395: MPMX19_03395 - Lipopolysaccharide export system ATP-binding protein LptB, at 781,340 to 782,113 _03395 MPMX19_03396: MPMX19_03396 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 782,119 to 782,826 _03396 MPMX19_03397: MPMX19_03397 - Acetylornithine deacetylase, at 782,860 to 784,023 _03397 Position (kb) 781 782 783Strain fitness (log2 ratio) -2 -1 0 1 2at 780.459 kb on + strand, within MPMX19_03394at 780.459 kb on + strand, within MPMX19_03394at 780.459 kb on + strand, within MPMX19_03394at 780.459 kb on + strand, within MPMX19_03394at 780.460 kb on - strand, within MPMX19_03394at 780.460 kb on - strand, within MPMX19_03394at 780.460 kb on - strand, within MPMX19_03394at 780.528 kb on + strand, within MPMX19_03394at 780.529 kb on - strand, within MPMX19_03394at 780.562 kb on - strand, within MPMX19_03394at 780.562 kb on - strand, within MPMX19_03394at 780.562 kb on - strand, within MPMX19_03394at 780.579 kb on + strand, within MPMX19_03394at 780.579 kb on + strand, within MPMX19_03394at 780.579 kb on + strand, within MPMX19_03394at 780.580 kb on - strand, within MPMX19_03394at 780.580 kb on - strand, within MPMX19_03394at 780.580 kb on - strand, within MPMX19_03394at 780.580 kb on - strand, within MPMX19_03394at 780.580 kb on - strand, within MPMX19_03394at 780.580 kb on - strand, within MPMX19_03394at 780.580 kb on - strand, within MPMX19_03394at 780.580 kb on - strand, within MPMX19_03394at 780.705 kb on + strand, within MPMX19_03394at 780.706 kb on - strand, within MPMX19_03394at 780.706 kb on - strand, within MPMX19_03394at 780.706 kb on - strand, within MPMX19_03394at 780.706 kb on - strand, within MPMX19_03394at 780.706 kb on - strand, within MPMX19_03394at 780.756 kb on + strand, within MPMX19_03394at 780.756 kb on + strand, within MPMX19_03394at 780.757 kb on - strand, within MPMX19_03394at 780.757 kb on - strand, within MPMX19_03394at 780.757 kb on - strand, within MPMX19_03394at 780.757 kb on - strand, within MPMX19_03394at 780.757 kb on - strand, within MPMX19_03394at 780.894 kb on + strand, within MPMX19_03394at 780.895 kb on - strand, within MPMX19_03394at 780.909 kb on + strand, within MPMX19_03394at 780.909 kb on + strand, within MPMX19_03394at 780.910 kb on - strand, within MPMX19_03394at 780.999 kb on + strand, within MPMX19_03394at 780.999 kb on + strand, within MPMX19_03394at 780.999 kb on + strand, within MPMX19_03394at 780.999 kb on + strand, within MPMX19_03394at 781.000 kb on - strand, within MPMX19_03394at 781.000 kb on - strand, within MPMX19_03394at 781.000 kb on - strand, within MPMX19_03394at 781.014 kb on + strand, within MPMX19_03394at 781.014 kb on + strand, within MPMX19_03394at 781.014 kb on + strand, within MPMX19_03394at 781.014 kb on + strand, within MPMX19_03394at 781.014 kb on + strand, within MPMX19_03394at 781.014 kb on + strand, within MPMX19_03394at 781.014 kb on + strand, within MPMX19_03394at 781.014 kb on + strand, within MPMX19_03394at 781.015 kb on - strand, within MPMX19_03394at 781.015 kb on - strand, within MPMX19_03394at 781.015 kb on - strand, within MPMX19_03394at 781.015 kb on - strand, within MPMX19_03394at 781.015 kb on - strand, within MPMX19_03394at 781.015 kb on - strand, within MPMX19_03394at 781.015 kb on - strand, within MPMX19_03394at 781.015 kb on - strand, within MPMX19_03394at 781.015 kb on - strand, within MPMX19_03394at 781.015 kb on - strand, within MPMX19_03394at 781.056 kb on + strand, within MPMX19_03394at 781.056 kb on + strand, within MPMX19_03394at 781.057 kb on - strand, within MPMX19_03394at 781.057 kb on - strand, within MPMX19_03394at 782.096 kb on + strandat 782.096 kb on + strandat 782.097 kb on - strandat 782.149 kb on + strandat 782.150 kb on - strandat 782.652 kb on + strand, within MPMX19_03396at 782.652 kb on + strand, within MPMX19_03396at 782.652 kb on + strand, within MPMX19_03396at 782.737 kb on + strand, within MPMX19_03396at 782.737 kb on + strand, within MPMX19_03396at 782.737 kb on + strand, within MPMX19_03396at 782.738 kb on - strand, within MPMX19_03396at 782.738 kb on - strand, within MPMX19_03396at 782.738 kb on - strand, within MPMX19_03396at 782.738 kb on - strand, within MPMX19_03396at 782.738 kb on - strand, within MPMX19_03396at 783.111 kb on - strand, within MPMX19_03397

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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780,459 + MPMX19_03394 0.15 -0.7
780,459 + MPMX19_03394 0.15 -1.2
780,459 + MPMX19_03394 0.15 -1.3
780,459 + MPMX19_03394 0.15 -0.8
780,460 - MPMX19_03394 0.15 -1.2
780,460 - MPMX19_03394 0.15 -0.6
780,460 - MPMX19_03394 0.15 +1.4
780,528 + MPMX19_03394 0.22 -0.1
780,529 - MPMX19_03394 0.22 +0.2
780,562 - MPMX19_03394 0.25 +1.0
780,562 - MPMX19_03394 0.25 -0.3
780,562 - MPMX19_03394 0.25 +0.6
780,579 + MPMX19_03394 0.27 -0.2
780,579 + MPMX19_03394 0.27 -0.6
780,579 + MPMX19_03394 0.27 -1.5
780,580 - MPMX19_03394 0.27 -0.6
780,580 - MPMX19_03394 0.27 -0.7
780,580 - MPMX19_03394 0.27 -1.2
780,580 - MPMX19_03394 0.27 +0.1
780,580 - MPMX19_03394 0.27 -1.0
780,580 - MPMX19_03394 0.27 +0.0
780,580 - MPMX19_03394 0.27 +0.4
780,580 - MPMX19_03394 0.27 +0.4
780,705 + MPMX19_03394 0.39 -1.1
780,706 - MPMX19_03394 0.39 -1.8
780,706 - MPMX19_03394 0.39 -1.4
780,706 - MPMX19_03394 0.39 -0.3
780,706 - MPMX19_03394 0.39 +0.7
780,706 - MPMX19_03394 0.39 +0.4
780,756 + MPMX19_03394 0.44 -2.2
780,756 + MPMX19_03394 0.44 -0.1
780,757 - MPMX19_03394 0.44 -0.3
780,757 - MPMX19_03394 0.44 -1.0
780,757 - MPMX19_03394 0.44 -2.1
780,757 - MPMX19_03394 0.44 +0.0
780,757 - MPMX19_03394 0.44 -0.4
780,894 + MPMX19_03394 0.57 -0.6
780,895 - MPMX19_03394 0.57 -2.5
780,909 + MPMX19_03394 0.58 -0.9
780,909 + MPMX19_03394 0.58 +0.4
780,910 - MPMX19_03394 0.58 +1.7
780,999 + MPMX19_03394 0.67 +0.2
780,999 + MPMX19_03394 0.67 -1.1
780,999 + MPMX19_03394 0.67 -1.6
780,999 + MPMX19_03394 0.67 +0.6
781,000 - MPMX19_03394 0.67 -0.8
781,000 - MPMX19_03394 0.67 -1.2
781,000 - MPMX19_03394 0.67 -1.3
781,014 + MPMX19_03394 0.68 -0.3
781,014 + MPMX19_03394 0.68 +1.1
781,014 + MPMX19_03394 0.68 -1.4
781,014 + MPMX19_03394 0.68 -0.6
781,014 + MPMX19_03394 0.68 -0.5
781,014 + MPMX19_03394 0.68 +0.7
781,014 + MPMX19_03394 0.68 -0.8
781,014 + MPMX19_03394 0.68 +2.0
781,015 - MPMX19_03394 0.68 -0.2
781,015 - MPMX19_03394 0.68 -0.6
781,015 - MPMX19_03394 0.68 +0.0
781,015 - MPMX19_03394 0.68 -0.9
781,015 - MPMX19_03394 0.68 -1.5
781,015 - MPMX19_03394 0.68 -0.3
781,015 - MPMX19_03394 0.68 -0.7
781,015 - MPMX19_03394 0.68 -1.0
781,015 - MPMX19_03394 0.68 +0.3
781,015 - MPMX19_03394 0.68 -0.9
781,056 + MPMX19_03394 0.72 +0.6
781,056 + MPMX19_03394 0.72 +0.7
781,057 - MPMX19_03394 0.72 +0.4
781,057 - MPMX19_03394 0.72 +0.2
782,096 + +0.2
782,096 + -0.9
782,097 - +1.4
782,149 + -1.0
782,150 - -1.4
782,652 + MPMX19_03396 0.75 -1.6
782,652 + MPMX19_03396 0.75 -0.5
782,652 + MPMX19_03396 0.75 -2.2
782,737 + MPMX19_03396 0.87 -1.1
782,737 + MPMX19_03396 0.87 -0.1
782,737 + MPMX19_03396 0.87 +0.4
782,738 - MPMX19_03396 0.87 -1.9
782,738 - MPMX19_03396 0.87 -1.7
782,738 - MPMX19_03396 0.87 -1.3
782,738 - MPMX19_03396 0.87 +0.4
782,738 - MPMX19_03396 0.87 -0.2
783,111 - MPMX19_03397 0.22 -0.5

Or see this region's nucleotide sequence