Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00243 and MPMX19_00244 overlap by 4 nucleotides MPMX19_00244 and MPMX19_00245 are separated by 76 nucleotides MPMX19_00245 and MPMX19_00246 are separated by 99 nucleotides MPMX19_00246 and MPMX19_00247 are separated by 198 nucleotides
MPMX19_00243: MPMX19_00243 - ECF RNA polymerase sigma factor SigJ, at 244,502 to 245,407
_00243
MPMX19_00244: MPMX19_00244 - hypothetical protein, at 245,404 to 245,778
_00244
MPMX19_00245: MPMX19_00245 - hypothetical protein, at 245,855 to 246,589
_00245
MPMX19_00246: MPMX19_00246 - hypothetical protein, at 246,689 to 247,054
_00246
MPMX19_00247: MPMX19_00247 - Ferric uptake regulation protein, at 247,253 to 247,690
_00247
Position (kb) 245
246
247 Strain fitness (log2 ratio) -2
-1
0
1
2 at 244.913 kb on + strand, within MPMX19_00243 at 244.914 kb on - strand, within MPMX19_00243 at 244.914 kb on - strand, within MPMX19_00243 at 244.914 kb on - strand, within MPMX19_00243 at 245.084 kb on + strand, within MPMX19_00243 at 245.084 kb on + strand, within MPMX19_00243 at 245.084 kb on + strand, within MPMX19_00243 at 245.084 kb on + strand, within MPMX19_00243 at 245.084 kb on + strand, within MPMX19_00243 at 245.084 kb on + strand, within MPMX19_00243 at 245.084 kb on + strand, within MPMX19_00243 at 245.084 kb on + strand, within MPMX19_00243 at 245.085 kb on - strand, within MPMX19_00243 at 245.085 kb on - strand, within MPMX19_00243 at 245.085 kb on - strand, within MPMX19_00243 at 245.085 kb on - strand, within MPMX19_00243 at 245.085 kb on - strand, within MPMX19_00243 at 245.085 kb on - strand, within MPMX19_00243 at 245.085 kb on - strand, within MPMX19_00243 at 245.085 kb on - strand, within MPMX19_00243 at 245.085 kb on - strand, within MPMX19_00243 at 245.360 kb on + strand at 245.360 kb on + strand at 245.360 kb on + strand at 245.360 kb on + strand at 245.360 kb on + strand at 245.360 kb on + strand at 245.360 kb on + strand at 245.360 kb on + strand at 245.360 kb on + strand at 245.361 kb on - strand at 245.361 kb on - strand at 245.361 kb on - strand at 245.361 kb on - strand at 245.361 kb on - strand at 245.361 kb on - strand at 245.361 kb on - strand at 245.405 kb on + strand at 245.405 kb on + strand at 245.406 kb on - strand at 245.406 kb on - strand at 245.406 kb on - strand at 245.406 kb on - strand at 245.522 kb on + strand, within MPMX19_00244 at 245.522 kb on + strand, within MPMX19_00244 at 245.522 kb on + strand, within MPMX19_00244 at 245.523 kb on - strand, within MPMX19_00244 at 245.523 kb on - strand, within MPMX19_00244 at 245.738 kb on + strand, within MPMX19_00244 at 245.738 kb on + strand, within MPMX19_00244 at 245.738 kb on + strand, within MPMX19_00244 at 245.739 kb on - strand, within MPMX19_00244 at 245.739 kb on - strand, within MPMX19_00244 at 245.739 kb on - strand, within MPMX19_00244 at 245.739 kb on - strand, within MPMX19_00244 at 245.739 kb on - strand, within MPMX19_00244 at 245.808 kb on - strand at 245.822 kb on + strand at 245.822 kb on + strand at 245.822 kb on + strand at 245.822 kb on + strand at 245.822 kb on + strand at 245.822 kb on + strand at 245.822 kb on + strand at 245.823 kb on - strand at 245.823 kb on - strand at 245.845 kb on + strand at 245.845 kb on + strand at 245.845 kb on + strand at 245.845 kb on + strand at 245.845 kb on + strand at 245.845 kb on + strand at 245.845 kb on + strand at 245.845 kb on + strand at 245.845 kb on + strand at 245.845 kb on + strand at 245.846 kb on - strand at 245.846 kb on - strand at 245.846 kb on - strand at 245.846 kb on - strand at 245.846 kb on - strand at 245.846 kb on - strand at 245.846 kb on - strand at 245.846 kb on - strand at 245.856 kb on + strand at 245.856 kb on + strand at 245.856 kb on + strand at 245.856 kb on + strand at 245.856 kb on + strand at 245.856 kb on + strand at 245.856 kb on + strand at 245.856 kb on + strand at 245.856 kb on + strand at 245.856 kb on + strand at 245.857 kb on - strand at 245.857 kb on - strand at 245.857 kb on - strand at 245.857 kb on - strand at 245.857 kb on - strand at 245.857 kb on - strand at 245.857 kb on - strand at 245.857 kb on - strand at 245.857 kb on - strand at 245.881 kb on + strand at 245.882 kb on - strand at 245.882 kb on - strand at 246.599 kb on + strand at 246.600 kb on - strand at 247.246 kb on + strand at 247.246 kb on + strand at 247.246 kb on + strand at 247.246 kb on + strand at 247.246 kb on + strand at 247.246 kb on + strand at 247.246 kb on + strand at 247.246 kb on + strand at 247.247 kb on - strand at 247.247 kb on - strand at 247.247 kb on - strand at 247.247 kb on - strand at 247.247 kb on - strand at 247.247 kb on - strand at 247.247 kb on - strand at 247.247 kb on - strand at 247.247 kb on - strand at 247.247 kb on - strand at 247.247 kb on - strand at 247.248 kb on + strand at 247.248 kb on + strand at 247.249 kb on - strand at 247.249 kb on - strand at 247.249 kb on - strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.251 kb on - strand at 247.251 kb on - strand at 247.251 kb on - strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.255 kb on - strand at 247.255 kb on - strand at 247.255 kb on - strand at 247.255 kb on - strand at 247.255 kb on - strand at 247.255 kb on - strand at 247.255 kb on - strand at 247.255 kb on - strand at 247.255 kb on - strand at 247.255 kb on - strand at 247.267 kb on + strand at 247.268 kb on - strand at 247.296 kb on + strand at 247.296 kb on + strand at 247.297 kb on - strand, within MPMX19_00247 at 247.297 kb on - strand, within MPMX19_00247 at 247.297 kb on - strand, within MPMX19_00247 at 247.326 kb on + strand, within MPMX19_00247 at 247.326 kb on + strand, within MPMX19_00247 at 247.343 kb on + strand, within MPMX19_00247 at 247.343 kb on + strand, within MPMX19_00247 at 247.344 kb on - strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.410 kb on - strand, within MPMX19_00247 at 247.410 kb on - strand, within MPMX19_00247 at 247.410 kb on - strand, within MPMX19_00247 at 247.410 kb on - strand, within MPMX19_00247 at 247.446 kb on + strand, within MPMX19_00247 at 247.519 kb on - strand, within MPMX19_00247
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 244,913 + MPMX19_00243 0.45 -0.4 244,914 - MPMX19_00243 0.45 -0.3 244,914 - MPMX19_00243 0.45 +1.8 244,914 - MPMX19_00243 0.45 -0.5 245,084 + MPMX19_00243 0.64 -1.6 245,084 + MPMX19_00243 0.64 -0.8 245,084 + MPMX19_00243 0.64 +1.2 245,084 + MPMX19_00243 0.64 +0.8 245,084 + MPMX19_00243 0.64 -0.5 245,084 + MPMX19_00243 0.64 +0.4 245,084 + MPMX19_00243 0.64 -0.8 245,084 + MPMX19_00243 0.64 +0.4 245,085 - MPMX19_00243 0.64 -1.5 245,085 - MPMX19_00243 0.64 -1.3 245,085 - MPMX19_00243 0.64 -1.1 245,085 - MPMX19_00243 0.64 -2.6 245,085 - MPMX19_00243 0.64 +0.8 245,085 - MPMX19_00243 0.64 -0.2 245,085 - MPMX19_00243 0.64 -0.0 245,085 - MPMX19_00243 0.64 -0.2 245,085 - MPMX19_00243 0.64 -0.2 245,360 + -1.2 245,360 + +0.6 245,360 + -1.4 245,360 + -0.9 245,360 + -0.1 245,360 + -0.2 245,360 + -1.1 245,360 + -0.3 245,360 + +0.2 245,361 - -0.7 245,361 - -1.6 245,361 - +0.1 245,361 - -0.1 245,361 - +0.9 245,361 - -0.8 245,361 - +0.1 245,405 + +0.6 245,405 + -1.0 245,406 - +0.6 245,406 - +1.2 245,406 - -1.4 245,406 - -1.7 245,522 + MPMX19_00244 0.31 +1.0 245,522 + MPMX19_00244 0.31 -0.7 245,522 + MPMX19_00244 0.31 -1.8 245,523 - MPMX19_00244 0.32 -0.5 245,523 - MPMX19_00244 0.32 -1.1 245,738 + MPMX19_00244 0.89 +0.7 245,738 + MPMX19_00244 0.89 -1.2 245,738 + MPMX19_00244 0.89 +1.2 245,739 - MPMX19_00244 0.89 -0.5 245,739 - MPMX19_00244 0.89 +0.8 245,739 - MPMX19_00244 0.89 +0.3 245,739 - MPMX19_00244 0.89 -1.0 245,739 - MPMX19_00244 0.89 -0.5 245,808 - -0.4 245,822 + +0.5 245,822 + -1.0 245,822 + -1.1 245,822 + -0.9 245,822 + -0.7 245,822 + +0.3 245,822 + +0.3 245,823 - +0.4 245,823 - +0.0 245,845 + -0.9 245,845 + -0.6 245,845 + +0.1 245,845 + -0.1 245,845 + +0.4 245,845 + -0.4 245,845 + -0.0 245,845 + -0.7 245,845 + -0.8 245,845 + -0.4 245,846 - -0.9 245,846 - -0.1 245,846 - -2.0 245,846 - +0.2 245,846 - -0.8 245,846 - -0.6 245,846 - -0.8 245,846 - -1.3 245,856 + -0.8 245,856 + +0.2 245,856 + -0.5 245,856 + -1.0 245,856 + -0.2 245,856 + -0.5 245,856 + -0.6 245,856 + +0.6 245,856 + -0.0 245,856 + +0.6 245,857 - -0.7 245,857 - -0.8 245,857 - +0.0 245,857 - -0.6 245,857 - +0.5 245,857 - -1.0 245,857 - +0.2 245,857 - +0.2 245,857 - +0.2 245,881 + -0.4 245,882 - -0.1 245,882 - -0.4 246,599 + +0.3 246,600 - -0.4 247,246 + +0.2 247,246 + -0.4 247,246 + -0.8 247,246 + -1.3 247,246 + -0.6 247,246 + +1.0 247,246 + -0.6 247,246 + -0.1 247,247 - +0.5 247,247 - -0.4 247,247 - -2.3 247,247 - -0.1 247,247 - +0.2 247,247 - +1.1 247,247 - +0.5 247,247 - -0.0 247,247 - -0.3 247,247 - -0.3 247,247 - +0.6 247,248 + -0.3 247,248 + -0.7 247,249 - -0.3 247,249 - -1.9 247,249 - +0.6 247,250 + -1.6 247,250 + -0.3 247,250 + +0.5 247,250 + +1.0 247,250 + -0.2 247,250 + -1.2 247,250 + +0.2 247,250 + -0.5 247,250 + -1.1 247,250 + +0.2 247,250 + -1.3 247,250 + +0.2 247,250 + +0.7 247,250 + -0.3 247,251 - -0.6 247,251 - -0.3 247,251 - -1.5 247,254 + +0.9 247,254 + -0.6 247,254 + -0.7 247,254 + -0.8 247,254 + -0.1 247,254 + +0.9 247,254 + +0.1 247,254 + -0.3 247,254 + -1.1 247,254 + +0.8 247,254 + -0.4 247,254 + +0.3 247,254 + +0.6 247,254 + -0.9 247,254 + -0.4 247,254 + +0.3 247,254 + -0.4 247,255 - +0.3 247,255 - +0.5 247,255 - -0.7 247,255 - +0.6 247,255 - -0.4 247,255 - +0.5 247,255 - -1.3 247,255 - -0.7 247,255 - -0.7 247,255 - -0.7 247,267 + +0.3 247,268 - +0.8 247,296 + -1.6 247,296 + +0.2 247,297 - MPMX19_00247 0.10 -0.7 247,297 - MPMX19_00247 0.10 -1.3 247,297 - MPMX19_00247 0.10 +0.1 247,326 + MPMX19_00247 0.17 -1.0 247,326 + MPMX19_00247 0.17 -2.4 247,343 + MPMX19_00247 0.21 -1.6 247,343 + MPMX19_00247 0.21 -0.7 247,344 - MPMX19_00247 0.21 +0.1 247,409 + MPMX19_00247 0.36 +0.4 247,409 + MPMX19_00247 0.36 -1.5 247,409 + MPMX19_00247 0.36 -0.6 247,409 + MPMX19_00247 0.36 +0.2 247,409 + MPMX19_00247 0.36 +1.6 247,409 + MPMX19_00247 0.36 +0.5 247,409 + MPMX19_00247 0.36 +0.2 247,409 + MPMX19_00247 0.36 +0.8 247,409 + MPMX19_00247 0.36 -0.6 247,409 + MPMX19_00247 0.36 +0.5 247,409 + MPMX19_00247 0.36 -0.6 247,409 + MPMX19_00247 0.36 +0.0 247,410 - MPMX19_00247 0.36 -0.8 247,410 - MPMX19_00247 0.36 -0.1 247,410 - MPMX19_00247 0.36 -0.7 247,410 - MPMX19_00247 0.36 +0.6 247,446 + MPMX19_00247 0.44 -0.7 247,519 - MPMX19_00247 0.61 +0.9
Or see this region's nucleotide sequence