Experiment: vio MOI10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00666 and OHPLBJKB_00667 are separated by 5 nucleotides OHPLBJKB_00667 and OHPLBJKB_00668 are separated by 147 nucleotides OHPLBJKB_00668 and OHPLBJKB_00669 are separated by 204 nucleotides OHPLBJKB_00669 and OHPLBJKB_00670 are separated by 0 nucleotides
OHPLBJKB_00666: OHPLBJKB_00666 - Putative acid--amine ligase YgiC, at 684,489 to 685,649
_00666
OHPLBJKB_00667: OHPLBJKB_00667 - hypothetical protein, at 685,655 to 686,326
_00667
OHPLBJKB_00668: OHPLBJKB_00668 - Outer membrane protein TolC, at 686,474 to 687,955
_00668
OHPLBJKB_00669: OHPLBJKB_00669 - ADP-ribose pyrophosphatase, at 688,160 to 688,789
_00669
OHPLBJKB_00670: OHPLBJKB_00670 - hypothetical protein, at 688,790 to 689,212
_00670
Position (kb) 686
687
688 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 685.537 kb on + strand at 685.537 kb on + strand at 685.538 kb on - strand at 685.541 kb on - strand at 685.571 kb on - strand at 685.571 kb on - strand at 685.702 kb on + strand at 685.702 kb on + strand at 685.703 kb on - strand at 685.703 kb on - strand at 685.847 kb on - strand, within OHPLBJKB_00667 at 685.849 kb on - strand, within OHPLBJKB_00667 at 685.849 kb on - strand, within OHPLBJKB_00667 at 685.849 kb on - strand, within OHPLBJKB_00667 at 685.849 kb on - strand, within OHPLBJKB_00667 at 685.849 kb on - strand, within OHPLBJKB_00667 at 685.849 kb on - strand, within OHPLBJKB_00667 at 685.853 kb on - strand, within OHPLBJKB_00667 at 685.853 kb on - strand, within OHPLBJKB_00667 at 685.858 kb on - strand, within OHPLBJKB_00667 at 685.941 kb on + strand, within OHPLBJKB_00667 at 686.095 kb on + strand, within OHPLBJKB_00667 at 686.124 kb on + strand, within OHPLBJKB_00667 at 686.134 kb on + strand, within OHPLBJKB_00667 at 686.134 kb on + strand, within OHPLBJKB_00667 at 686.135 kb on - strand, within OHPLBJKB_00667 at 686.188 kb on - strand, within OHPLBJKB_00667 at 686.307 kb on - strand at 686.349 kb on + strand at 686.349 kb on + strand at 686.349 kb on + strand at 686.349 kb on + strand at 686.350 kb on - strand at 686.350 kb on - strand at 686.354 kb on - strand at 686.354 kb on - strand at 686.430 kb on - strand at 686.430 kb on - strand at 686.492 kb on - strand at 686.572 kb on + strand at 686.573 kb on - strand at 686.573 kb on - strand at 686.713 kb on - strand, within OHPLBJKB_00668 at 686.719 kb on - strand, within OHPLBJKB_00668 at 686.752 kb on - strand, within OHPLBJKB_00668 at 686.825 kb on + strand, within OHPLBJKB_00668 at 686.826 kb on - strand, within OHPLBJKB_00668 at 686.847 kb on - strand, within OHPLBJKB_00668 at 686.859 kb on + strand, within OHPLBJKB_00668 at 686.859 kb on + strand, within OHPLBJKB_00668 at 686.872 kb on + strand, within OHPLBJKB_00668 at 686.878 kb on + strand, within OHPLBJKB_00668 at 686.878 kb on + strand, within OHPLBJKB_00668 at 686.879 kb on - strand, within OHPLBJKB_00668 at 686.887 kb on + strand, within OHPLBJKB_00668 at 686.888 kb on - strand, within OHPLBJKB_00668 at 686.970 kb on + strand, within OHPLBJKB_00668 at 686.970 kb on + strand, within OHPLBJKB_00668 at 686.971 kb on - strand, within OHPLBJKB_00668 at 686.971 kb on - strand, within OHPLBJKB_00668 at 687.013 kb on - strand, within OHPLBJKB_00668 at 687.013 kb on - strand, within OHPLBJKB_00668 at 687.056 kb on - strand, within OHPLBJKB_00668 at 687.070 kb on - strand, within OHPLBJKB_00668 at 687.108 kb on + strand, within OHPLBJKB_00668 at 687.108 kb on + strand, within OHPLBJKB_00668 at 687.109 kb on - strand, within OHPLBJKB_00668 at 687.109 kb on - strand, within OHPLBJKB_00668 at 687.156 kb on - strand, within OHPLBJKB_00668 at 687.324 kb on + strand, within OHPLBJKB_00668 at 687.324 kb on + strand, within OHPLBJKB_00668 at 687.324 kb on + strand, within OHPLBJKB_00668 at 687.324 kb on + strand, within OHPLBJKB_00668 at 687.324 kb on + strand, within OHPLBJKB_00668 at 687.324 kb on + strand, within OHPLBJKB_00668 at 687.324 kb on + strand, within OHPLBJKB_00668 at 687.325 kb on - strand, within OHPLBJKB_00668 at 687.325 kb on - strand, within OHPLBJKB_00668 at 687.325 kb on - strand, within OHPLBJKB_00668 at 687.325 kb on - strand, within OHPLBJKB_00668 at 687.353 kb on + strand, within OHPLBJKB_00668 at 687.373 kb on + strand, within OHPLBJKB_00668 at 687.373 kb on + strand, within OHPLBJKB_00668 at 687.373 kb on + strand, within OHPLBJKB_00668 at 687.373 kb on + strand, within OHPLBJKB_00668 at 687.373 kb on + strand, within OHPLBJKB_00668 at 687.373 kb on + strand, within OHPLBJKB_00668 at 687.374 kb on - strand, within OHPLBJKB_00668 at 687.374 kb on - strand, within OHPLBJKB_00668 at 687.374 kb on - strand, within OHPLBJKB_00668 at 687.458 kb on - strand, within OHPLBJKB_00668 at 687.514 kb on + strand, within OHPLBJKB_00668 at 687.516 kb on + strand, within OHPLBJKB_00668 at 687.517 kb on - strand, within OHPLBJKB_00668 at 687.532 kb on + strand, within OHPLBJKB_00668 at 687.553 kb on - strand, within OHPLBJKB_00668 at 687.598 kb on - strand, within OHPLBJKB_00668 at 687.658 kb on + strand, within OHPLBJKB_00668 at 687.658 kb on + strand, within OHPLBJKB_00668 at 687.659 kb on - strand, within OHPLBJKB_00668 at 687.677 kb on + strand, within OHPLBJKB_00668 at 687.739 kb on + strand, within OHPLBJKB_00668 at 687.739 kb on + strand, within OHPLBJKB_00668 at 687.739 kb on + strand, within OHPLBJKB_00668 at 687.740 kb on - strand, within OHPLBJKB_00668 at 687.741 kb on + strand, within OHPLBJKB_00668 at 687.741 kb on + strand, within OHPLBJKB_00668 at 687.741 kb on + strand, within OHPLBJKB_00668 at 687.741 kb on + strand, within OHPLBJKB_00668 at 687.742 kb on - strand, within OHPLBJKB_00668 at 687.742 kb on - strand, within OHPLBJKB_00668 at 687.742 kb on - strand, within OHPLBJKB_00668 at 687.742 kb on - strand, within OHPLBJKB_00668 at 687.747 kb on + strand, within OHPLBJKB_00668 at 687.747 kb on + strand, within OHPLBJKB_00668 at 687.747 kb on + strand, within OHPLBJKB_00668 at 687.748 kb on - strand, within OHPLBJKB_00668 at 687.748 kb on - strand, within OHPLBJKB_00668 at 687.764 kb on + strand, within OHPLBJKB_00668 at 687.764 kb on + strand, within OHPLBJKB_00668 at 687.765 kb on - strand, within OHPLBJKB_00668 at 687.777 kb on - strand, within OHPLBJKB_00668 at 687.835 kb on + strand at 687.835 kb on + strand at 687.836 kb on - strand at 687.836 kb on - strand at 687.854 kb on - strand at 687.854 kb on - strand at 687.854 kb on - strand at 687.979 kb on + strand at 687.979 kb on + strand at 687.979 kb on + strand at 687.980 kb on - strand at 688.017 kb on + strand at 688.017 kb on + strand at 688.049 kb on + strand at 688.050 kb on - strand at 688.050 kb on - strand at 688.050 kb on - strand at 688.066 kb on + strand at 688.081 kb on + strand at 688.130 kb on + strand at 688.131 kb on - strand at 688.131 kb on - strand at 688.131 kb on - strand at 688.131 kb on - strand at 688.139 kb on - strand at 688.155 kb on + strand at 688.156 kb on - strand at 688.156 kb on - strand at 688.156 kb on - strand at 688.156 kb on - strand at 688.165 kb on + strand at 688.206 kb on + strand at 688.214 kb on - strand at 688.233 kb on - strand, within OHPLBJKB_00669 at 688.262 kb on - strand, within OHPLBJKB_00669 at 688.262 kb on - strand, within OHPLBJKB_00669 at 688.305 kb on + strand, within OHPLBJKB_00669 at 688.519 kb on - strand, within OHPLBJKB_00669 at 688.543 kb on - strand, within OHPLBJKB_00669 at 688.588 kb on + strand, within OHPLBJKB_00669 at 688.588 kb on + strand, within OHPLBJKB_00669 at 688.588 kb on + strand, within OHPLBJKB_00669 at 688.588 kb on + strand, within OHPLBJKB_00669 at 688.589 kb on - strand, within OHPLBJKB_00669 at 688.589 kb on - strand, within OHPLBJKB_00669 at 688.589 kb on - strand, within OHPLBJKB_00669 at 688.654 kb on + strand, within OHPLBJKB_00669 at 688.654 kb on + strand, within OHPLBJKB_00669 at 688.672 kb on - strand, within OHPLBJKB_00669 at 688.688 kb on + strand, within OHPLBJKB_00669 at 688.688 kb on + strand, within OHPLBJKB_00669 at 688.698 kb on + strand, within OHPLBJKB_00669 at 688.770 kb on + strand at 688.896 kb on + strand, within OHPLBJKB_00670 at 688.897 kb on - strand, within OHPLBJKB_00670 at 688.897 kb on - strand, within OHPLBJKB_00670 at 688.897 kb on - strand, within OHPLBJKB_00670 at 688.897 kb on - strand, within OHPLBJKB_00670 at 688.901 kb on + strand, within OHPLBJKB_00670 at 688.902 kb on - strand, within OHPLBJKB_00670 at 688.953 kb on - strand, within OHPLBJKB_00670
Per-strain Table
Position Strand Gene LocusTag Fraction vio MOI10 remove 685,537 + +0.2 685,537 + -0.2 685,538 - -0.4 685,541 - +0.3 685,571 - -0.7 685,571 - -0.7 685,702 + -0.2 685,702 + -0.7 685,703 - -0.8 685,703 - -0.2 685,847 - OHPLBJKB_00667 0.29 +1.0 685,849 - OHPLBJKB_00667 0.29 -0.4 685,849 - OHPLBJKB_00667 0.29 -0.0 685,849 - OHPLBJKB_00667 0.29 -0.8 685,849 - OHPLBJKB_00667 0.29 +0.5 685,849 - OHPLBJKB_00667 0.29 -1.1 685,849 - OHPLBJKB_00667 0.29 -0.4 685,853 - OHPLBJKB_00667 0.29 -0.1 685,853 - OHPLBJKB_00667 0.29 -0.5 685,858 - OHPLBJKB_00667 0.30 -0.7 685,941 + OHPLBJKB_00667 0.43 -0.7 686,095 + OHPLBJKB_00667 0.65 -0.5 686,124 + OHPLBJKB_00667 0.70 -0.8 686,134 + OHPLBJKB_00667 0.71 -0.5 686,134 + OHPLBJKB_00667 0.71 +0.7 686,135 - OHPLBJKB_00667 0.71 -0.3 686,188 - OHPLBJKB_00667 0.79 +0.0 686,307 - -0.5 686,349 + +0.1 686,349 + +0.1 686,349 + -0.1 686,349 + -0.4 686,350 - -2.2 686,350 - +0.3 686,354 - -1.0 686,354 - -0.3 686,430 - +0.1 686,430 - +0.8 686,492 - -1.0 686,572 + -1.1 686,573 - -0.2 686,573 - +0.3 686,713 - OHPLBJKB_00668 0.16 -0.8 686,719 - OHPLBJKB_00668 0.17 -1.7 686,752 - OHPLBJKB_00668 0.19 -0.2 686,825 + OHPLBJKB_00668 0.24 -1.3 686,826 - OHPLBJKB_00668 0.24 -2.6 686,847 - OHPLBJKB_00668 0.25 -2.5 686,859 + OHPLBJKB_00668 0.26 -0.5 686,859 + OHPLBJKB_00668 0.26 -1.8 686,872 + OHPLBJKB_00668 0.27 -2.0 686,878 + OHPLBJKB_00668 0.27 -0.8 686,878 + OHPLBJKB_00668 0.27 +0.0 686,879 - OHPLBJKB_00668 0.27 -0.9 686,887 + OHPLBJKB_00668 0.28 -2.0 686,888 - OHPLBJKB_00668 0.28 -1.0 686,970 + OHPLBJKB_00668 0.33 -1.0 686,970 + OHPLBJKB_00668 0.33 -2.0 686,971 - OHPLBJKB_00668 0.34 -1.7 686,971 - OHPLBJKB_00668 0.34 -2.2 687,013 - OHPLBJKB_00668 0.36 -3.2 687,013 - OHPLBJKB_00668 0.36 -0.9 687,056 - OHPLBJKB_00668 0.39 -3.0 687,070 - OHPLBJKB_00668 0.40 -2.4 687,108 + OHPLBJKB_00668 0.43 -0.1 687,108 + OHPLBJKB_00668 0.43 -1.5 687,109 - OHPLBJKB_00668 0.43 -0.5 687,109 - OHPLBJKB_00668 0.43 -1.5 687,156 - OHPLBJKB_00668 0.46 -0.3 687,324 + OHPLBJKB_00668 0.57 -1.1 687,324 + OHPLBJKB_00668 0.57 -2.0 687,324 + OHPLBJKB_00668 0.57 -1.1 687,324 + OHPLBJKB_00668 0.57 -0.5 687,324 + OHPLBJKB_00668 0.57 +0.5 687,324 + OHPLBJKB_00668 0.57 -0.2 687,324 + OHPLBJKB_00668 0.57 -2.6 687,325 - OHPLBJKB_00668 0.57 -1.9 687,325 - OHPLBJKB_00668 0.57 -1.9 687,325 - OHPLBJKB_00668 0.57 -2.0 687,325 - OHPLBJKB_00668 0.57 -0.8 687,353 + OHPLBJKB_00668 0.59 +1.3 687,373 + OHPLBJKB_00668 0.61 -0.8 687,373 + OHPLBJKB_00668 0.61 -0.7 687,373 + OHPLBJKB_00668 0.61 -0.8 687,373 + OHPLBJKB_00668 0.61 -0.1 687,373 + OHPLBJKB_00668 0.61 -1.1 687,373 + OHPLBJKB_00668 0.61 -2.0 687,374 - OHPLBJKB_00668 0.61 -0.7 687,374 - OHPLBJKB_00668 0.61 -2.4 687,374 - OHPLBJKB_00668 0.61 -1.2 687,458 - OHPLBJKB_00668 0.66 -1.0 687,514 + OHPLBJKB_00668 0.70 -1.1 687,516 + OHPLBJKB_00668 0.70 -0.7 687,517 - OHPLBJKB_00668 0.70 -1.1 687,532 + OHPLBJKB_00668 0.71 -1.1 687,553 - OHPLBJKB_00668 0.73 -1.4 687,598 - OHPLBJKB_00668 0.76 -3.4 687,658 + OHPLBJKB_00668 0.80 -1.0 687,658 + OHPLBJKB_00668 0.80 -0.7 687,659 - OHPLBJKB_00668 0.80 -1.0 687,677 + OHPLBJKB_00668 0.81 +0.8 687,739 + OHPLBJKB_00668 0.85 -1.7 687,739 + OHPLBJKB_00668 0.85 -0.7 687,739 + OHPLBJKB_00668 0.85 -2.0 687,740 - OHPLBJKB_00668 0.85 -2.7 687,741 + OHPLBJKB_00668 0.85 -0.3 687,741 + OHPLBJKB_00668 0.85 -1.9 687,741 + OHPLBJKB_00668 0.85 -1.9 687,741 + OHPLBJKB_00668 0.85 -1.7 687,742 - OHPLBJKB_00668 0.86 -1.0 687,742 - OHPLBJKB_00668 0.86 -2.4 687,742 - OHPLBJKB_00668 0.86 -0.5 687,742 - OHPLBJKB_00668 0.86 -1.3 687,747 + OHPLBJKB_00668 0.86 +1.8 687,747 + OHPLBJKB_00668 0.86 -1.0 687,747 + OHPLBJKB_00668 0.86 -0.7 687,748 - OHPLBJKB_00668 0.86 -0.1 687,748 - OHPLBJKB_00668 0.86 -2.1 687,764 + OHPLBJKB_00668 0.87 -1.6 687,764 + OHPLBJKB_00668 0.87 -2.1 687,765 - OHPLBJKB_00668 0.87 -1.9 687,777 - OHPLBJKB_00668 0.88 -2.0 687,835 + -2.1 687,835 + -0.8 687,836 - +0.8 687,836 - -0.4 687,854 - -1.0 687,854 - -0.9 687,854 - -1.0 687,979 + -1.7 687,979 + -0.1 687,979 + -1.0 687,980 - -1.7 688,017 + -1.7 688,017 + -0.9 688,049 + -0.2 688,050 - -0.4 688,050 - -1.9 688,050 - +0.1 688,066 + -0.2 688,081 + -1.0 688,130 + +0.6 688,131 - +1.4 688,131 - -1.7 688,131 - -0.1 688,131 - +0.3 688,139 - -0.1 688,155 + -0.8 688,156 - +0.1 688,156 - +0.2 688,156 - -0.7 688,156 - -0.3 688,165 + +0.3 688,206 + -0.6 688,214 - -0.2 688,233 - OHPLBJKB_00669 0.12 +0.3 688,262 - OHPLBJKB_00669 0.16 +0.2 688,262 - OHPLBJKB_00669 0.16 -0.7 688,305 + OHPLBJKB_00669 0.23 +0.3 688,519 - OHPLBJKB_00669 0.57 -0.0 688,543 - OHPLBJKB_00669 0.61 -1.0 688,588 + OHPLBJKB_00669 0.68 +0.3 688,588 + OHPLBJKB_00669 0.68 -0.3 688,588 + OHPLBJKB_00669 0.68 +1.3 688,588 + OHPLBJKB_00669 0.68 +1.3 688,589 - OHPLBJKB_00669 0.68 +0.8 688,589 - OHPLBJKB_00669 0.68 +0.8 688,589 - OHPLBJKB_00669 0.68 -0.3 688,654 + OHPLBJKB_00669 0.78 +0.0 688,654 + OHPLBJKB_00669 0.78 -0.4 688,672 - OHPLBJKB_00669 0.81 -0.1 688,688 + OHPLBJKB_00669 0.84 -0.9 688,688 + OHPLBJKB_00669 0.84 +0.8 688,698 + OHPLBJKB_00669 0.85 +0.2 688,770 + -0.6 688,896 + OHPLBJKB_00670 0.25 +0.1 688,897 - OHPLBJKB_00670 0.25 +0.1 688,897 - OHPLBJKB_00670 0.25 +0.3 688,897 - OHPLBJKB_00670 0.25 -0.5 688,897 - OHPLBJKB_00670 0.25 -0.1 688,901 + OHPLBJKB_00670 0.26 +0.2 688,902 - OHPLBJKB_00670 0.26 -0.5 688,953 - OHPLBJKB_00670 0.39 -0.7
Or see this region's nucleotide sequence