Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02971

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02970 and MPMX19_02971 are separated by 248 nucleotidesMPMX19_02971 and MPMX19_02972 are separated by 43 nucleotidesMPMX19_02972 and MPMX19_02973 are separated by 12 nucleotides MPMX19_02970: MPMX19_02970 - Sialic acid-binding periplasmic protein SiaP, at 231,830 to 232,870 _02970 MPMX19_02971: MPMX19_02971 - Sialic acid TRAP transporter permease protein SiaT, at 233,119 to 235,014 _02971 MPMX19_02972: MPMX19_02972 - hypothetical protein, at 235,058 to 235,597 _02972 MPMX19_02973: MPMX19_02973 - 3-oxo-isoapionate-4-phosphate transcarboxylase/hydrolase, at 235,610 to 236,890 _02973 Position (kb) 233 234 235 236Strain fitness (log2 ratio) -2 -1 0 1 2at 232.211 kb on + strand, within MPMX19_02970at 232.212 kb on - strand, within MPMX19_02970at 232.286 kb on + strand, within MPMX19_02970at 232.286 kb on + strand, within MPMX19_02970at 232.287 kb on - strand, within MPMX19_02970at 232.287 kb on - strand, within MPMX19_02970at 232.287 kb on - strand, within MPMX19_02970at 232.463 kb on + strand, within MPMX19_02970at 232.463 kb on + strand, within MPMX19_02970at 232.463 kb on + strand, within MPMX19_02970at 232.464 kb on - strand, within MPMX19_02970at 232.464 kb on - strand, within MPMX19_02970at 232.464 kb on - strand, within MPMX19_02970at 232.535 kb on + strand, within MPMX19_02970at 232.797 kb on - strandat 232.969 kb on + strandat 232.969 kb on + strandat 232.969 kb on + strandat 232.969 kb on + strandat 232.969 kb on + strandat 232.970 kb on - strandat 232.970 kb on - strandat 232.970 kb on - strandat 233.078 kb on + strandat 233.078 kb on + strandat 233.078 kb on + strandat 233.078 kb on + strandat 233.078 kb on + strandat 233.079 kb on - strandat 233.079 kb on - strandat 233.297 kb on - strandat 233.400 kb on + strand, within MPMX19_02971at 233.400 kb on + strand, within MPMX19_02971at 233.401 kb on - strand, within MPMX19_02971at 233.401 kb on - strand, within MPMX19_02971at 233.401 kb on - strand, within MPMX19_02971at 233.503 kb on + strand, within MPMX19_02971at 233.504 kb on - strand, within MPMX19_02971at 233.518 kb on + strand, within MPMX19_02971at 233.518 kb on + strand, within MPMX19_02971at 233.518 kb on + strand, within MPMX19_02971at 233.519 kb on - strand, within MPMX19_02971at 233.833 kb on + strand, within MPMX19_02971at 233.833 kb on + strand, within MPMX19_02971at 233.833 kb on + strand, within MPMX19_02971at 233.833 kb on + strand, within MPMX19_02971at 233.834 kb on - strand, within MPMX19_02971at 233.834 kb on - strand, within MPMX19_02971at 234.025 kb on + strand, within MPMX19_02971at 234.025 kb on + strand, within MPMX19_02971at 234.025 kb on + strand, within MPMX19_02971at 234.025 kb on + strand, within MPMX19_02971at 234.025 kb on + strand, within MPMX19_02971at 234.025 kb on + strand, within MPMX19_02971at 234.025 kb on + strand, within MPMX19_02971at 234.025 kb on + strand, within MPMX19_02971at 234.025 kb on + strand, within MPMX19_02971at 234.025 kb on + strand, within MPMX19_02971at 234.046 kb on + strand, within MPMX19_02971at 234.046 kb on + strand, within MPMX19_02971at 234.046 kb on + strand, within MPMX19_02971at 234.046 kb on + strand, within MPMX19_02971at 234.046 kb on + strand, within MPMX19_02971at 234.046 kb on + strand, within MPMX19_02971at 234.046 kb on + strand, within MPMX19_02971at 234.508 kb on + strand, within MPMX19_02971at 234.508 kb on + strand, within MPMX19_02971at 234.509 kb on - strand, within MPMX19_02971at 234.811 kb on + strand, within MPMX19_02971at 234.811 kb on + strand, within MPMX19_02971at 234.812 kb on - strand, within MPMX19_02971at 234.812 kb on - strand, within MPMX19_02971at 234.812 kb on - strand, within MPMX19_02971at 234.874 kb on + strandat 234.878 kb on - strandat 234.878 kb on - strandat 234.937 kb on + strandat 234.938 kb on - strandat 234.938 kb on - strandat 234.938 kb on - strandat 235.013 kb on - strandat 235.042 kb on + strandat 235.043 kb on - strandat 235.095 kb on - strandat 235.127 kb on + strand, within MPMX19_02972at 235.128 kb on - strand, within MPMX19_02972at 235.128 kb on - strand, within MPMX19_02972at 235.128 kb on - strand, within MPMX19_02972at 235.163 kb on + strand, within MPMX19_02972at 235.163 kb on + strand, within MPMX19_02972at 235.164 kb on - strand, within MPMX19_02972at 235.164 kb on - strand, within MPMX19_02972at 235.190 kb on + strand, within MPMX19_02972at 235.190 kb on + strand, within MPMX19_02972at 235.190 kb on + strand, within MPMX19_02972at 235.190 kb on + strand, within MPMX19_02972at 235.190 kb on + strand, within MPMX19_02972at 235.191 kb on - strand, within MPMX19_02972at 235.191 kb on - strand, within MPMX19_02972at 235.191 kb on - strand, within MPMX19_02972at 235.191 kb on - strand, within MPMX19_02972at 235.191 kb on - strand, within MPMX19_02972at 235.191 kb on - strand, within MPMX19_02972at 235.191 kb on - strand, within MPMX19_02972at 235.191 kb on - strand, within MPMX19_02972at 235.191 kb on - strand, within MPMX19_02972at 235.197 kb on - strand, within MPMX19_02972at 235.197 kb on - strand, within MPMX19_02972at 235.197 kb on - strand, within MPMX19_02972at 235.197 kb on - strand, within MPMX19_02972at 235.211 kb on + strand, within MPMX19_02972at 235.298 kb on + strand, within MPMX19_02972at 235.298 kb on + strand, within MPMX19_02972at 235.298 kb on + strand, within MPMX19_02972at 235.298 kb on + strand, within MPMX19_02972at 235.299 kb on - strand, within MPMX19_02972at 235.299 kb on - strand, within MPMX19_02972at 235.347 kb on - strand, within MPMX19_02972at 235.361 kb on + strand, within MPMX19_02972at 235.361 kb on + strand, within MPMX19_02972at 235.362 kb on - strand, within MPMX19_02972at 235.362 kb on - strand, within MPMX19_02972at 235.445 kb on + strand, within MPMX19_02972at 235.445 kb on + strand, within MPMX19_02972at 235.445 kb on + strand, within MPMX19_02972at 235.445 kb on + strand, within MPMX19_02972at 235.445 kb on + strand, within MPMX19_02972at 235.446 kb on - strand, within MPMX19_02972at 235.446 kb on - strand, within MPMX19_02972at 235.446 kb on - strand, within MPMX19_02972at 235.460 kb on + strand, within MPMX19_02972at 235.460 kb on + strand, within MPMX19_02972at 235.460 kb on + strand, within MPMX19_02972at 235.460 kb on + strand, within MPMX19_02972at 235.460 kb on + strand, within MPMX19_02972at 235.460 kb on + strand, within MPMX19_02972at 235.460 kb on + strand, within MPMX19_02972at 235.460 kb on + strand, within MPMX19_02972at 235.460 kb on + strand, within MPMX19_02972at 235.460 kb on + strand, within MPMX19_02972at 235.460 kb on + strand, within MPMX19_02972at 235.461 kb on - strand, within MPMX19_02972at 235.461 kb on - strand, within MPMX19_02972at 235.461 kb on - strand, within MPMX19_02972at 235.595 kb on + strandat 235.596 kb on - strandat 235.637 kb on + strandat 235.637 kb on + strandat 235.637 kb on + strandat 235.637 kb on + strandat 235.637 kb on + strandat 235.637 kb on + strandat 235.637 kb on + strandat 235.637 kb on + strandat 235.637 kb on + strandat 235.637 kb on + strandat 235.638 kb on - strandat 235.638 kb on - strandat 235.638 kb on - strandat 235.638 kb on - strandat 235.638 kb on - strandat 235.638 kb on - strandat 235.638 kb on - strandat 235.937 kb on + strand, within MPMX19_02973at 235.937 kb on + strand, within MPMX19_02973at 235.938 kb on - strand, within MPMX19_02973at 235.938 kb on - strand, within MPMX19_02973at 235.995 kb on - strand, within MPMX19_02973at 235.995 kb on - strand, within MPMX19_02973

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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232,211 + MPMX19_02970 0.37 -0.9
232,212 - MPMX19_02970 0.37 -1.6
232,286 + MPMX19_02970 0.44 -0.5
232,286 + MPMX19_02970 0.44 -1.3
232,287 - MPMX19_02970 0.44 +0.1
232,287 - MPMX19_02970 0.44 -0.5
232,287 - MPMX19_02970 0.44 -0.1
232,463 + MPMX19_02970 0.61 -1.0
232,463 + MPMX19_02970 0.61 -0.2
232,463 + MPMX19_02970 0.61 -1.1
232,464 - MPMX19_02970 0.61 -0.4
232,464 - MPMX19_02970 0.61 +0.5
232,464 - MPMX19_02970 0.61 +0.7
232,535 + MPMX19_02970 0.68 -2.4
232,797 - -0.8
232,969 + +0.3
232,969 + -0.9
232,969 + +0.2
232,969 + +0.1
232,969 + +0.7
232,970 - +0.4
232,970 - -0.6
232,970 - -1.9
233,078 + -1.1
233,078 + -0.3
233,078 + +0.4
233,078 + -0.2
233,078 + -0.4
233,079 - +0.2
233,079 - -1.4
233,297 - -0.9
233,400 + MPMX19_02971 0.15 -0.8
233,400 + MPMX19_02971 0.15 +1.3
233,401 - MPMX19_02971 0.15 +0.0
233,401 - MPMX19_02971 0.15 -0.7
233,401 - MPMX19_02971 0.15 -1.1
233,503 + MPMX19_02971 0.20 -0.2
233,504 - MPMX19_02971 0.20 -0.5
233,518 + MPMX19_02971 0.21 -0.2
233,518 + MPMX19_02971 0.21 +0.1
233,518 + MPMX19_02971 0.21 +0.3
233,519 - MPMX19_02971 0.21 -0.6
233,833 + MPMX19_02971 0.38 -1.1
233,833 + MPMX19_02971 0.38 -0.2
233,833 + MPMX19_02971 0.38 +0.8
233,833 + MPMX19_02971 0.38 -0.3
233,834 - MPMX19_02971 0.38 +0.8
233,834 - MPMX19_02971 0.38 -0.2
234,025 + MPMX19_02971 0.48 -0.6
234,025 + MPMX19_02971 0.48 -1.4
234,025 + MPMX19_02971 0.48 -2.6
234,025 + MPMX19_02971 0.48 +0.7
234,025 + MPMX19_02971 0.48 -0.9
234,025 + MPMX19_02971 0.48 +0.5
234,025 + MPMX19_02971 0.48 -2.1
234,025 + MPMX19_02971 0.48 -0.8
234,025 + MPMX19_02971 0.48 -1.4
234,025 + MPMX19_02971 0.48 +0.4
234,046 + MPMX19_02971 0.49 +0.5
234,046 + MPMX19_02971 0.49 +0.9
234,046 + MPMX19_02971 0.49 +0.7
234,046 + MPMX19_02971 0.49 +1.1
234,046 + MPMX19_02971 0.49 +0.1
234,046 + MPMX19_02971 0.49 +0.8
234,046 + MPMX19_02971 0.49 -0.9
234,508 + MPMX19_02971 0.73 -1.1
234,508 + MPMX19_02971 0.73 +0.5
234,509 - MPMX19_02971 0.73 -1.5
234,811 + MPMX19_02971 0.89 +0.4
234,811 + MPMX19_02971 0.89 -0.3
234,812 - MPMX19_02971 0.89 +0.3
234,812 - MPMX19_02971 0.89 +0.4
234,812 - MPMX19_02971 0.89 -0.4
234,874 + -1.5
234,878 - +0.3
234,878 - -1.2
234,937 + -1.3
234,938 - +1.1
234,938 - -0.4
234,938 - -0.3
235,013 - -1.0
235,042 + +1.1
235,043 - +1.9
235,095 - +0.5
235,127 + MPMX19_02972 0.13 -0.6
235,128 - MPMX19_02972 0.13 -0.3
235,128 - MPMX19_02972 0.13 -2.5
235,128 - MPMX19_02972 0.13 +0.5
235,163 + MPMX19_02972 0.19 -0.5
235,163 + MPMX19_02972 0.19 -0.0
235,164 - MPMX19_02972 0.20 -0.2
235,164 - MPMX19_02972 0.20 -1.5
235,190 + MPMX19_02972 0.24 -0.5
235,190 + MPMX19_02972 0.24 -1.5
235,190 + MPMX19_02972 0.24 -1.3
235,190 + MPMX19_02972 0.24 -1.4
235,190 + MPMX19_02972 0.24 -1.6
235,191 - MPMX19_02972 0.25 -0.2
235,191 - MPMX19_02972 0.25 -0.2
235,191 - MPMX19_02972 0.25 -0.1
235,191 - MPMX19_02972 0.25 -1.5
235,191 - MPMX19_02972 0.25 -0.2
235,191 - MPMX19_02972 0.25 -2.2
235,191 - MPMX19_02972 0.25 -1.1
235,191 - MPMX19_02972 0.25 -0.5
235,191 - MPMX19_02972 0.25 -0.0
235,197 - MPMX19_02972 0.26 +0.1
235,197 - MPMX19_02972 0.26 -0.9
235,197 - MPMX19_02972 0.26 -0.1
235,197 - MPMX19_02972 0.26 -1.1
235,211 + MPMX19_02972 0.28 -2.2
235,298 + MPMX19_02972 0.44 +0.5
235,298 + MPMX19_02972 0.44 -0.3
235,298 + MPMX19_02972 0.44 -0.5
235,298 + MPMX19_02972 0.44 +1.0
235,299 - MPMX19_02972 0.45 +0.1
235,299 - MPMX19_02972 0.45 -1.2
235,347 - MPMX19_02972 0.54 -1.2
235,361 + MPMX19_02972 0.56 -0.2
235,361 + MPMX19_02972 0.56 -0.6
235,362 - MPMX19_02972 0.56 -0.6
235,362 - MPMX19_02972 0.56 -1.3
235,445 + MPMX19_02972 0.72 -0.7
235,445 + MPMX19_02972 0.72 -1.0
235,445 + MPMX19_02972 0.72 -1.6
235,445 + MPMX19_02972 0.72 -1.1
235,445 + MPMX19_02972 0.72 +0.1
235,446 - MPMX19_02972 0.72 -1.0
235,446 - MPMX19_02972 0.72 -0.0
235,446 - MPMX19_02972 0.72 +0.1
235,460 + MPMX19_02972 0.74 -1.7
235,460 + MPMX19_02972 0.74 +0.2
235,460 + MPMX19_02972 0.74 +0.0
235,460 + MPMX19_02972 0.74 -1.2
235,460 + MPMX19_02972 0.74 -0.8
235,460 + MPMX19_02972 0.74 +0.1
235,460 + MPMX19_02972 0.74 -0.1
235,460 + MPMX19_02972 0.74 +0.1
235,460 + MPMX19_02972 0.74 -1.4
235,460 + MPMX19_02972 0.74 -1.5
235,460 + MPMX19_02972 0.74 -0.9
235,461 - MPMX19_02972 0.75 -0.9
235,461 - MPMX19_02972 0.75 -0.5
235,461 - MPMX19_02972 0.75 -0.1
235,595 + +0.8
235,596 - +0.3
235,637 + -1.8
235,637 + -0.4
235,637 + -0.5
235,637 + +1.3
235,637 + -1.2
235,637 + -0.8
235,637 + +0.9
235,637 + -1.4
235,637 + -0.6
235,637 + -1.5
235,638 - -2.2
235,638 - -0.7
235,638 - -0.3
235,638 - -0.8
235,638 - -0.8
235,638 - +0.3
235,638 - -0.3
235,937 + MPMX19_02973 0.26 -0.1
235,937 + MPMX19_02973 0.26 +0.0
235,938 - MPMX19_02973 0.26 -1.0
235,938 - MPMX19_02973 0.26 +0.2
235,995 - MPMX19_02973 0.30 -0.1
235,995 - MPMX19_02973 0.30 +0.3

Or see this region's nucleotide sequence